BAC Information

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BAC

Clone NameB6Ng01-028N19
Chromosome10 (Build37)8 (Build37)
Map Location 116,423,337 - 116,424,40587,036,968 - 87,037,113
singlet/doubletsingletsinglet
Overlap geneBest3
Upstream genePtprr, 4933416C03Rik, Ptprb, Kcnmb4, Cnot2, LOC668080, EG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741
Downstream geneLrrc10, Cct2, Frs2, Yeats4, 9530003J23Rik, Lyzs, Lyz, Cpsf6, LOC668146, LOC668149, Kifc5c, Cpm, Mdm2, Slc35e3, Nup107, Rap1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028N19.bB6Ng01-028N19.g
ACCDH859228DH859229
length1,067926
definitionDH859228|Mus musculus domesticus DNA, BAC clone: B6Ng01-028N19, 5' end.DH859229|Mus musculus domesticus DNA, BAC clone: B6Ng01-028N19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(116,423,337 - 116,424,405)(87,036,968 - 87,037,113)
sequence
gaattcttgctttcattcctgtctgccccagtgtatggctccataagaat
ttattcttcatttcatgcacaaaaagactgtcctaatcccctctttggct
actggagtatgttcagaccttttcagtagaaaaaggcttttcttccttga
tcccaggccagagttgaaatgaatcttaactggacttaaatggcccagca
tcctcccgccaccgccgctgacttcttgttcaaaggggtactttgggcgg
caggtggagttataattatagattagaaaaaagcaccatcagcagctgtc
acttctgtttgtccccagctataactgtcatcagtgggcaaactggcaca
gacaggcctctgcaagtggaaaaacatttaaccctggactcactacacgc
tggatcgccacagcagcaggagaactaggaggaaacccagctggtcacca
gtgagggtggaagccggcacctcttcagggacggcagatcgtttgaagat
ttctcttcccttgagagactccaaagaaataggttagtgcgcgagccggc
ttctgcacttgaacgtgaccttatgcttggtgggcgtcgggtttcggaca
gagcctgaactgagggtgaaggagtgaatggaagaaaaggggattggtta
gaggctgtcccttgacggggcctgcctggagaagagcttaggacattgct
gttctgttctcccctgtcgctgagttctcccgaggcagagagacaaggtg
gcgatctcaaagcgaagcctgttttagggcaggcaccccacccttctgtg
gtgtcacctactgacttaggcaaagggccctggtttgtttaattaaaatc
aacaaccatggaggacaaatcagcactttgctgttgttgctgtggataca
gctgccagctcttacgtccttagagaaactggataaatcacagttggata
ttgcctgtctaaatgaaacattctcttatttgtgatagatggggtgatat
aaatcgctctacggggggaaaaaaatatgctctagggtttgtttggttgg
gttttgtgtgggtatgt
gaattcctggagagctgctggtctttaagacggtggttgtaatactggtg
aagagatgcctcagcaacaggataagtgaatttgccagccagagtgagga
caagcaggcaaaaaccaagtgcttcctcctttcttgttattttatttggg
ctgccactagaaggtgtggccctggtttagggtgggtcttcctgcctcaa
acgatctgatcaagaaagtgccttacaggcatgcccagaaacttgggttt
tagttgattccagttggcaactgtgattagctctcacaaatttattcctt
gtcaacttgatacataatcacttttccttatgccatactattttccaaat
gaaaacaataaccaggtcataattcttcctaacatgagataactatctta
tgtataatcacaaactcatagagatttcagaatagatggcagtgtacctt
gagggatgcttagtctttcagtgtctcataagaaatgcagcaaccactgt
caatgatttcacattacatgataaggaaatagggaaaagaaacataaaca
tgagatacatacatacatacatatacatatatgtgtgtgtatatctgtgt
gtatatatatatatgagcatatatatgtatatatacagtgtatatatata
tgagtgtgtgtatacacacatacatttacattaacaaaaatagagcagaa
acataatgtcaattacaatcatttctacaactggtcacatggcctgagct
ggtacttgtaactaccttccagttccagaaggttaagagtgtcttgtcat
aaagtcaggaaacatgaaagcaggcagacctggcagctggaattggaaag
ctcagagctgaggcacttcaaacatgaagcagagagtggaaccaggatgt
gacttttgaacctcaagcctgcccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_116423337_116424405
seq2: B6Ng01-028N19.b_46_1112

seq1  GAATTCTTGCTTTCATTCCTGTCTGCCCCAGTGTATGGCTCCATAAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCTTTCATTCCTGTCTGCCCCAGTGTATGGCTCCATAAGAAT  50

seq1  TTATTCTTCATTTCATGCACAAAAAGACTGTCCTAATCCCCTCTTTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTTCATTTCATGCACAAAAAGACTGTCCTAATCCCCTCTTTGGCT  100

seq1  ACTGGAGTATGTTCAGACCTTTTCAGTAGAAAAAGGCTTTTCTTCCTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGTATGTTCAGACCTTTTCAGTAGAAAAAGGCTTTTCTTCCTTGA  150

seq1  TCCCAGGCCAGAGTTGAAATGAATCTTAACTGGACTTAAATGGCCCAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGCCAGAGTTGAAATGAATCTTAACTGGACTTAAATGGCCCAGCA  200

seq1  TCCTCCCGCCACCGCCGCTGACTTCTTGTTCAAAGGGGTACTTTGGGCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCGCCACCGCCGCTGACTTCTTGTTCAAAGGGGTACTTTGGGCGG  250

seq1  CAGGTGGAGTTATAATTATAGATTAGAAAAAAGCACCATCAGCAGCTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGAGTTATAATTATAGATTAGAAAAAAGCACCATCAGCAGCTGTC  300

seq1  ACTTCTGTTTGTCCCCAGCTATAACTGTCATCAGTGGGCAAACTGGCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGTTTGTCCCCAGCTATAACTGTCATCAGTGGGCAAACTGGCACA  350

seq1  GACAGGCCTCTGCAAGTGGAAAAACATTTAACCCTGGACTCACTACACGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGCCTCTGCAAGTGGAAAAACATTTAACCCTGGACTCACTACACGC  400

seq1  TGGATCGCCACAGCAGCAGGAGAACTAGGAGGAAACCCAGCTGGTCACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCGCCACAGCAGCAGGAGAACTAGGAGGAAACCCAGCTGGTCACCA  450

seq1  GTGAGGGTGGAAGCCGGCACCTCTTCAGGGACGGCAGATCGTTTGAAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGTGGAAGCCGGCACCTCTTCAGGGACGGCAGATCGTTTGAAGAT  500

seq1  TTCTCTTCCCTTGAGAGACTCCAAAGAAATAGGTTAGTGCGCGAGCCGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCCCTTGAGAGACTCCAAAGAAATAGGTTAGTGCGCGAGCCGGC  550

seq1  TTCTGCACTTGAACGTGACCTTATGCTTGGTGGGCGTCGGGTTTCGGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCACTTGAACGTGACCTTATGCTTGGTGGGCGTCGGGTTTCGGACA  600

seq1  GAGCCTGAACTGAGGGTGAAGGAGTGAATGGAAGAAAAGGGGATTGGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGAACTGAGGGTGAAGGAGTGAATGGAAGAAAAGGGGATTGGTTA  650

seq1  GAGGCTGTCCCTTGACGGGGCCTGCCTGGAGAAGAGCTTAGGACATTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGTCCCTTGACGGGGCCTGCCTGGAGAAGAGCTTAGGACATTGCT  700

seq1  GTTCTGTTCTCCCCTGTCGCTGAGTTCTCCCGAGGCAGAGAGACAAGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTTCTCCCCTGTCGCTGAGTTCTCCCGAGGCAGAGAGACAAGGTG  750

seq1  GCGATCTCAAAGCGAAGCCTGTTTTAGGGCAGGCACCCCACCCTTCTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATCTCAAAGCGAAGCCTGTTTTAGGGCAGGCACCCCACCCTTCTGTG  800

seq1  GTGTCACCTACTGACTTAGGCAAAGGGCCCTGGTTTGTTTAATTAAAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACCTACTGACTTAGGCAAAGGGCCCTGGTTTGTTTAATTAAAATC  850

seq1  AACAACCATGGAGGACAAATCAGCACTTTGCTGTTGTTGCTGTGGATACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCATGGAGGACAAATCAGCACTTTGCTGTTGTTGCTGTGGATACA  900

seq1  GCTGCCAGCTCTTACGTCCTTAGAGAAACTGGATAAATCACAGTTGGATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCAGCTCTTACGTCCTTAGAGAAACTGGATAAATCACAGTTGGATA  950

seq1  TTTGCCTGTCTAAATGAAACATTCTCTTATTTGTGATAGAATGTGTGATA  1000
       |||||||||||||||||||||||||||||||||||||||  | ||||||
seq2  -TTGCCTGTCTAAATGAAACATTCTCTTATTTGTGATAGATGGGGTGATA  999

seq1  TAAATCGCTCTACGGGGGGAAAAAAATATGCTCTAGGGTTTGTTTGGTTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCGCTCTACGGGGGGAAAAAAATATGCTCTAGGGTTTGTTTGGTTG  1049

seq1  GGTTTTTGTGTGGGTGTGT  1069
      || |||||||||||| |||
seq2  GG-TTTTGTGTGGGTATGT  1067

seq1: chr8_87036968_87037113
seq2: B6Ng01-028N19.g_624_699 (reverse)

seq1  ATATATATATATATATATATATATATATATATATACACACACATATATAT  50
                                                    ||||
seq2  ----------------------------------------------ATAT  4

seq1  ATGTATATATATACACACACACATATGTATGTATATATGTATACACACAC  100
      ||  |||||||| | ||              ||||||| |||||||||  
seq2  ATACATATATATGCTCA--------------TATATATATATACACAC--  38

seq1  ACATATATATATACACACATATATGTGTGTATATGTATGTATGTAT  146
          | ||||| |||||||||||    |||||||||||||||||||
seq2  ----AGATATACACACACATATA----TGTATATGTATGTATGTAT  76