BAC Information

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BAC

Clone NameB6Ng01-026G18
Chromosome8 (Build37)16 (Build37)
Map Location 18,150,199 - 18,150,90110,199,815 - 10,200,641
singlet/doubletsingletsinglet
Overlap geneLOC100040466
Upstream geneCsmd1, LOC665638
Downstream geneMcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026G18.bB6Ng01-026G18.g
ACCDH857468DH857469
length998826
definitionDH857468|Mus musculus domesticus DNA, BAC clone: B6Ng01-026G18, 5' end.DH857469|Mus musculus domesticus DNA, BAC clone: B6Ng01-026G18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,150,199 - 18,150,901)(10,199,815 - 10,200,641)
sequence
gaattccccgtgtcctctagatctgggcctttctgacccccccccaccct
ttctactacttagatttcccggcaatccttccttggcatgattggggtgt
gggcacccgtatgaagttatcccctgatgactgaaacgggcctgtgatgg
actgctgccccttcccggccctgggaactgctggtctgtgtgtgtcctga
caggggtggcattctggcctgctgggctctagtaaggcgatgccctacgt
gtgaaacccaaaatcgaaaagaagggtgacaaaaatgacttaattgggcg
ggggttgtaccttttatgaggtaggggaacccctcaagaacacggaagga
catacgtggtgaggcacatcagggaggttagatatcttgtagtcctggct
tccaatgttgatattcaaaaacagtaacccttcttgattaaaaaagctaa
ttttcctcctgaataagccgattaaagaggacaaaataaacccaatgtgc
acagaagaaagaaaatgataaatatatgagaaaattaagtgacagacaaa
tgatactggaaaccaactaactaaaaagttgaatatttaaaagtttaata
aaaattgagaatccgttacaaggataacacgaaggaaagctacagagatg
taatttaatgggaatttgagtcatcatttaaaaatgataagaaagagact
gtcagaccatagatgcagtgtctataaacaagtccccatctataatatat
aaagaacagctacatgataatgattaaaaactactttaaaaacctttaga
tttttccaagtagtgtatgtataaactgttatatatagtgtatgtttatg
tgtgatatgaattatagataaatggtgatctccaacattgcattcattgg
aaaaatgaaattaaagatgcatgatacatttatacctagtttatattgaa
aaatataatttgaaattgcaaaaaatatacagactattatttatatgg
gaattccttgttcaaatttctccaaacagtccatgattacgtctaaatca
tcactcctggtaacaacttttcttagatttctattgctatgagaactcaa
ggaccccagagcaatttataaattttttttggtccttatagttacaaagg
cttaaattgatgatcactatggaacatggaaacgtgtcaccagcctttgc
acggaaaaacgcaaaaagaactaatttgaaatgtcttggacttttgaaat
ctcaaaggaaatctccagtgatactcctcctccccggagctattcaatct
atccaaaactttccctaactggcgaccaagtattcaaacatgaacctatg
ggagccattcttattcactgacattggtgtttttccgggaggttcatgtt
tgtaaccccatggctataaaagggaaaggagatgatcccaaaattctctc
agctagtctagcctgttagtttctcctgtagctaagatgcctgtcagtat
gtgtggttcttcattttgctgctagagtgtgaaaacaccactgggcagac
aaaaatgcagagacaccaggctgcgtttctcctgtcacaggagtaggttg
ctaggctttagggaagtgctgatacacttctcaggggggtgggaaaacac
agtctaagatatggaaggctgaagctggggttttcctgactcctggggaa
tccagtttgcctctggaaaatcacacagaggagtcagaaaacggagggtc
agggtgcctgggcctgcaatgaaagcctgggccaggggctcccaaactcc
tggatatctggtgggtgcctgaattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_18150199_18150901
seq2: B6Ng01-026G18.b_358_1041 (reverse)

seq1  CCATATAAACTAATAGTCTGTATATTTTTTGCATTTTTCAAAAATATATT  50
      ||||||||| ||||||||||||||||||||||| |||   ||| ||||||
seq2  CCATATAAA-TAATAGTCTGTATATTTTTTGCAATTT--CAAATTATATT  47

seq1  TATTACAATATAAAACTAGGTATAAAATTGTATCATGCTATACTTTAAAT  100
        || |||||| ||||||||||||||  |||||||||| || ||||||  
seq2  --TTTCAATAT-AAACTAGGTATAAA--TGTATCATGC-AT-CTTTAA--  88

seq1  TTTCATTTTTCCAAATGAATAGCAATGTTGATGATCACCATTTAATCTAT  150
      |||||||||||| ||||||| |||||||||  ||||||||||| ||||||
seq2  TTTCATTTTTCC-AATGAAT-GCAATGTTGGAGATCACCATTT-ATCTAT  135

seq1  AATTCATATAACACATAAACATACACTATATATAACATGTTTATACATAC  200
      ||||||||| ||||||||||||||||||||||||||| ||||||||||||
seq2  AATTCATATCACACATAAACATACACTATATATAACA-GTTTATACATAC  184

seq1  ACTACTTTGGAAAAATCTAAAGGTTTTTAAAGTAGATTTTTAATCATTAT  250
      ||||| ||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACTAC-TTGGAAAAATCTAAAGGTTTTTAAAGTAG-TTTTTAATCATTAT  232

seq1  CATGTAGCTGTTCTTTATATATTATAGATGGGGACTTGTTTATAGACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGCTGTTCTTTATATATTATAGATGGGGACTTGTTTATAGACACT  282

seq1  GCATCTATGGTCTGACAGTTTCTTTCTTATCATTTTTAAATGATGACTCA  350
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCATCTATGGTCTGACAGTCTCTTTCTTATCATTTTTAAATGATGACTCA  332

seq1  AATTCCTATTAAATTACATCTCTGTAGCTTTCCTTTGTGTTCTCCTTCTA  400
      |||||| |||||||||||||||||||||||||||| ||||| ||||| ||
seq2  AATTCCCATTAAATTACATCTCTGTAGCTTTCCTTCGTGTTATCCTTGTA  382

seq1  AAGGTTTCTCAATTTTTATTAAACTTTTAAATATTCAACTTTTTAGTTTG  450
      | || ||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACGGATTCTCAATTTTTATTAAACTTTTAAATATTCAACTTTTTAGTTAG  432

seq1  TTGGTTTTCACTATCATTTGTCTGTCACTTAATTTTCTCATATATTTATC  500
      ||||||| || |||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTCCAGTATCATTTGTCTGTCACTTAATTTTCTCATATATTTATC  482

seq1  ATTTTCTTTCTTCTGTGCACATTGGGTTTATTTTGTCCTTTTTTAATGGC  550
      ||||||||||||||||||||||||||||||||||||||| ||| |  |||
seq2  ATTTTCTTTCTTCTGTGCACATTGGGTTTATTTTGTCCTCTTTAATCGGC  532

seq1  TTCTTCAGGTGGAAAATTAGATTTTTTTATTGTGAAGTGTTCTTGTTTTC  600
      || |||||| |||||||||| |||||| ||   |||| |||  |||||| 
seq2  TTATTCAGGAGGAAAATTAGCTTTTTTAATCAAGAAGGGTTACTGTTTTT  582

seq1  TAATATAAACATTTAAAGCCATGACTATACTTCTTAGCATTGCTAA----  646
       ||||| ||||||  |||||| ||||| |      || ||  ||||    
seq2  GAATATCAACATTGGAAGCCAGGACTACA------AG-ATATCTAACCTC  625

seq1  --TGATGTGCCTCACTGCCTTCGAGATTTTGTAATATTGTGGGGTTCAGA  694
        |||||||||||||  | |  |   ||  ||  | ||| |||||||   
seq2  CCTGATGTGCCTCACCACGTATGTCCTTCCGTGTTCTTGAGGGGTTCCCC  675

seq1  TACCTCATA  703
      |||||||||
seq2  TACCTCATA  684

seq1: chr16_10199815_10200641
seq2: B6Ng01-026G18.g_65_890

seq1  GAATTCCTAGTCCAAAGTCCTCCAAAGAGCAGCATGATCAGGTCTAAATC  50
      |||||||| || |||| | ||||||| ||   |||||| | |||||||||
seq2  GAATTCCTTGTTCAAATTTCTCCAAACAG-TCCATGATTACGTCTAAATC  49

seq1  ATCAATCCTGGTAACAACTTTTCTTAGATTTCTATTGCTATGAGAAGTCA  100
      |||| ||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATCACTCCTGGTAACAACTTTTCTTAGATTTCTATTGCTATGAGAACTCA  99

seq1  CCATAACCAGAGCAATTTATAAATTTATTTTGGCCCTTATAGTTACAAAG  150
            |||||||||||||||||||| |||||| ||||||||||||||||
seq2  AGGACCCCAGAGCAATTTATAAATTTTTTTTGGTCCTTATAGTTACAAAG  149

seq1  GCTTAAGTTGATGATCACTATGGAGCATGGAAACATGTAAGCAACCATTG  200
      |||||| ||||||||||||||||| ||||||||| ||| | || || |||
seq2  GCTTAAATTGATGATCACTATGGAACATGGAAACGTGTCACCAGCCTTTG  199

seq1  CACTGGAAGAGGCAGAGAGAACTAATTTGGAATGTCTTGGACTTTTGAAA  250
      ||| | || | ||| | |||||||||||| ||||||||||||||||||||
seq2  CACGGAAAAACGCAAAAAGAACTAATTTGAAATGTCTTGGACTTTTGAAA  249

seq1  TCTCAAAGCCCATCTCCAGTGATACTCCTCCTCCAATAAGGCTATTCAAT  300
      ||||||||   |||||||||||||||||||||||    | ||||||||||
seq2  TCTCAAAGGAAATCTCCAGTGATACTCCTCCTCCCCGGA-GCTATTCAAT  298

seq1  CTATCCAAAACTTTCCCTCAACTGGGGACCAAGTATTCAAACATGAGCCT  350
      |||||||||||||||||| |||||| |||||||||||||||||||| |||
seq2  CTATCCAAAACTTTCCCT-AACTGGCGACCAAGTATTCAAACATGAACCT  347

seq1  ATGGGAGCCATTCTTATTCAAACCACATTGGTGTTTTTCCTGGTGGTTCA  400
      ||||||||||||||||||| |   |||||||||||||||| || ||||||
seq2  ATGGGAGCCATTCTTATTC-ACTGACATTGGTGTTTTTCCGGGAGGTTCA  396

seq1  TGTTTGTAACCCCAGTCCTAGAGAAAGGAGATAGGAG--GATCCCAAAAT  448
      ||||||||||||||   ||| | ||||| || |||||  |||||||||||
seq2  TGTTTGTAACCCCATGGCTATA-AAAGG-GAAAGGAGATGATCCCAAAAT  444

seq1  TCTCTCAGCTAGTCTAGCCTGTTAGTTTCTCCTGTAGCTAAGATGCCTGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAGCTAGTCTAGCCTGTTAGTTTCTCCTGTAGCTAAGATGCCTGT  494

seq1  CAGTATGTGTGGTTCTTCATTTTGCTGCTAGAGTGTGAAAACACCACTGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGTGTGGTTCTTCATTTTGCTGCTAGAGTGTGAAAACACCACTGG  544

seq1  GCAGACAAAAATGCAGAGACACCAGGCTGCGTTTCTCCTGTCACAGGAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAAAAATGCAGAGACACCAGGCTGCGTTTCTCCTGTCACAGGAGT  594

seq1  AGGTTGCTAGGCTTTAGGGAAGTGCTGATACACTTCTCAGGGGGGTGGGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGCTAGGCTTTAGGGAAGTGCTGATACACTTCTCAGGGGGGTGGGA  644

seq1  AAACACAGTCTAAGATATGGAAGGCTGAAGCTGGGG-TTTCCTGACTCCT  697
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAACACAGTCTAAGATATGGAAGGCTGAAGCTGGGGTTTTCCTGACTCCT  694

seq1  -GGGAATCCAG-TTGCCTCTGGAAAATCACACAGAGGAGTCAG-AAACGG  744
       |||||||||| ||||||||||||||||||||||||||||||| ||||||
seq2  GGGGAATCCAGTTTGCCTCTGGAAAATCACACAGAGGAGTCAGAAAACGG  744

seq1  AGGGTCAGGGTGCCTGGGCCTGCAATGAAGAGCCTGGGCCAGGGGCTCCC  794
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGGGTCAGGGTGCCTGGGCCTGCAATGAA-AGCCTGGGCCAGGGGCTCCC  793

seq1  AAACTCCTGGATATCAGGTGGGTGCCTGAGTTC  827
      ||||||||||||||| ||||||||||||| |||
seq2  AAACTCCTGGATATCTGGTGGGTGCCTGAATTC  826