BAC Information

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BAC

Clone NameB6Ng01-029M08
Chromosome8 (Build37)
Map Location 18,272,120 - 18,378,436
singlet/doubletdoublet
Overlap geneLOC100040466
Upstream geneCsmd1, LOC665638
Downstream geneMcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029M08.bB6Ng01-029M08.g
ACCDH859876DH859877
length1,0871,020
definitionDH859876|Mus musculus domesticus DNA, BAC clone: B6Ng01-029M08, 5' end.DH859877|Mus musculus domesticus DNA, BAC clone: B6Ng01-029M08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,272,120 - 18,273,217)(18,377,399 - 18,378,436)
sequence
gaattcagaagttccaagaaggttaataaaaaggcacgtgtattaacagg
ataggctcgaggaaaggctttgggatgtagacacatgaaaatgaaatgta
ggaatagattttgtgtattttccaacatagtagaaggaactagacctgta
aaaaaatttctacctcatgctaggacgagacagtaaggtcattttatctg
agactgaaaagaaagaagacattttctgcaactaaaccacaataccgtgt
gacttttgaggattgcattggcactaagatctgaaaagtgcaagagatat
ttgcttctgtagtacctgtacgcgaaagagtttagacggcgtgataaaag
gaaagggattaaaccaaggagatagcagcggtaatgctcagccatttctc
aaattttacatggactcttgtgtttttccaggtcatatctgagaagtgag
cctttgcttttaggcttggagagaaggccgacagtgtttgcatgggggaa
acatggggcaatgcagttggcccaaatggcatgagaacccaaaaagagaa
aattcataaaaatcgatatttatacaaaacaactggttgagaagacaaca
aacttcctagacaaggaaaaaaaagcatctaagttgccagagctttatga
tgccattaaggaagacttagtaacctgcaactgttatatgtttgcatact
gttgcctctgcttagtatttattcagacaaaataattagcaaatctacct
gaaacatggagtcattgttcaaatctgatcagctgaaaagacttaaactg
tcatggatctgaacagcaaacaccatcagttctgacgcatgatttgtcct
gtaatggacaaaagcccttcacctaacattacagggctgggggaggcagc
ccagttggtaagatgcttgccacatgagtgtgagacctgagttctaaccc
tagcagtacgtgaaaagccaagcatggtagtacacttatagtccagctca
gagagaggtgcagacaggtggcctgcatctagtctgctctgtggagcttc
atgatcagaagatctttctgtctcaaacaatacggtg
gaattcactatatagagcaggctggacttgaactcacagagacccatctg
cttttgcttcctaaatgctggaattaaagacatgtgtcaggctggcgaga
tgggtcagccgttaagagcactgactgttcttctgagggtcctgagttca
aatcccaacaaccacatggtggctcacaaccaccagtaatgagatctgac
accctcttctggtgcgtctgaagtcagctatagagtagttatgtttaatg
ataaataaattttttgggctggagatagcggggagatgcaaatatatata
tgtattaagttatagaagcttgtaattactgccgattcaaggcattggat
agtgtaaacactcagatactccccaggaagagttgcttcctggggctcat
aaaaaggctcaggtgttaaaaatatctagctatgaaattatgaggattat
catttgtgtgatatgagagagtggtcctgggcatgtctatcccagccctg
aggtaggcagtgatgagaggctcatagcagaacaaacaacaaaatgtgag
caaggaacaaggccttcttctgaccccccccccccacatacatgttcata
aaccacacaggcacatgcacacagacatgcacacaggcacacatgtacat
aaataagtccatataaagcctctctctcccattgattgtaacacctactt
tcttctcctagagtctgtactcatcattatgagactacaccgttatgaga
aatattaacaacgtggataaacacaatagatttttttcacaacacacatt
tgaaaagtgttcagattaaaattatgttgctatgtcaattatgcctaaat
caaattgtaaagttacattaatattaattttactttaaataaatatatag
cttagggaattttatggtgaaaataaaacaagaaatattggaatcataaa
gcctcagttattatttagcagtactatttaaaccaggtgatttatgtttt
tttccttaaattcatttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_18272120_18273217
seq2: B6Ng01-029M08.b_44_1130

seq1  GAATTCAGAAGTTCCAAGAAGGTTAATAAAAAGGCACGTGTATTAACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGTTCCAAGAAGGTTAATAAAAAGGCACGTGTATTAACAGG  50

seq1  ATAGGCTCGAGGAAAGGCTTTGGGATGTAGACACATGAAAATGAAATGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTCGAGGAAAGGCTTTGGGATGTAGACACATGAAAATGAAATGTA  100

seq1  GGAATAGATTTTGTGTATTTTCCAACATAGTAGAAGGAACTAGACCTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGATTTTGTGTATTTTCCAACATAGTAGAAGGAACTAGACCTGTA  150

seq1  AAAAAATTTCTACCTCATGCTAGGACGAGACAGTAAGGTCATTTTATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTTCTACCTCATGCTAGGACGAGACAGTAAGGTCATTTTATCTG  200

seq1  AGACTGAAAAGAAAGAAGACATTTTCTGCAACTAAACCACAATACCGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAAAAGAAAGAAGACATTTTCTGCAACTAAACCACAATACCGTGT  250

seq1  GACTTTTGAGGATTGCATTGGCACTAAGATCTGAAAAGTGCAAGAGATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTGAGGATTGCATTGGCACTAAGATCTGAAAAGTGCAAGAGATAT  300

seq1  TTGCTTCTGTAGTACCTGTACGCGAAAGAGTTTAGACGGCGTGATAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCTGTAGTACCTGTACGCGAAAGAGTTTAGACGGCGTGATAAAAG  350

seq1  GAAAGGGATTAAACCAAGGAGATAGCAGCGGTAATGCTCAGCCATTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGATTAAACCAAGGAGATAGCAGCGGTAATGCTCAGCCATTTCTC  400

seq1  AAATTTTACATGGACTCTTGTGTTTTTCCAGGTCATATCTGAGAAGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTACATGGACTCTTGTGTTTTTCCAGGTCATATCTGAGAAGTGAG  450

seq1  CCTTTGCTTTTAGGCTTGGAGAGAAGGCCGACAGTGTTTGCATGGGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCTTTTAGGCTTGGAGAGAAGGCCGACAGTGTTTGCATGGGGGAA  500

seq1  ACATGGGGCAATGCAGTTGGCCCAAATGGCATGAGAACCCAAAAAGAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGGCAATGCAGTTGGCCCAAATGGCATGAGAACCCAAAAAGAGAA  550

seq1  AATTCATAAAAATCGATATTTATACAAAACAACTGGTTGAGAAGACAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATAAAAATCGATATTTATACAAAACAACTGGTTGAGAAGACAACA  600

seq1  AACTTCCTAGACAAGGAAAAAAAAGCATCTAAGTTGCCAGAGCTTTATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCTAGACAAGGAAAAAAAAGCATCTAAGTTGCCAGAGCTTTATGA  650

seq1  TGCCATTAAGGAAGACTTAGTAACCTGCAACTGTTATATGTTTGCATACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTAAGGAAGACTTAGTAACCTGCAACTGTTATATGTTTGCATACT  700

seq1  GTTGCCTCTGCTTAGTATTTATTCAGACAAAATAATTAGCAAATCTACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTCTGCTTAGTATTTATTCAGACAAAATAATTAGCAAATCTACCT  750

seq1  GAAACATGGAGTCATTGTTCAAATCTGATCAGCTGAAAAGACTTAAACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATGGAGTCATTGTTCAAATCTGATCAGCTGAAAAGACTTAAACTG  800

seq1  TCATGGATCTGAACAGCAAACACCATCAGTTCTGACGCATGATTTGTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGATCTGAACAGCAAACACCATCAGTTCTGACGCATGATTTGTCCT  850

seq1  GTAATGGACAAAAGCCCTTCAACCTAACATTACAGGGCTGGGGGAGGCAG  900
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTAATGGACAAAAGCCCTTC-ACCTAACATTACAGGGCTGGGGGAGGCAG  899

seq1  CCCAGTTGGTAAGATGCTTGCCACATGAGTGTGAGACCTGAGTTCTAACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTGGTAAGATGCTTGCCACATGAGTGTGAGACCTGAGTTCTAACC  949

seq1  CTAGCAGTAACGTGAAAAAGCCAAGCATGGTAGTACACTTATAAGTCCAG  1000
      |||||||| ||||| ||||||||||||||||||||||||||| |||||||
seq2  CTAGCAGT-ACGTG-AAAAGCCAAGCATGGTAGTACACTTAT-AGTCCAG  996

seq1  CTCAGAAGAGAAGGGTGCAGACAGGTGGCCTGCCAATCTAGTCTGCTCTG  1050
      ||||| |||||  ||||||||||||||||||||  |||||||||||||||
seq2  CTCAG-AGAGA--GGTGCAGACAGGTGGCCTGC--ATCTAGTCTGCTCTG  1041

seq1  T-GAGCTTCATGATCAAGGAGGGATCTTTCTGTCTCAAACAATAAGGTG  1098
      | ||||||||||||||  ||  |||||||||||||||||||||| ||||
seq2  TGGAGCTTCATGATCA--GA-AGATCTTTCTGTCTCAAACAATACGGTG  1087

seq1: chr8_18377399_18378436
seq2: B6Ng01-029M08.g_70_1089 (reverse)

seq1  AAAAAATGAATTTTTAAAGGAAAAAAACATTAAATTCACCTGGTTTAAAA  50
      |||||||||||||   ||||||||||||||  || ||||||||||| |||
seq2  AAAAAATGAATTT---AAGGAAAAAAACAT--AAATCACCTGGTTT-AAA  44

seq1  TAGTAACTGGCTTAAAATAATAACTGAGGCTTTATTGATTCCAATATTTT  100
      |||| ||| |||  |||||||||||||||||||| |||||||||||||| 
seq2  TAGT-ACT-GCT--AAATAATAACTGAGGCTTTA-TGATTCCAATATTT-  88

seq1  CTTTGTTTTATTTTCACCATTAAAAATTCCCTAAGCTATATATTTTATTT  150
        ||||||||||||||||||  |||||||||||||||||||||||   ||
seq2  -CTTGTTTTATTTTCACCAT--AAAATTCCCTAAGCTATATATTT--ATT  133

seq1  TAAAGTAAAATTAATATTAATGTAACTTTACAATTTGATTTAGGCATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTAAAATTAATATTAATGTAACTTTACAATTTGATTTAGGCATAAT  183

seq1  TGACATAGCAACATAATTTTAATCTGAACACTTTTCAAATGTGTGTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATAGCAACATAATTTTAATCTGAACACTTTTCAAATGTGTGTTGTG  233

seq1  AAAAAAATCTATTGTGTTTATCCACGTTGTTTAATATTTCTCATAACGGT  300
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAAAAAATCTATTGTGTTTATCCACGTTG-TTAATATTTCTCATAACGGT  282

seq1  GTAGTCTCATAATGATGAGTACAGACTCTAGGAGAAGAAAGTAGGTGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCTCATAATGATGAGTACAGACTCTAGGAGAAGAAAGTAGGTGTTA  332

seq1  CAATCAATGGGAGAGAGAGGCTTTATATGGACTTATTTATGTACATGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAATGGGAGAGAGAGGCTTTATATGGACTTATTTATGTACATGTGT  382

seq1  GCCTGTGTGCATGTCTGTGTGCATGTGCCTGTGTGGTTTATGAACATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGTGCATGTCTGTGTGCATGTGCCTGTGTGGTTTATGAACATGTA  432

seq1  TGTGGGGGGGGGGGGTCAGAAGAAGGCCTTGTTCCTTGCTCACATTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGGGGGGGGGTCAGAAGAAGGCCTTGTTCCTTGCTCACATTTTGT  482

seq1  TGTTTGTTCTGCTATGAGCCTCTCATCACTGCCTACCTCAGGGCTGGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTCTGCTATGAGCCTCTCATCACTGCCTACCTCAGGGCTGGGAT  532

seq1  AGACATGCCCAGGACCACTCTCTCATATCACACAAATGATAATCCTCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGCCCAGGACCACTCTCTCATATCACACAAATGATAATCCTCATA  582

seq1  ATTTCATAGCTAGATATTTTTAACACCTGAGCCTTTTTATGAGCCCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATAGCTAGATATTTTTAACACCTGAGCCTTTTTATGAGCCCCAGG  632

seq1  AAGCAACTCTTCCTGGGGAGTATCTGAGTGTTTACACTATCCAATGCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACTCTTCCTGGGGAGTATCTGAGTGTTTACACTATCCAATGCCTT  682

seq1  GAATCGGCAGTAATTACAAGCTTCTATAACTTAATACATATATATATTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCGGCAGTAATTACAAGCTTCTATAACTTAATACATATATATATTTG  732

seq1  CATCTCCCCGCTATCTCCAGCCCAAAAAATTTATTTATCATTAAACATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCCCGCTATCTCCAGCCCAAAAAATTTATTTATCATTAAACATAA  782

seq1  CTACTCTATAGCTGACTTCAGACGCACCAGAAGAGGGTGTCAGATCTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCTATAGCTGACTTCAGACGCACCAGAAGAGGGTGTCAGATCTCAT  832

seq1  TACTGGTGGTTGTGAGCCACCATGTGGTTGTTGGGATTTGAACTCAGGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTGGTTGTGAGCCACCATGTGGTTGTTGGGATTTGAACTCAGGAC  882

seq1  CCTCAGAAGAACAGTCAGTGCTCTTAACGGCTGACCCATCTCGCCAGCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAAGAACAGTCAGTGCTCTTAACGGCTGACCCATCTCGCCAGCCT  932

seq1  GACACATGTCTTTAATTCCAGCATTTAGGAAGCAAAAGCAGATGGGTCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATGTCTTTAATTCCAGCATTTAGGAAGCAAAAGCAGATGGGTCTC  982

seq1  TGTGAGTTCAAGTCCAGCCTGCTCTATATAGTGAATTC  1038
      ||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTTCAAGTCCAGCCTGCTCTATATAGTGAATTC  1020