BAC Information

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BAC

Clone NameB6Ng01-029D04
ChromosomeX (Build37)8 (Build37)
Map Location 42,609,861 - 42,610,45962,183,696 - 62,184,937
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC637141, Wdr40c, Wdr40b, LOC665585, 1110059M19Rik
Downstream geneLOC100040038, EG385346, LOC100040075
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029D04.bB6Ng01-029D04.g
ACCDH859465DH859466
length1,0011,223
definitionDH859465|Mus musculus domesticus DNA, BAC clone: B6Ng01-029D04, 5' end.DH859466|Mus musculus domesticus DNA, BAC clone: B6Ng01-029D04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(42,609,861 - 42,610,459)(62,183,696 - 62,184,937)
sequence
gaattcttagtgtcacttatatatacaatcatatcatctgtaaaaagtga
tattttgacttcctcttttccaatttgtatccccttgatctccttttgtt
gtcgaattgctctgggtagtacttcaagtacaatgttgaataggtaagga
gaaagtgggcagccttgtctagtccctgattttagtgggattgcttccag
cttctcaccatttactttgatcctggctactggtttgctgtagatagctt
ttatcacgtttaggtatgagcattgagttcctgatctttccaagactttt
atcatgaatgggtattggatgttttcaaatgcttttttcacatctaacaa
gatgatcatgtggtttttgtctttgagtttgtttatataatggattatgt
tgatggatttccatatgttaaaccattcctggatccctggaataaaacct
acttggtcaggatggatgattgctttgatgtgttcttggattcggttagc
tagaattatattgagtatttttgcatcgatattcataagggaaattggtc
tgaagtcctctatctttgttggatctttctttggtttaggtatcagagta
attgcggcttcatagaatgagttgggtagagtaccttctacttctatttt
gtggtatagtttgtgcagaactgggattagattttctttgaaggtctgat
agaactctgcactaaacccatgtggtcttgggctttttttggatgggaga
ccattaatgattgcttctatttccttaggggatatcgggctgtttagatc
cttaacttgatcctgatttaactttggtacctggtatctgtctagaaatt
tgtccatttcgtccaggttctccagttttgttgagtatagccttttgtag
aagatctgatggggttttggattcttctgggtttgtgttatgtctcgctt
ttcatttctgatttgttaataatgatgctgtcccatgcctctttcgagct
g
gaattcacccctgaaagttcgtttaccatggaaatttttaactttgtttt
ccaattacacatttaagcagaaatattagtttgtttttatatcagaagag
agaaaagctaatttgaacatcactaccaatgtttattagagacaggtgca
gttggaactcaatgagatattataggaaatagaattcaatgtaccactaa
gaaactacctagcttttccttccattatcctgaagttgagtaatcaaaac
tttaatacataaaaaaataagacaaaaagggcaggaaagatggctaagca
gttaagagctctggatattcttccacagtagttcggcttggttccccata
tccatgcatggctcaaaaccatttgtaactccattctcaggggatcctat
gccctcctctggtctctgcaagaaccaggaatgcacatggtacacagaca
tacatgtaagcaaaacacttatacatctaaaatgaaataaaaataaaaat
taacaaagtttttgtaaagtaagacataaacttggggggggacaaaatat
ggggtataaataaataaatacagaaaaagaaaaaaagtaagacataaact
taagaatgtgaattaatcactatctgatcttaatgtttcttttcttaaat
tctcatttccatttattcaagccattgtctttgaaactgattatcttaat
ggtgttagattaatgatggaaaccaattaatgtcactatgatatttaggc
ataaaggttatttccaatctcttgagttggaccaatctgtatcagttggt
atctgcagattgcggttgaattaatgctatgtgagactcaaaaaaaatca
atgatgagaagtttctagttaacattaggggagtctcatagctgcggagt
ttggtcacacgaacagtatatactcagtggttgtttgctccatgaatcta
caagcataactaaattcactatcagataaatgagtaatgattattgacac
aaattttgcatgtctatagacacagctatagttgtcatacaaatgaaagg
ttgtcattctttcaaagatctatggaaataaaatggataaatttaggctg
ccaagttcaggaatttttgcttggattttatggagaacaaaacatttgtt
agatgcagtaaggaaatacagaaccttaaagcagataaatgtgaatttaa
tgtggcttgctatcctaaattat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_42609861_42610459
seq2: B6Ng01-029D04.b_43_642 (reverse)

seq1  TACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCA  50
      ||||||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  TACTCTGATACCTAAACCAAAGAAAGATCCAACAAAGATAGAGGACTTCA  50

seq1  GACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTC  100
      |||||||||| ||||||||||||||||||||||| ||||||| |||||| 
seq2  GACCAATTTCCCTTATGAATATCGATGCAAAAATACTCAATATAATTCTA  100

seq1  GCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGT  150
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GCTAACCGAATCCAAGAACACATCAAAGCAATCATCCATCCTGACCAAGT  150

seq1  AGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCA  200
      |||||||||||||||||| |||| ||||||||| ||| | ||||||||||
seq2  AGGTTTTATTCCAGGGATCCAGGAATGGTTTAACATATGGAAATCCATCA  200

seq1  ATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATC  250
      |  |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATC  250

seq1  TCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT  300
      | ||||||||   ||||||||||||| || |||||| |||||||||||||
seq2  TTGTTAGATGTGAAAAAAGCATTTGAAAACATCCAATACCCATTCATGAT  300

seq1  AAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAA  350
      |||||| |||||||||||||||| |||| || ||||||||||| ||||||
seq2  AAAAGTCTTGGAAAGATCAGGAACTCAATGCTCATACCTAAACGTGATAA  350

seq1  AAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAG  400
      |||| ||||||||||||||||||||||  |||||||||||||| ||||||
seq2  AAGCTATCTACAGCAAACCAGTAGCCAGGATCAAAGTAAATGGTGAGAAG  400

seq1  CTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTC  450

seq1  TCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGAC  500
      ||| ||||| |||||||| |||||||||||| || |||||||||||||||
seq2  TCCTTACCTATTCAACATTGTACTTGAAGTACTACCCAGAGCAATTCGAC  500

seq1  AACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATA  550

seq1  TCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAA-AATTC  599
      ||||||||| ||||||||||||| ||||||||||||||| |||| |||||
seq2  TCACTTTTTACAGATGATATGATTGTATATATAAGTGACACTAAGAATTC  600

seq1: chr8_62183696_62184937
seq2: B6Ng01-029D04.g_68_1290

seq1  GAATTCACCCCTGAAAGTTCGTTTACCATGGAAATTTTTAACTTTGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCCTGAAAGTTCGTTTACCATGGAAATTTTTAACTTTGTTTT  50

seq1  CCAATTACACATTTAAGCAGAAATATTAGTTTGTTTTTATATCAGAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTACACATTTAAGCAGAAATATTAGTTTGTTTTTATATCAGAAGAG  100

seq1  AGAAAAGCTAATTTGAACATCACTACCAATGTTTATTAGAGACAGGTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGCTAATTTGAACATCACTACCAATGTTTATTAGAGACAGGTGCA  150

seq1  GTTGGAACTCAATGAGATATTATAGGAAATAGAATTCAATGTACCACTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAACTCAATGAGATATTATAGGAAATAGAATTCAATGTACCACTAA  200

seq1  GAAACTACCTAGCTTTTCCTTCCATTATCCTGAAGTTGAGTAATCAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTACCTAGCTTTTCCTTCCATTATCCTGAAGTTGAGTAATCAAAAC  250

seq1  TTTAATACATAAAAAAATAAGACAAAAAGGGCAGGAAAGATGGCTAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATACATAAAAAAATAAGACAAAAAGGGCAGGAAAGATGGCTAAGCA  300

seq1  GTTAAGAGCTCTGGATATTCTTCCACAGTAGTTCGGCTTGGTTCCCCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAGCTCTGGATATTCTTCCACAGTAGTTCGGCTTGGTTCCCCATA  350

seq1  TCCATGCATGGCTCAAAACCATTTGTAACTCCATTCTCAGGGGATCCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCATGGCTCAAAACCATTTGTAACTCCATTCTCAGGGGATCCTAT  400

seq1  GCCCTCCTCTGGTCTCTGCAAGAACCAGGAATGCACATGGTACACAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCCTCTGGTCTCTGCAAGAACCAGGAATGCACATGGTACACAGACA  450

seq1  TACATGTAAGCAAAACACTTATACATCTAAAATGAAATAAAAATAAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTAAGCAAAACACTTATACATCTAAAATGAAATAAAAATAAAAAT  500

seq1  TAACAAAGTTTTTGTAAAGTAAGACATAAACTTGGGGGGGGACAAAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAGTTTTTGTAAAGTAAGACATAAACTTGGGGGGGGACAAAATAT  550

seq1  GGGGTATAAATAAATAAATACAGAAAAAGAAAAAAAGTAAGACATAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTATAAATAAATAAATACAGAAAAAGAAAAAAAGTAAGACATAAACT  600

seq1  TAAGAATGTGAATTAATCACTATCTGATCTTAATGTTTCTTTTCTTAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATGTGAATTAATCACTATCTGATCTTAATGTTTCTTTTCTTAAAT  650

seq1  TCTCATTTCCATTTATTCAAGCCATTGTCTTTGAAACTGATTATCTTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTCCATTTATTCAAGCCATTGTCTTTGAAACTGATTATCTTAAT  700

seq1  GGTGTTAGATTAATGATGGAAACCAATTAATGTCACTATGATATTTAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTAGATTAATGATGGAAACCAATTAATGTCACTATGATATTTAGGC  750

seq1  ATAAAGGTTATTTCCAATCTCTTGAGTTGGACCAATCTGTATCAGTTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGTTATTTCCAATCTCTTGAGTTGGACCAATCTGTATCAGTTGGT  800

seq1  ATCTGCAGATTGCGGTTGAATTAATGCTATGTGAGACTCAAAAAAAATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCAGATTGCGGTTGAATTAATGCTATGTGAGACTCAAAAAAAATCA  850

seq1  ATGATGAGAAGTTTCTAGTTAACATTAGGGGAGTCTCATAGCTGCGGAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAGAAGTTTCTAGTTAACATTAGGGGAGTCTCATAGCTGCGGAGT  900

seq1  TTGGTCACACGAACAGTATATACTCAGTGGTTGTTTGCTCCAATGAATCT  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTGGTCACACGAACAGTATATACTCAGTGGTTGTTTGCTCC-ATGAATCT  949

seq1  ACAAGCAATAACTAAATTCAACTATCAGATAAATGAGTAATGATTATTGA  1000
      |||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  ACAAGC-ATAACTAAATTC-ACTATCAGATAAATGAGTAATGATTATTGA  997

seq1  CAACCAAAATTTTGCATGTCTATAGACACAGCTATTAGTTGTCATACAAA  1050
      ||    |||||||||||||||||||||||||||| |||||||||||||||
seq2  CA---CAAATTTTGCATGTCTATAGACACAGCTA-TAGTTGTCATACAAA  1043

seq1  TGAAAAGTTGTCAATACTTTCAAAGAATCATGGAAATAAAATTGTATAAT  1100
      ||||| |||||| || ||||||||||   |||||||||||| || |||| 
seq2  TGAAAGGTTGTC-ATTCTTTCAAAGATCTATGGAAATAAAA-TGGATAAA  1091

seq1  TTTAGGCTGCCAAGTTCAGGGATTTTTGCTTTGATTTTATGTAGTACAAA  1150
      |||||||||||||||||||| |||||||||| ||||||||| || |||||
seq2  TTTAGGCTGCCAAGTTCAGGAATTTTTGCTTGGATTTTATGGAGAACAAA  1141

seq1  ACATTTG-TAGATTGCAGTAAAGGAAAATCAGAACTTTAAAAAGCAGGAT  1199
      ||||||| |||| |||||| |||||||  |||||| ||  |||||| |||
seq2  ACATTTGTTAGA-TGCAGT-AAGGAAATACAGAACCTT--AAAGCA-GAT  1186

seq1  AAATATGTTGAATTTATATAGTGGCTTTGCTATCCATAATTAT  1242
      ||||    |||||||| || ||||| |||||||||  ||||||
seq2  AAAT---GTGAATTTA-AT-GTGGC-TTGCTATCCTAAATTAT  1223