BAC Information

Click to search

BAC

Clone NameB6Ng01-029I16
Chromosome7 (Build37)8 (Build37)
Map Location 50,408,868 - 50,410,6614,565,450 - 4,566,529
singlet/doubletsingletsinglet
Overlap geneLOC100039589
Upstream geneEG637898, Gprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199
Downstream geneEG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029I16.bB6Ng01-029I16.g
ACCDH859714DH859715
length9971,070
definitionDH859714|Mus musculus domesticus DNA, BAC clone: B6Ng01-029I16, 5' end.DH859715|Mus musculus domesticus DNA, BAC clone: B6Ng01-029I16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,408,868 - 50,410,661)(4,565,450 - 4,566,529)
sequence
gaattctttcatgttttcaaagtgaagcatgagaaataaaggatttacta
cattgcttacattcatagggtttctctccagcatgtattcttttatgtat
ttggaaatagttttgatatgcaaaggctttgccacattgattatgctcat
agggcttctccccactatgtgttcttttatgtacttggaaagttctatga
taggcaaagcctttaccacactgattacaaggtttctctccagtatgtgt
gattttatgcattttgagattaccatgtcatgcaaaggctttaccacatt
gattacatttgtaaggtttctccccagtatgaattcttttatgtattcaa
agctgatctcttgcatgcacccgactggccaggaggaacgacgctgcaac
aggatccttccgcacacgtttattgggagagcttgattgcagaggcgaag
tgaccccaagcccagaactggtgctgcttatataggcctaggagaggcgt
tctctctcatctgattggttaacttgtctctcatctgattggttaacttg
tctctcatctgattggttaactttggttaattctcaaaacctcatcttgg
caaaagaacctttactgcctatgtatgtgtggtggccagcagtagccaac
tgccactctgcaactgccactctgtaactgccactctgcaacggcttccc
acactgatcacgataagcaaaggctttaccacattgcttacattcatagg
atttctctccagtatgtgttattttatgcattttgtgaggactaagttgt
gcataggctttaccacattgattacatttgtaaggtttctctccagtatg
aattatttcatgtttttgaagttgagcacgagaagcaaaagatttactac
attgattacattcataacatttgactctagtatgaattctttcatgtctt
tgaagaacattctgacatacaaaggctttgccacattgattacatta
gaattcatgccaatggcttgcactgggtgattttaggtaatattattggg
tataatttgtggcaacactaattcctgacaacaagctagaagagggcagg
aatagtggagtaataaggggaaaattaagtcttagaaaagagaagggaga
atgaaagaaactagaatacttttgttctttttgaagcaaagaaactagta
aatggaaataacaaaaataaattattgacagttcttgggatataagagca
gtatggaggacgtagatggcagtgttgtatccacacataatatttctagg
cattgtatatctttaaaataaggcagaaaataaagatgtaaaatagttaa
cttactgagtatattaagtctcactgcttggatcatcaattgtggaatct
aagacaatagtaaaaagaggtaaaaaggcagcaaccaccacatctccatc
cttgtatacactggtgtttgtctttgcagcacagtcagagcggtcaaagg
agtagacataactggaatactgcaggaacataaaaatcagaaggagcatc
atagaagtatctgcaaagtttaagtctgtgtagaggttgaattttcaaag
ccaggaggtatatacatatccgatgaatttgtatcaattcatgccaattc
caattttgttgttgattatgatggttactcttattcccatggcttcctca
actcagttttcaaatatcccctggaggattctggaaaactttctttcctg
gaactccacctttgaggttcaacttgcagcaaaatacacaatatggaaaa
catgttttgaggcttgtcatctctagtctcagtgccatgatttcatccag
ttctgttaacaacagtgctcctgaggtcaagtccccttgggaagacttga
ccaagctgatgtcaaaaaacttaccttctgctgtgatgaaaatattgtca
taaggatggggatgtatctcaactgacagtatgctttctatcatgaaagt
cttgggagtaacaccagaaatgcataaactggtgcatgttttaacctctg
taatccagtcctggggatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_50408868_50410661
seq2: B6Ng01-029I16.b_102_385 (reverse)

seq1  AAAGAACACATACTGGAGAGAAACCTTACCAATGTAATCAATGTGGTAAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GCCTTTGCACTAAGGAGTCATCTTCAAAGACATAAAGTAGTACATACTGG  100
                                                        
seq2  --------------------------------------------------  0

seq1  AGTGAGACCCTACATATGTAATCAGTGTAATAAAGCCTATCCACGCCAGG  150
                                                        
seq2  --------------------------------------------------  0

seq1  GTTGTCTCCGAAAACATGAAAGAACACATACTGGAGAGAAACCTTACCAA  200
                                                        
seq2  --------------------------------------------------  0

seq1  TGTAATCAATGTGGTAAAGCCTTTACACTAAGGAGTCAGCTTCAAAGCTA  250
                                                        
seq2  --------------------------------------------------  0

seq1  TAAAGTAGTACATACTGGAGTGAGACCCTACATATGTAAGCAGTGTAATA  300
                                                        
seq2  --------------------------------------------------  0

seq1  AAGCCTATCCACACCAGAGTACTCTCAGAAAACATGAAAGAACACATACT  350
                                                        
seq2  --------------------------------------------------  0

seq1  GGAGAGAAACTTTATATATGTAATAGTGTGATAAAGCCTATTCACACCAG  400
                                                        
seq2  --------------------------------------------------  0

seq1  AGTAATCTCCAAATACATGAAAGAACACATAATGGAGCTAAACCTTATAT  450
                                                        
seq2  --------------------------------------------------  0

seq1  ATGCAATCTGTGTGATAAAGCCTATTCACAACAGAGTTGTTTCCAAATAC  500
                                                        
seq2  --------------------------------------------------  0

seq1  ATGAAAAAACACATACTGGTGAGAAACCCTATAAATGTAATCAGTGTGAT  550
                                                        
seq2  --------------------------------------------------  0

seq1  AAAGGTTTTGCACAGCTCAGGTACCTTTGAGCACATGAAAGAACACATAC  600
                                                        
seq2  --------------------------------------------------  0

seq1  TCAAGAGAAAACCTACAAATGTAATCAATGTGGTAAATCCTTTGCATAGC  650
                                                        
seq2  --------------------------------------------------  0

seq1  TCACCTATCTTCGAGTACATGAAAGAAGACATACTGGAGAGAAACCCTAT  700
                           ||||||  |||||||| |||||||| || 
seq2  ---------------------AAAGAATTCATACTGGGGAGAAACCTTAC  29

seq1  AAATGTAATCAATGTGGTAAAGCCTTTTTACAACCCAGCTATCTTCGAAT  750
      |||||||||||||||||||||||||||  |  ||   |  ||||   |||
seq2  AAATGTAATCAATGTGGTAAAGCCTTTGCATGACATGGTAATCTCAAAAT  79

seq1  GCATGAAAGAACACATACTGGAGAGAAACCTTACCAATGTAATGAATGTG  800
      |||| |||  |||||||||||||||||||||      |||||| | ||||
seq2  GCATAAAATCACACATACTGGAGAGAAACCT------TGTAATCAGTGTG  123

seq1  ATAAAGCCTTTTTACAGCTCAGGTATCTTAGATTACATGAAAGAAGACAT  850
       ||||| ||||    | |  ||   | |   | ||||| |||||| ||||
seq2  GTAAAGGCTTTGCCTATCATAGAACTTTCCAAGTACATAAAAGAACACAT  173

seq1  AGTGGAGAGAAACCCTATGAATGTAATCAATGTGGTAAAGCCTTTTTACA  900
      ||||| ||||| ||||||||   |||||||||||| |||||||||  | |
seq2  AGTGGGGAGAAGCCCTATGAGCATAATCAATGTGGCAAAGCCTTTGCATA  223

seq1  TCCCAGCTATCTTCGAATGCATGAAAGAACACATACTGGAGAGAAACCCT  950
      ||  | |||| | | ||| ||| |||||| |||| |||||||||||||||
seq2  TCAAAACTATTTCCAAATACATAAAAGAATACATGCTGGAGAGAAACCCT  273

seq1  ATGAATGT-AGTCAATGTGGTAAACCCTTTTTGCAACCTCACTATCTTCG  999
      |||||||| ||                                       
seq2  ATGAATGTAAG---------------------------------------  284

seq1  AAAACATGAAAAAACACATAATTGGAGAGAAACCTTACAAATGTGATCAA  1049
                                                        
seq2  --------------------------------------------------  284

seq1  TGTGCTAAGGCCCTTACACAAAGCAGTCATCTTAAAACCCATAAAGTAAT  1099
                                                        
seq2  --------------------------------------------------  284

seq1  ATATACTGGAGGGAGACTCTAAATATGTAATCAGTGTGATGAAGCCTATT  1149
                                                        
seq2  --------------------------------------------------  284

seq1  CACACCGGAGTTATCTTCTAATACATGAAAGAACACATACTGGAGAGAAA  1199
                                                        
seq2  --------------------------------------------------  284

seq1  CCTTATAAATGTAATCAGTGTAGGAAGTCATTTTTATCTCACAGTCATCA  1249
                                                        
seq2  --------------------------------------------------  284

seq1  TCAAGCTGATGAAAGAATTTATACTGGATAGAAACTCTACAAATGTAATG  1299
                                                        
seq2  --------------------------------------------------  284

seq1  AATGTGATAAAGCTTTTTCACAGCCCAAGTATCTTCGAATACATGAAAGA  1349
                                                        
seq2  --------------------------------------------------  284

seq1  ACACATACGGGAGAGAAACCTTACCAATATAATCAGTGTGACAAACCCTT  1399
                                                        
seq2  --------------------------------------------------  284

seq1  TGCACAAGGCAATAATCTCAAAGTACATACAAGAATGCATATTGGAAAGA  1449
                                                        
seq2  --------------------------------------------------  284

seq1  TCCCTATGAATGTAATCAATGTGGTAAAGCCTTTGCATATGACTAATCTT  1499
                                                        
seq2  --------------------------------------------------  284

seq1  TTGGGATGCATCAAAGAACAGATACTGGAAAGAAAGATTACCAACATAAT  1549
                                                        
seq2  --------------------------------------------------  284

seq1  CAATGTGGTAAAGCCTTTGCAGAAAGCAGTCATCTTCAAACCCGTAACAT  1599
                                                        
seq2  --------------------------------------------------  284

seq1  ACTACATACTGGAGAGACTCTGCAAATGTAATCAGTGTGATAATGCCTCT  1649
                                                        
seq2  --------------------------------------------------  284

seq1  TCACAAGAGAGTGGTCTCCAAATACATAAAAGGAAACATTCTGTAGAGAT  1699
                                                        
seq2  --------------------------------------------------  284

seq1  ACCTTAGAAATGTAGTCAATGTGATGAAGCCTATTCACAGCACAATGGTC  1749
                                                        
seq2  --------------------------------------------------  284

seq1  TTACCTACAATAACTGATACTGGAGAGAAACCCTATGAATGTAAG  1794
                                                   
seq2  ---------------------------------------------  284

seq1: chr8_4565450_4566529
seq2: B6Ng01-029I16.g_67_1136

seq1  GAATTCATGCCAATGGCTTGCACTGGGTGATTTTAGGTAATATTATTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCCAATGGCTTGCACTGGGTGATTTTAGGTAATATTATTGGG  50

seq1  TATAATTTGTGGCAACACTAATTCCTGACAACAAGCTAGAAGAGGGCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTGTGGCAACACTAATTCCTGACAACAAGCTAGAAGAGGGCAGG  100

seq1  AATAGTGGAGTAATAAGGGGAAAATTAAGTCTTAGAAAAGAGAAGGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGGAGTAATAAGGGGAAAATTAAGTCTTAGAAAAGAGAAGGGAGA  150

seq1  ATGAAAGAAACTAGAATACTTTTGTTCTTTTTGAAGCAAAGAAACTAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGAAACTAGAATACTTTTGTTCTTTTTGAAGCAAAGAAACTAGTA  200

seq1  AATGGAAATAACAAAAATAAATTATTGACAGTTCTTGGGATATAAGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAATAACAAAAATAAATTATTGACAGTTCTTGGGATATAAGAGCA  250

seq1  GTATGGAGGACGTAGATGGCAGTGTTGTATCCACACATAATATTTCTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGAGGACGTAGATGGCAGTGTTGTATCCACACATAATATTTCTAGG  300

seq1  CATTGTATATCTTTAAAATAAGGCAGAAAATAAAGATGTAAAATAGTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTATATCTTTAAAATAAGGCAGAAAATAAAGATGTAAAATAGTTAA  350

seq1  CTTACTGAGTATATTAAGTCTCACTGCTTGGATCATCAATTGTGGAATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGAGTATATTAAGTCTCACTGCTTGGATCATCAATTGTGGAATCT  400

seq1  AAGACAATAGTAAAAAGAGGTAAAAAGGCAGCAACCACCACATCTCCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAATAGTAAAAAGAGGTAAAAAGGCAGCAACCACCACATCTCCATC  450

seq1  CTTGTATACACTGGTGTTTGTCTTTGCAGCACAGTCAGAGCGGTCAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATACACTGGTGTTTGTCTTTGCAGCACAGTCAGAGCGGTCAAAGG  500

seq1  AGTAGACATAACTGGAATACTGCAGGAACATAAAAATCAGAAGGAGCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGACATAACTGGAATACTGCAGGAACATAAAAATCAGAAGGAGCATC  550

seq1  ATAGAAGTATCTGCAAAGTTTAAGTCTGTGTAGAGGTTGAATTTTCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGTATCTGCAAAGTTTAAGTCTGTGTAGAGGTTGAATTTTCAAAG  600

seq1  CCAGGAGGTATATACATATCCGATGAATTTGTATCAATTCATGCCAATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGGTATATACATATCCGATGAATTTGTATCAATTCATGCCAATTC  650

seq1  CAATTTTGTTGTTGATTATGATGGTTACTCTTATTCCCATGGCTTCCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTGTTGTTGATTATGATGGTTACTCTTATTCCCATGGCTTCCTCA  700

seq1  ACTCAGTTTTCAAATATCCCCTGGAGGATTCTGGAAAACTTTCTTTCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTTTTCAAATATCCCCTGGAGGATTCTGGAAAACTTTCTTTCCTG  750

seq1  GAACTCCACCTTTGAGGTTCAACTTGCAGGCAAAATACACAATATGGAAA  800
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAACTCCACCTTTGAGGTTCAACTTGCA-GCAAAATACACAATATGGAAA  799

seq1  ACATG-TTTGAGGCTTGTCATCTCTAGTCTCAGGTGCCATGATTTCATCC  849
      ||||| |||||||||||||||||||||||||| |||||||||||||||||
seq2  ACATGTTTTGAGGCTTGTCATCTCTAGTCTCA-GTGCCATGATTTCATCC  848

seq1  AGTTCTGTTAACAACAGTGCTCCTGAGGTCAAGTCCCCTTGGGAAGACTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGTTAACAACAGTGCTCCTGAGGTCAAGTCCCCTTGGGAAGACTT  898

seq1  GACCAAGCTGATGTCAAAAAACTTACCTTCTGCTGTGGATGAAAATATTG  949
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GACCAAGCTGATGTCAAAAAACTTACCTTCTGCTGT-GATGAAAATATTG  947

seq1  TCATAAGGGATGGGGATGTATCTCAACTGACAGTATGCTTTCCTATCATG  999
      |||||| |||||||||||||||||||||||||||||||||| ||||||||
seq2  TCATAA-GGATGGGGATGTATCTCAACTGACAGTATGCTTT-CTATCATG  995

seq1  GAAAAAGTCCTGGGAGTAATCACCAGAAATGCATAAACT-GTGCATTGTT  1048
         |||||| ||||||||| ||||||||||||||||||| ||||| ||||
seq2  ---AAAGTCTTGGGAGTAA-CACCAGAAATGCATAAACTGGTGCA-TGTT  1040

seq1  TTAAACATCTGTAATCCCAGCACTGGGGATCA  1080
      || ||| |||||||| ||||  ||||||||||
seq2  TT-AACCTCTGTAAT-CCAGTCCTGGGGATCA  1070