BAC Information

Click to search

BAC

Clone NameB6Ng01-027L02
Chromosome12 (Build37)8 (Build37)
Map Location 47,488,522 - 47,489,16465,587,295 - 65,588,218
singlet/doubletsingletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC664952, Nova1, LOC100039190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027L02.bB6Ng01-027L02.g
ACCDH858370DH858371
length914933
definitionDH858370|Mus musculus domesticus DNA, BAC clone: B6Ng01-027L02, 5' end.DH858371|Mus musculus domesticus DNA, BAC clone: B6Ng01-027L02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(47,488,522 - 47,489,164)(65,587,295 - 65,588,218)
sequence
gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcaaggaaatgtccttcatttttatgactgtag
gtgttctgcctgagtgtatgtttgtgtaccactggaactatggggactag
aaaagggttcagatttcctggaattggatttaagggagttacataagtct
ataacccaccagttggattccagaaatcaaacccagatcctctagacaaa
gaaccagtgctcttcatccctgagatctctttacatcccaaacaattcat
tgaattttaattcaaatcttggttatataatttgcctaacatctccaatc
agctgccctgtgaaatctactcttctatcccacccaggcacaagaacttg
gccccaatgtaatgacctgcttctaatgagagtttgttaggaacatcatt
acagttgcccaagaatttcataaattcattgattttaataacttagtagt
actccattgtgtaaatgtatcacattttctgtatccattcctctgttgag
ggaaatctgggttctttccagcttctggctattataaataaggctgctaa
gaacatagtggagcatgtgtccttattaccagttggaacattttctggat
atatgcccaaaagtggtattgcttgatcttctgatagtactatgtccaat
ttctgagggaccaccagactgatttccagaatggttgtacaggcttgcaa
ttccaccagcaatggaggagtgttgctctttctccacatccttgccagta
tctgctgtcacctgaattttttgatctagcccttctgactggaatgaggt
ggaatctcaaggttgttttgatttggatttccctgatgattaagatgttg
aacatattttttaa
gaattctctggcagccaagaacttgaattttgcagcttatggtggatgga
catgatgacctacacaatgtaaaccctaccatatgtgcctttgggcttct
caatggcaacacattactgtgtggagcttactctggggaaaagtattgag
ttagggactggattaacaaccataaacttctctacaaggtgtcataagac
aacttgtataggcaacaggcttcatatactacccaggagaccgctgtttg
ccaccattgcacaccaggtccttatggggaagaaacttggttatcttttt
tttccccaattttttattagatatttacttcatttatatttcaaatgcta
tcccaaaactcccctatacccttcccctcccctgctcccctagccaccca
ctcccacttcttggccctggtgtttcccctatattggggcatataaagtt
tgagtttcaaacattatttcattttaatgtctcacattttatatctttga
tgcatttaaggttgagttttacacagaaaatatagataaggctctagttt
cgtctatctatatgtagatatacagatttctttttatactttgttgatga
ttttacctttttctccaatatttatttttttctgtttgtcaaaagtcagg
tggatgaagttaccagggcccaaatctgtgtcttccaatttatccattga
tctatgggtcaggttttatgcaagtgaaattctatctctatttgaattgt
actgtagtcaagtatcatgcatttctctggggcttattctggctatttct
agtgtttattccatgtgagtttcattttttttctatgtctgagaaaatgt
cttttttgatggagttactttccaaataaatgtaggaataaggcgacaaa
tgaagaagcacctactttcacatcgagctctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_47488522_47489164
seq2: B6Ng01-027L02.b_505_947 (reverse)

seq1  ATGTTCAACAAGAGTAAACAATATGGAAACACCAAAGAGAATTTAAAAGG  50
                                                        
seq2  --------------------------------------------------  0

seq1  CATAGCCCAACTGTAACCAATCATAAGCCCCAAATTGTAGAAAGACAGAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  CAGACTCCCGAACATTGTGCTTTGACCTCTTTGTGCATGCACATGGCTGA  150
                                                        
seq2  --------------------------------------------------  0

seq1  GAAGCACCTAAAAAATGTTCAGCATCCTTAATGATCAGGGAAATGTAAAT  200
                    ||||||| ||| |||||| |||||||||||  ||||
seq2  --------------ATGTTCAACAT-CTTAATCATCAGGGAAATCCAAAT  35

seq1  CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC-  249
      |||||||||| |||||||||||||||  |||||||||| |||| ||||| 
seq2  CAAAACAACCTTGAGATTCCACCTCATTCCAGTCAGAAGGGCT-AGATCA  84

seq1  AAAAATTCAGGTGACAGCAGATGCTGGCCAGGATGTGGAGATAGAGGAAC  299
      |||||||||||||||||||||| ||||| |||||||||||| |||| |||
seq2  AAAAATTCAGGTGACAGCAGATACTGGCAAGGATGTGGAGAAAGAGCAAC  134

seq1  ACTCTTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAAT  349
      |||| ||||||| |||||| ||||||||| |||||||||| |||||||||
seq2  ACTCCTCCATTGCTGGTGGAATTGCAAGCCTGTACAACCATTCTGGAAAT  184

seq1  CAGTGTGGCGGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGATCCT  399
      |||| ||| ||| |||||| ||||||||||||||||||           |
seq2  CAGTCTGGTGGTCCCTCAG-AAATTGGACATAGTACTA-----------T  222

seq1  CAGAAAATTGGACATAGTACTACTGGAGAATCCAGCAATACCTCTCCTGG  449
      |||||                        ||| ||||||||| ||  |||
seq2  CAGAA-----------------------GATCAAGCAATACCACTTTTGG  249

seq1  ACATTTATCCAGAAGATGTTCCAACTGGTAAGAAGGACACATGCTCAACT  499
       ||| ||||||||| |||||||||||||||| |||||||||||||| |||
seq2  GCATATATCCAGAAAATGTTCCAACTGGTAATAAGGACACATGCTCCACT  299

seq1  ATTTTCATAGCAGCCTTATTTGTAATAGCCAGAAGCTGGAAAGAACCCAG  549
      || ||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  ATGTTCTTAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAG  349

seq1  ATGCCCCTCAACAGAGGAATGGATAGAGAAAATGTGGTACATTTACACAA  599
      ||  ||||||||||||||||||||| |||||||||| |||||||||||||
seq2  ATTTCCCTCAACAGAGGAATGGATACAGAAAATGTGATACATTTACACAA  399

seq1  TGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTC  643
      |||||||||||| || ||||||||  ||||||||||||||||||
seq2  TGGAGTACTACTAAGTTATTAAAATCAATGAATTTATGAAATTC  443

seq1: chr8_65587295_65588218
seq2: B6Ng01-027L02.g_65_982

seq1  GAATTCTCTGGCAGCCAAAGAACTTGAATTTTGCAGCTTATGGTGGATGG  50
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGCAGCC-AAGAACTTGAATTTTGCAGCTTATGGTGGATGG  49

seq1  ACATGATGACCTAGACAATGTAAACCCTAGCATATGTGCCTTTGGGCTTC  100
      ||||||||||||| ||||||||||||||| ||||||||||||||||||||
seq2  ACATGATGACCTACACAATGTAAACCCTACCATATGTGCCTTTGGGCTTC  99

seq1  TCAATGGCAACACATTACTGTGTGGAGCTTAGTCTGGGGAAAAGTATTGA  150
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCAATGGCAACACATTACTGTGTGGAGCTTACTCTGGGGAAAAGTATTGA  149

seq1  GTTAGGGACTGGATTAACAACCATAAACTTCTCTACAAGGTGTCATAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGGACTGGATTAACAACCATAAACTTCTCTACAAGGTGTCATAAGA  199

seq1  CAACTTGTATAGGCAACAGGCTTCATATACTACCCAGGAGACCGCTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGTATAGGCAACAGGCTTCATATACTACCCAGGAGACCGCTGTTT  249

seq1  GCCACCATTGCACACCAGGTCCTTATGGGGAAGAAACTTGGTTATCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCATTGCACACCAGGTCCTTATGGGGAAGAAACTTGGTTATCTTTT  299

seq1  TTTTCCCCAATTTTTTATTAGATATTTACTTCATTTATATTTCAAATGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCCAATTTTTTATTAGATATTTACTTCATTTATATTTCAAATGCT  349

seq1  ATCCCAAAACTCCCCTATACCCTTCCCCTCCCCTGCTCCCCTAGCCACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAAAACTCCCCTATACCCTTCCCCTCCCCTGCTCCCCTAGCCACCC  399

seq1  ACTCCCACTTCTTGGCCCTGGTGTTTCCCCTATATTGGGGCATATAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCACTTCTTGGCCCTGGTGTTTCCCCTATATTGGGGCATATAAAGT  449

seq1  TTGAGTTTCAAACATTATTTCATTTTAATGTCTCACATTTTATATCTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTTCAAACATTATTTCATTTTAATGTCTCACATTTTATATCTTTG  499

seq1  ATGCATTTAAGGTTGAGTTTTACACAGAAAATATAGATAAGGCTCTAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTAAGGTTGAGTTTTACACAGAAAATATAGATAAGGCTCTAGTT  549

seq1  TCGTCTATCTATATGTAGATATACAGATTTCTTTTTATACTTTGTTGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCTATCTATATGTAGATATACAGATTTCTTTTTATACTTTGTTGATG  599

seq1  ATTTTACCTTTTTCTCCAATATTTATTTTTTTCTGTTTGTCAAAAGTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACCTTTTTCTCCAATATTTATTTTTTTCTGTTTGTCAAAAGTCAG  649

seq1  GTGGATGAAGTTACAAGGGCCCAAATCTGTGTCTTCCAATTTATTCCATT  700
      |||||||||||||| |||||||||||||||||||||||||||| ||||||
seq2  GTGGATGAAGTTACCAGGGCCCAAATCTGTGTCTTCCAATTTA-TCCATT  698

seq1  GATCTATGGGTCAGGTTTTATGCAAGTGAAATTCTATCTCTATTTGAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTATGGGTCAGGTTTTATGCAAGTGAAATTCTATCTCTATTTGAATT  748

seq1  GTACTGTAGTCAAGTATCATGCATTTCTCTGGGGCTTATTCTGGCTATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTACTGTAGTCAAGTATCATGCATTTCTCTGGGGCTTATTCTGGCTATTT  798

seq1  TAAGTGGTTTATTCCATGTGAGTTTCATATTTTTTCTATGTCTGTGAAAA  850
        ||| |||||||||||||||||||||| ||||||||||||||| | |||
seq2  CTAGT-GTTTATTCCATGTGAGTTTCATTTTTTTTCTATGTCTGAG-AAA  846

seq1  ATGTCATTTTGACTGGAGTTACATTTCAATATAAATGTAGGAATAAGGGG  900
      ||||| ||||   ||||||||| |||| | |||||||||||||||||| |
seq2  ATGTCTTTTTTGATGGAGTTAC-TTTCCAAATAAATGTAGGAATAAGGCG  895

seq1  ACAAATGAAAGAAGCAGCTACTTT  924
      ||||||| |||||||| |||||||
seq2  ACAAATG-AAGAAGCACCTACTTT  918