BAC Information

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BAC

Clone NameB6Ng01-028N01
Chromosome10 (Build37)8 (Build37)
Map Location 127,780,568 - 127,781,25462,391,421 - 62,391,482
singlet/doubletsingletsinglet
Overlap geneCs
Upstream geneInhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4
Downstream geneCoq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028N01.bB6Ng01-028N01.g
ACCDH859193DH859194
length687105
definitionDH859193|Mus musculus domesticus DNA, BAC clone: B6Ng01-028N01, 5' end.DH859194|Mus musculus domesticus DNA, BAC clone: B6Ng01-028N01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(127,780,568 - 127,781,254)(62,391,421 - 62,391,482)
sequence
gaattcttattagtattacgggggtcagagtataaaatctggactactct
gctgggtctgtaagtggcctgaccaaacactgcaggctagcttccagcat
gaccattgtgaaacacagggtgtaaatggctttagttctctgacctgatt
ctggaaacagaggagtctttgtcctaggccagtttactgttgttgtttgt
tggttggtttttctttccttttttggttggtggtggttctttttttaagt
ttccttttcaagttcctctgagacagtgttccacataactgaggctggtt
ttaaaatgatcctgtttctacctcccaagttctaaggttataggtgtgta
ctactgtggcaggccttcggggacactaaggaggcgggtgtttctattta
tttttgaaattaagtctcacaatgtagccctggctgttgtagaacttaat
gtgtgtggaccaggctgtcctcaaactcactgtctctagtgctatgatta
agggtgggcaccagtgcaccctgcctgatttagttcactatgagtatgag
aattgtggcttcaaatacccccatccccacccctgagccaaagaaaagtt
tttctctttcttttcttttcttttcttttctctctctttttttttttttt
tttttttttaagatttatttaagctgggtggtggtgg
atggagctcctggttttggtttttggtttgtttttgggttttgttttttg
ttttggttggttggttttttgttttgttttgttttttgagacagggtttc
tctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_127780568_127781254
seq2: B6Ng01-028N01.b_40_726

seq1  GAATTCTTATTAGTATTACGGGGGTCAGAGTATAAAATCTGGACTACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTAGTATTACGGGGGTCAGAGTATAAAATCTGGACTACTCT  50

seq1  GCTGGGTCTGTAAGTGGCCTGACCAAACACTGCAGGCTAGCTTCCAGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTCTGTAAGTGGCCTGACCAAACACTGCAGGCTAGCTTCCAGCAT  100

seq1  GACCATTGTGAAACACAGGGTGTAAATGGCTTTAGTTCTCTGACCTGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATTGTGAAACACAGGGTGTAAATGGCTTTAGTTCTCTGACCTGATT  150

seq1  CTGGAAACAGAGGAGTCTTTGTCCTAGGCCAGTTTACTGTTGTTGTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAACAGAGGAGTCTTTGTCCTAGGCCAGTTTACTGTTGTTGTTTGT  200

seq1  TGGTTGGTTTTTCTTTCCTTTTTTGGTTGGTGGTGGTTCTTTTTTTAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGTTTTTCTTTCCTTTTTTGGTTGGTGGTGGTTCTTTTTTTAAGT  250

seq1  TTCCTTTTCAAGTTCCTCTGAGACAGTGTTCCACATAACTGAGGCTGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTCAAGTTCCTCTGAGACAGTGTTCCACATAACTGAGGCTGGTT  300

seq1  TTAAAATGATCCTGTTTCTACCTCCCAAGTTCTAAGGTTATAGGTGTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGATCCTGTTTCTACCTCCCAAGTTCTAAGGTTATAGGTGTGTA  350

seq1  CTACTGTGGCAGGCCTTCGGGGACACTAAGGAGGCGGGTGTTTCTATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTGGCAGGCCTTCGGGGACACTAAGGAGGCGGGTGTTTCTATTTA  400

seq1  TTTTTGAAATTAAGTCTCACAATGTAGCCCTGGCTGTTGTAGAACTTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAAATTAAGTCTCACAATGTAGCCCTGGCTGTTGTAGAACTTAAT  450

seq1  GTGTGTGGACCAGGCTGTCCTCAAACTCACTGTCTCTAGTGCTATGATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGGACCAGGCTGTCCTCAAACTCACTGTCTCTAGTGCTATGATTA  500

seq1  AGGGTGGGCACCAGTGCACCCTGCCTGATTTAGTTCACTATGAGTATGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGGCACCAGTGCACCCTGCCTGATTTAGTTCACTATGAGTATGAG  550

seq1  AATTGTGGCTTCAAATACCCCCATCCCCACCCCTGAGCCAAAGAAAAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGGCTTCAAATACCCCCATCCCCACCCCTGAGCCAAAGAAAAGTT  600

seq1  TTTCTCTTTCTTTTCTTTTCTTTTCTTTTCTCTCTCTTTTTTTTTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTTCTTTTCTTTTCTTTTCTTTTCTCTCTCTTTTTTTTTTTTTT  650

seq1  TTTTTTTTTAAGATTTATTTAAGCTGGGTGGTGGTGG  687
      |||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTAAGATTTATTTAAGCTGGGTGGTGGTGG  687

seq1: chr8_62391421_62391482
seq2: B6Ng01-028N01.g_101_175 (reverse)

seq1  ACAGAGAAACCCTGTCTCAAAAAACAAAACAAAACAAAAAA---------  41
      |||||||||||||||||||||||||||||||||||||||||         
seq2  ACAGAGAAACCCTGTCTCAAAAAACAAAACAAAACAAAAAACCAACCAAC  50

seq1  CAAAAC--AAAACAAAA--CAAAAA  62
      ||||||  |||||||||  ||||||
seq2  CAAAACAAAAAACAAAACCCAAAAA  75