BAC Information

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BAC

Clone NameB6Ng01-029E13
Chromosome8 (Build37)
Map Location 70,499,568 - 70,622,642
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665453, Nat1, Nat2, LOC100041265, Nat3, Psd3
Downstream geneSh2d4a, LOC665510, 4732435N03Rik, Ints10, Lpl, LOC100041138, Slc18a1, Atp6v1b2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029E13.bB6Ng01-029E13.g
ACCDH859529DH859530
length1,144656
definitionDH859529|Mus musculus domesticus DNA, BAC clone: B6Ng01-029E13, 5' end.DH859530|Mus musculus domesticus DNA, BAC clone: B6Ng01-029E13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,499,568 - 70,500,724)(70,621,988 - 70,622,642)
sequence
gaattctgaaagaaatgttcagggtttgaaactacaacaaaccaagtagg
cccatctctcaagaagaccaattcatacgcaggggacaaagatcagatgg
tgtatctagggacagcagacttggtgacagaaatgaagctgagaagtcca
gcttgacagctggcagcttgtcttacttggggaaaggcttaaaatctccc
agctttagtttattaacctccaagctgtggatgtttagcttcttgattag
taaacgctgtggtgaaggcacaggatccggacttgtaatctagactccgt
taccttccaattgtgtcactttaaggttatttaacgtttctagtcagctt
cttcattcaaaaccacacaaataataatagggttacactaaggattaaat
aaactacaaatacaaataaaccactcagatagtaaataatgataaaagct
caaaagtaattattgtaactcttattatcaacaactaccattgcttggtg
tagagacagggtctcaaataccccaggatggccataactgctgatcttcc
tgcctcagtcttctgaatgctgagtttataggcatatgccaccagcttat
tttaaactaagctgcccggttcttctttttccaaaactctaagcaaagct
gctaggattgggcagagggatgagtagaaaggaagagaggacaatttctg
ttggcttcatccacatgttaaccaatccacaaatcacgggtttccaaaag
atgcaatctaatattgatggcagccttccgagagtccttacgatggaaag
cataggacagacacccttggctctctgctttcttaagcatgggctgcaga
agaggagtcaggaatgaaacagcctgaatggtaagcattccaacagctgg
ggagacaaataagaaccctataccccacgaagactctcacaaccctagta
acttctgtaaaaagagaaaacctcttgagttctttcgctcagtttcagtc
actggtacgtcccagtactttcatctgttagaaatctccaggatccatct
tttctgaagcaactacagacaaatgaaaatgtagctctagaactttaggt
ccttcttgtcaatgctactgcattgaatttataaagtcaacaga
gaattccttacattgacagactttagaggggagggaatctgagtttgggg
gagggggtttctcagtttagattagtgaaggtactagataaaatacaggg
cagtattttaggaagttatttctattgcctcgccctactttagggctact
gaactaagcactagtttaggctataaggtgtgacaggtttcttctaaggg
gcagcctctatgatccaacatttgtaagatgtgacctatttagataattc
aaatacatatttagtggtctgtaaaaggacagataaaaatttcgtgatgt
tgcataaaaagcaccaacatacaaattgaactaaatgctttgttttcaca
tatacacacacacatatgcacacaagcacacatgtgcaccaccccctcac
acacacacacacactaagatacaatgaaataaatttgaaagttaagcaat
gaaaattttaagagtttctttcaggctggagagatggctcagtggttaag
atcacagactgttctggtgaaagtcatgagttcaggtacaattacccaca
tggtggctcaccaccatctataatgagatctgatgccccacttctggtgt
gtctgaacaccgctaaagagcacttacatatcataaaaaaacaaatctta
caaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_70499568_70500724
seq2: B6Ng01-029E13.b_41_1184

seq1  GAATTCTGAAAGAAATGTTCAGGGTTTGAAACTACAACAAACCAAGTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAAGAAATGTTCAGGGTTTGAAACTACAACAAACCAAGTAGG  50

seq1  CCCATCTCTCAAGAAGACCAATTCATACGCAGGGGACAAAGATCAGATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTCTCAAGAAGACCAATTCATACGCAGGGGACAAAGATCAGATGG  100

seq1  TGTATCTAGGGACAGCAGACTTGGTGACAGAAATGAAGCTGAGAAGTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTAGGGACAGCAGACTTGGTGACAGAAATGAAGCTGAGAAGTCCA  150

seq1  GCTTGACAGCTGGCAGCTTGTCTTACTTGGGGAAAGGCTTAAAATCTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGACAGCTGGCAGCTTGTCTTACTTGGGGAAAGGCTTAAAATCTCCC  200

seq1  AGCTTTAGTTTATTAACCTCCAAGCTGTGGATGTTTAGCTTCTTGATTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTAGTTTATTAACCTCCAAGCTGTGGATGTTTAGCTTCTTGATTAG  250

seq1  TAAACGCTGTGGTGAAGGCACAGGATCCGGACTTGTAATCTAGACTCCGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACGCTGTGGTGAAGGCACAGGATCCGGACTTGTAATCTAGACTCCGT  300

seq1  TACCTTCCAATTGTGTCACTTTAAGGTTATTTAACGTTTCTAGTCAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCCAATTGTGTCACTTTAAGGTTATTTAACGTTTCTAGTCAGCTT  350

seq1  CTTCATTCAAAACCACACAAATAATAATAGGGTTACACTAAGGATTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTCAAAACCACACAAATAATAATAGGGTTACACTAAGGATTAAAT  400

seq1  AAACTACAAATACAAATAAACCACTCAGATAGTAAATAATGATAAAAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACAAATACAAATAAACCACTCAGATAGTAAATAATGATAAAAGCT  450

seq1  CAAAAGTAATTATTGTAACTCTTATTATCAACAACTACCATTGCTTGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTAATTATTGTAACTCTTATTATCAACAACTACCATTGCTTGGTG  500

seq1  TAGAGACAGGGTCTCAAATACCCCAGGATGGCCATAACTGCTGATCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACAGGGTCTCAAATACCCCAGGATGGCCATAACTGCTGATCTTCC  550

seq1  TGCCTCAGTCTTCTGAATGCTGAGTTTATAGGCATATGCCACCAGCTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAGTCTTCTGAATGCTGAGTTTATAGGCATATGCCACCAGCTTAT  600

seq1  TTTAAACTAAGCTGCCCGGTTCTTCTTTTTCCAAAACTCTAAGCAAAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACTAAGCTGCCCGGTTCTTCTTTTTCCAAAACTCTAAGCAAAGCT  650

seq1  GCTAGGATTGGGCAGAGGGATGAGTAGAAAGGAAGAGAGGACAATTTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGATTGGGCAGAGGGATGAGTAGAAAGGAAGAGAGGACAATTTCTG  700

seq1  TTGGCTTCATCCACATGTTAACCAATCCACAAATCACGGGTTTCCAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTCATCCACATGTTAACCAATCCACAAATCACGGGTTTCCAAAAG  750

seq1  ATGCAATCTAATATTGATGGCAGCCTTCCGAGAGTCCTTACGATGGAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATCTAATATTGATGGCAGCCTTCCGAGAGTCCTTACGATGGAAAG  800

seq1  CATAGGACAGACACCCTTGGCTCTCTGCTTTCTTAAGCATGGGCTGCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGACAGACACCCTTGGCTCTCTGCTTTCTTAAGCATGGGCTGCAGA  850

seq1  AGAGGAGTCAGGAATGAAACAGCCTGAATGGTAAGCATTCCAAACAGCTG  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGAGGAGTCAGGAATGAAACAGCCTGAATGGTAAGCATTCC-AACAGCTG  899

seq1  GGGAGACAAAATAAGAACCCTATACCCCACGAAGACTCTCACAACCCTAG  950
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAC-AAATAAGAACCCTATACCCCACGAAGACTCTCACAACCCTAG  948

seq1  TAACTTCTGTAATAAAGAGAAAAACCTCTTGAGTTCTTTCGCCTCAGTTT  1000
      |||||||||||| |||||| ||||||||||||||||||||| ||||||||
seq2  TAACTTCTGTAA-AAAGAG-AAAACCTCTTGAGTTCTTTCG-CTCAGTTT  995

seq1  CAGTCACTGGTTACGTCCCAGTACCTTCCTTCTGTTAGAAATCTCCCAGG  1050
      |||||||||| |||||||||||| ||| | |||||||||||||| |||||
seq2  CAGTCACTGG-TACGTCCCAGTA-CTTTCATCTGTTAGAAATCT-CCAGG  1042

seq1  ATCCATCTTTTCTGAAGCAACTACAGAACAGATGAAAATGTAGCTCTGAG  1100
      |||||||||||||||||||||||||| ||| |||||||||||||||| ||
seq2  ATCCATCTTTTCTGAAGCAACTACAG-ACAAATGAAAATGTAGCTCT-AG  1090

seq1  AACTTTAGGTCCTTCTTGTACGACTGCTACTGCATTTGACTTTATAAAGT  1150
      |||||||||||||||||||   | |||||||||| |||| ||||||||||
seq2  AACTTTAGGTCCTTCTTGT--CAATGCTACTGCA-TTGAATTTATAAAGT  1137

seq1  CAACAGA  1157
      |||||||
seq2  CAACAGA  1144

seq1: chr8_70621988_70622642
seq2: B6Ng01-029E13.g_64_719 (reverse)

seq1  -TTTTTAAAGATTTCTTTATTTATTATATGTAAGTGCACTGTAGCTGTCT  49
       ||||  ||||||| ||| ||||| |||||||||||| || |||| || |
seq2  TTTTTGTAAGATTTGTTTTTTTATGATATGTAAGTGCTCTTTAGCGGTGT  50

seq1  TCAGACACCCCAGAAG-AGGGCATCAGATCTCATTATAGATGGTTGTGAG  98
      |||||||| |||||||  |||||||||||||||||||||||||| |||||
seq2  TCAGACACACCAGAAGTGGGGCATCAGATCTCATTATAGATGGTGGTGAG  100

seq1  CCACCATGTGGTTGCTGGGATTTGAACTCAGGACTTTCAGAAGAACAGTC  148
      ||||||||||| |  | | |  |||||||| ||||||||  |||||||||
seq2  CCACCATGTGGGTAATTGTACCTGAACTCATGACTTTCACCAGAACAGTC  150

seq1  AGTGCTCTTAACCACTGAGCCATCTCTCCAGCCTGAAAGAAACTCTTAAA  198
       ||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCTTAACCACTGAGCCATCTCTCCAGCCTGAAAGAAACTCTTAAA  200

seq1  ATTTCCATTGCTTAACTTTCAAATTTATTTCATTGTATCTTAGTGTGTGT  248
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATTGCTTAACTTTCAAATTTATTTCATTGTATCTTAGTGTGTGT  250

seq1  GTGTGTGTGAGGGGGTGGTGCACATGTGTGCTTGTGTGCATATGTGTGTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGAGGGGGTGGTGCACATGTGTGCTTGTGTGCATATGTGTGTG  300

seq1  TGTATATGTGAAAACTTGACATTTAGTTCAATTTGTATTTTGGTGCTTTC  348
      |||||||||||||||    ||||||||||||||||||| |||||||||| 
seq2  TGTATATGTGAAAACAAAGCATTTAGTTCAATTTGTATGTTGGTGCTTTT  350

seq1  TATGCAACATCTTGAAATTTATATCTGTCCTTTTACAGACCACTGAATAT  398
      |||||||||||  ||||||| ||||||||||||||||||||||| |||||
seq2  TATGCAACATCACGAAATTTTTATCTGTCCTTTTACAGACCACTAAATAT  400

seq1  GTATTTGAATTATCTAAATAGGTCACATCTTACAAATGTTGGATCATAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGAATTATCTAAATAGGTCACATCTTACAAATGTTGGATCATAGA  450

seq1  GGCTGCCCCTGTAGAAGAAACCTGTCACACCTTATAGCCTAAACTAGTGC  498
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCCCCT-TAGAAGAAACCTGTCACACCTTATAGCCTAAACTAGTGC  499

seq1  TTAGTTCAGTAGCCCTAAAGTAGGGCGAGGCAATAGAAATAACTTCCTAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCAGTAGCCCTAAAGTAGGGCGAGGCAATAGAAATAACTTCCTAA  549

seq1  AATACTGCCCTGTATTTTATCTAGTACCTTCACTAATCTAAACTGAGAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGCCCTGTATTTTATCTAGTACCTTCACTAATCTAAACTGAGAAA  599

seq1  CCCCCTCCCCCAAACTCAGATTCCCTCCCCTCTAAAGTCTGTCAATGTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCCCCCAAACTCAGATTCCCTCCCCTCTAAAGTCTGTCAATGTAA  649

seq1  GGAATTC  655
      |||||||
seq2  GGAATTC  656