BAC Information

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BAC

Clone NameB6Ng01-027L03
Chromosome8 (Build37)
Map Location 50,034,307 - 50,171,518
singlet/doubletdoublet
Overlap geneLOC100039866
Upstream geneWwc2, LOC100040113, Dctd, Odz3, 2900073C17Rik
Downstream gene4930555F03Rik, LOC100039919, EG667495
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027L03.bB6Ng01-027L03.g
ACCDH858372DH858373
length9671,090
definitionDH858372|Mus musculus domesticus DNA, BAC clone: B6Ng01-027L03, 5' end.DH858373|Mus musculus domesticus DNA, BAC clone: B6Ng01-027L03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,034,307 - 50,035,273)(50,170,419 - 50,171,518)
sequence
gaattccagaaaaacctgaaattgactaaatcattaatgctgttttagag
actttaaatgactagtgttgtgaattttactagtacattgacttcaaaag
tagttgctctttattatcattacctaaaatggattaatgttgggaaaaca
aacaaataaataaataaataaaatatttatttatttttaaaataaataaa
ataaataaagtatcaaatgtgaaggtaattctttaaaaagagtgatagag
gggtacaacttggagataaaatgcttgtctagcatgccatggagttaaag
ccctggtactgccaaaaagaaaaaaaagttccttagttgtgtagagtttt
tgggtagggtccaggtgtttgggattccccccatccacatgtgcatgtgt
gttgctgttacccatgttcagctcatgcttaggcagtcaaggggatgata
ttttatggttgtagcttctgattatagggaataaaggaacgctgaaagta
gaaggacaagtcttccccagaaaaaagtacactgaataattatccagtac
caaaccactagctgtgaaaatatagaaaacaatacagacagagcagttat
atttatgtacttaggaatatatttgtacatacctgtacagatgtgatgtg
catatatgtaacaaacaagtaatgaaaaaggaagccatgaatttgaagta
gaacaagggactatatgggaagactttggagacaggaatgtgaagagaga
aagcatgtaattatgttataatttcaaaaaataaaagaaatagttttaaa
aaacctttgggttagcattgagaatatcaattttaggaatacaaccacat
ttaaagagattaaaaaaataaaatgagcagacagaacaaagggatataaa
aaatatccccccacaaaacaaacaaacattcaatgtacatgttgattggc
atatattggcgagaaat
gaattctaatggcactgattcacaaaacagagatgaagttctgggatgct
tccgagtgtacggcgaattaacaaatgaggaactaggttaaaccttcaaa
cactgagaacggttgaagtttaaaaataaaaaaagccatgggaacattaa
aagattttttcatcaacagttagtttattttaggatggaaaaatattata
aaaaattaagcagaggcaactttccctactcaaaacacagtatcattgtg
atataagttaaagaatcccaagaaaattgccagtcagaatattgcttgtt
atttagtacgtactaaataaaattatatttagtgaattaaaacataaaat
aaacacaattgagtttggcaacactttgtcatggcaaatgatggcttcat
gagaccccagccttctgaaaggatctatccagtattaatgtttgtgggga
gtggaaaagaaattctttggtggactaatcactgctaaattgtacctgca
cctgtaaatgactccttgcccctgcccaagtaagaaactctagttaaact
aataggtcaaaaataaaaggaaagcagagaaagcaggaatagagatgata
gaaggcacctgtgagcttggtaggacaatagatggcagagaggataaaga
tcaagctacattgtatccatgaatgaagatgtcaggatgaaggtcacagt
gtataattaccacatgctaataaatttaaagtatatttatttaaacctat
atcctaactttaaaactaattaggaaataaacaacaagaaaagcaagata
tgctctctagcttgcataaaatatttctgtaaacaaaagagctccgggtt
ccctggttagtgacaagctcctcatctttgacaaaggcagtaaaatccat
gaagcatttcacagagcgcctcaaaggaccaacttcagtaggcagcctcc
agtggatgtagagagtcgagtgggttcagttctactcctgacgcatgtca
tgctctttattattaatagtctacattctgttatttaactgagctaattt
gatatcgggagactcactaacatgataattatcaataaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_50034307_50035273
seq2: B6Ng01-027L03.b_43_1009

seq1  GAATTCCAGAAAAACCTGAAATTGACTAAATCATTAATGCTGTTTTAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAAAACCTGAAATTGACTAAATCATTAATGCTGTTTTAGAG  50

seq1  ACTTTAAATGACTAGTGTTGTGAATTTTACTAGTACATTGACTTCAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAATGACTAGTGTTGTGAATTTTACTAGTACATTGACTTCAAAAG  100

seq1  TAGTTGCTCTTTATTATCATTACCTAAAATGGATTAATGTTGGGAAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGCTCTTTATTATCATTACCTAAAATGGATTAATGTTGGGAAAACA  150

seq1  AACAAATAAATAAATAAATAAAATATTTATTTATTTTTAAAATAAATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATAAATAAATAAATAAAATATTTATTTATTTTTAAAATAAATAAA  200

seq1  ATAAATAAAGTATCAAATGTGAAGGTAATTCTTTAAAAAGAGTGATAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAAGTATCAAATGTGAAGGTAATTCTTTAAAAAGAGTGATAGAG  250

seq1  GGGTACAACTTGGAGATAAAATGCTTGTCTAGCATGCCATGGAGTTAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACAACTTGGAGATAAAATGCTTGTCTAGCATGCCATGGAGTTAAAG  300

seq1  CCCTGGTACTGCCAAAAAGAAAAAAAAGTTCCTTAGTTGTGTAGAGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTACTGCCAAAAAGAAAAAAAAGTTCCTTAGTTGTGTAGAGTTTT  350

seq1  TGGGTAGGGTCCAGGTGTTTGGGATTCCCCCCATCCACATGTGCATGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGGGTCCAGGTGTTTGGGATTCCCCCCATCCACATGTGCATGTGT  400

seq1  GTTGCTGTTACCCATGTTCAGCTCATGCTTAGGCAGTCAAGGGGATGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGTTACCCATGTTCAGCTCATGCTTAGGCAGTCAAGGGGATGATA  450

seq1  TTTTATGGTTGTAGCTTCTGATTATAGGGAATAAAGGAACGCTGAAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGGTTGTAGCTTCTGATTATAGGGAATAAAGGAACGCTGAAAGTA  500

seq1  GAAGGACAAGTCTTCCCCAGAAAAAAGTACACTGAATAATTATCCAGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGACAAGTCTTCCCCAGAAAAAAGTACACTGAATAATTATCCAGTAC  550

seq1  CAAACCACTAGCTGTGAAAATATAGAAAACAATACAGACAGAGCAGTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCACTAGCTGTGAAAATATAGAAAACAATACAGACAGAGCAGTTAT  600

seq1  ATTTATGTACTTAGGAATATATTTGTACATACCTGTACAGATGTGATGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTACTTAGGAATATATTTGTACATACCTGTACAGATGTGATGTG  650

seq1  CATATATGTAAC-AACAAGTAATGAAAAAGGAAGCCATGAATTTGAAGTA  699
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CATATATGTAACAAACAAGTAATGAAAAAGGAAGCCATGAATTTGAAGTA  700

seq1  GAACAAGGGACTATATGGGAAGAC-TTGGAGACAGGAATGTGAAGAGAGA  748
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAACAAGGGACTATATGGGAAGACTTTGGAGACAGGAATGTGAAGAGAGA  750

seq1  AAGCATGTAATTATGTTATAATTTCAAAAAATAAAAGAAATAGTTTTAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGTAATTATGTTATAATTTCAAAAAATAAAAGAAATAGTTTTAAA  800

seq1  AAACCTTTGGGTTAGCATTGAGAATATCAATTTTAGGAATACAACCACA-  847
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAACCTTTGGGTTAGCATTGAGAATATCAATTTTAGGAATACAACCACAT  850

seq1  TTAAAGAGATTAAAAAAAATAAAATGAGCAAGACAGAACAAA-GGATATA  896
      ||||||||||| ||||||||||||||||| |||||||||||| |||||||
seq2  TTAAAGAGATT-AAAAAAATAAAATGAGC-AGACAGAACAAAGGGATATA  898

seq1  AAAAATAT-CCCCCACAAAACCAAACAAAACATTCAATGTACATG-TGAT  944
      |||||||| ||||||||||| ||||| |||||||||||||||||| ||||
seq2  AAAAATATCCCCCCACAAAA-CAAAC-AAACATTCAATGTACATGTTGAT  946

seq1  TGGCATAATATTGGCGAAGAAAT  967
      |||||| ||||||||| ||||||
seq2  TGGCAT-ATATTGGCG-AGAAAT  967

seq1: chr8_50170419_50171518
seq2: B6Ng01-027L03.g_68_1157 (reverse)

seq1  ATTTATTTGATAATATACTAGTTAGTGAGTCTCCCGAATATTCAAATTAG  50
      ||||| ||||||||   |  |||||||||||||||| ||| |||||||||
seq2  ATTTA-TTGATAATTATCATGTTAGTGAGTCTCCCG-ATA-TCAAATTAG  47

seq1  CTCAAGTAAAATAACAGAATGTAGACTATATAATAAATAAAGAAGCATGA  100
      ||| ||| ||||||||||||||||||||| |||| ||||||| |||||||
seq2  CTC-AGTTAAATAACAGAATGTAGACTAT-TAAT-AATAAAG-AGCATGA  93

seq1  CATGCGTCAGGAGTAGAACTGAACCCACTCCGACTCTCTTACATCCACTG  150
      ||||||||||||||||||||||||||||| |||||||| |||||||||||
seq2  CATGCGTCAGGAGTAGAACTGAACCCACT-CGACTCTC-TACATCCACTG  141

seq1  GGGGCTGCCTACTGAAGTTGGTCCTTTGAGGCGCTCTGTTGAAATGCTTC  200
      | |||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAGGCTGCCTACTGAAGTTGGTCCTTTGAGGCGCTCTG-TGAAATGCTTC  190

seq1  ATGGATTTTACTGCCTTTGTCAAAGATGAGG-GCTTGTCACTAACCAGGG  249
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATGGATTTTACTGCCTTTGTCAAAGATGAGGAGCTTGTCACTAACCAGGG  240

seq1  AACCCGGAGCTCTTTTGTTTACAGAAATATTTTATGCAAGCTAGAGAGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCGGAGCTCTTTTGTTTACAGAAATATTTTATGCAAGCTAGAGAGCA  290

seq1  TATCTTGCTTTTCTTGTTTGTTTATTTCCTAATTAGTTTTTAAAGTTAGG  349
      |||||||||||||||| ||||||||||||||||||| |||||||||||||
seq2  TATCTTGCTTTTCTTG-TTGTTTATTTCCTAATTAG-TTTTAAAGTTAGG  338

seq1  ATATAGGTTT-AATAAATATACTTTAAATTTATTAGCATGTGGTAATTAT  398
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATATAGGTTTAAATAAATATACTTTAAATTTATTAGCATGTGGTAATTAT  388

seq1  ACACTGTGACCTTCATCCTGACATCTTCATTCATGGATACAATGTAGCTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTGACCTTCATCCTGACATCTTCATTCATGGATACAATGTAGCTT  438

seq1  GATCTTTATCCTCTCTGCCATCTATTGTCCTACCAAGCTCACAGGTGCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTATCCTCTCTGCCATCTATTGTCCTACCAAGCTCACAGGTGCCT  488

seq1  TCTATCATCTCTATTCCTGCTTTCTCTGCTTTCCTTTTATTTTTGACCTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCATCTCTATTCCTGCTTTCTCTGCTTTCCTTTTATTTTTGACCTA  538

seq1  TTAGTTTAACTAGAGTTTCTTACTTGGGCAGGGGCAAGGAGTCATTTACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTAACTAGAGTTTCTTACTTGGGCAGGGGCAAGGAGTCATTTACA  588

seq1  GGTGCAGGTACAATTTAGCAGTGATTAGTCCACCAAAGAATTTCTTTTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAGGTACAATTTAGCAGTGATTAGTCCACCAAAGAATTTCTTTTCC  638

seq1  ACTCCCCACAAACATTAATACTGGATAGATCCTTTCAGAAGGCTGGGGTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCCACAAACATTAATACTGGATAGATCCTTTCAGAAGGCTGGGGTC  688

seq1  TCATGAAGCCATCATTTGCCATGACAAAGTGTTGCCAAACTCAATTGTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAGCCATCATTTGCCATGACAAAGTGTTGCCAAACTCAATTGTGT  738

seq1  TTATTTTATGTTTTAATTCACTAAATATAATTTTATTTAGTACGTACTAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATGTTTTAATTCACTAAATATAATTTTATTTAGTACGTACTAA  788

seq1  ATAACAAGCAATATTCTGACTGGCAATTTTCTTGGGATTCTTTAACTTAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAGCAATATTCTGACTGGCAATTTTCTTGGGATTCTTTAACTTAT  838

seq1  ATCACAATGATACTGTGTTTTGAGTAGGGAAAGTTGCCTCTGCTTAATTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAATGATACTGTGTTTTGAGTAGGGAAAGTTGCCTCTGCTTAATTT  888

seq1  TTTATAATATTTTTCCATCCTAAAATAAACTAACTGTTGATGAAAAAATC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATATTTTTCCATCCTAAAATAAACTAACTGTTGATGAAAAAATC  938

seq1  TTTTAATGTTCCCATGGCTTTTTTTATTTTTAAACTTCAACCGTTCTCAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATGTTCCCATGGCTTTTTTTATTTTTAAACTTCAACCGTTCTCAG  988

seq1  TGTTTGAAGGTTTAACCTAGTTCCTCATTTGTTAATTCGCCGTACACTCG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAAGGTTTAACCTAGTTCCTCATTTGTTAATTCGCCGTACACTCG  1038

seq1  GAAGCATCCCAGAACTTCATCTCTGTTTTGTGAATCAGTGCCATTAGAAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATCCCAGAACTTCATCTCTGTTTTGTGAATCAGTGCCATTAGAAT  1088

seq1  TC  1100
      ||
seq2  TC  1090