BAC Information

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BAC

Clone NameB6Ng01-030L16
Chromosome8 (Build37)
Map Location 39,399,781 - 39,400,867
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621149, Sgcz
Downstream geneTusc3, LOC100038974, LOC632066, EG621335
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030L16.bB6Ng01-030L16.g
ACCDH860546DH860547
length1,060907
definitionDH860546|Mus musculus domesticus DNA, BAC clone: B6Ng01-030L16, 5' end.DH860547|Mus musculus domesticus DNA, BAC clone: B6Ng01-030L16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaccaaaaagttggataaattagactaacatatactatagttctt
aagagaaaactttggatccttacacttttgattttaatgcaaatatttca
taacttcagaatcataaacattagtgaatagatttttaaaataatatatg
cttttattttaatatataaattcatttttaacaatatacatgtaaaaata
agtttataatgtcatatcgaacgactttgtcaatgacttttactaacaat
ttttttgatctagctatgttaattaaactaaactggatacatggagtaat
taaaaatagccaggtggtagtgcatgcctctaatcccattcctctggagg
cagagacaggtggatctctgagtttgaggccagccttgttaatgagtaag
tgccaagacagtcagagctacacagaaaaagatcctatcttgacaaaacc
aaaccaaaataccctttttgtaaaactttttgaggtgtatttcttggtta
atttgttttgtaggtaccattgctatgaaaaggttttgaaacttcacatg
taatggtgggagcatcgttgatatgctgcatttctttccatgatgaataa
tgaataatgatacttttcatggtcctaataaacttctagcaaactgttgt
aactgcacgataaatgaaaataaccttctggtgctgatggaaaaaatgtt
gaaattatttcttaaaattacaaacagatttaaagctctcacagtatcaa
ctaattgaaagacaaagtaaagtttcaaaacacactatacaaaggaacct
gatttttttttttaattttacaaacatagttttgactttgagttaaatga
tacacgagaggagagagaagttaaaataaagggagcaaacagagggaaga
aacacagaaacacgatcagcatggcaaacatcctgaagctgcacagtggt
atcacatactgtagtacagcagctcttccgtggtttaggtcattatcaaa
gtaatcatgactagtactgaaattatccaccctgttagtaatgtgataga
ttagaggaca

gaattctttgtttagttctataccccattttttttattgtgttttgtttt
gtggaggttaatttcttgagttctttggctggatataaaattaaagcaaa
gaaattagtagccttactttatacaaatgataaatgggctgtggaaaaat
atagggaaacaatgcccttcacaacagtcataaataatataaaatatctt
gggagtaactctaaccaaacaagtgaaagatctgtatgacaataacttca
agtgtctcaggaaagaaatcgatgatgatctcagaaaatggagagatccc
aaatgttcatgtattggtaggattaacatagtgaaaatgaccttcctatc
aaaagcaatctacagattcaacacagtccccataaaaatttcaacacaac
tcttcaaagacatggaaagagcaattctcaatttcatatagaaattaaaa
aaaacacagcatagcaaaatcaattctaaacaataaaagaacttcagggg
aaatcaccatccctgatctcaagctgtattacagagcaatagtcataaaa
actgcatggtattggtattgagacagataggttgatcaatggaataaaac
tgaagacccaagacttgaaaacccagaaataaaaccacacacatatgaac
aattgatctttgagaaaaaagccaaaaatatacaatagaaaaaagaaagc
atcttcaataaatggttttggcctaactggcagtctgtatgtagatgaat
gaaaatagatccatatttgtcaccttgcacaaatctcaagtccaagtgga
tcaaagacctcaacataaaactagatatactgaatataatagagagaaag
tgggtaagagtgttgaactcattggcatggggcagagttgaaggggggat
ggggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_39399781_39400867
seq2: B6Ng01-030L16.b_45_1104

seq1  GAATTCACCAAAAAGTTGGATAAATTAGACTAACATATACTATAGTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAAAAAGTTGGATAAATTAGACTAACATATACTATAGTTCTT  50

seq1  AAGAGAAAACTTTGGATCCTTACACTTTTGATTTTAATGCAAATATTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAACTTTGGATCCTTACACTTTTGATTTTAATGCAAATATTTCA  100

seq1  TAACTTCAGAATCATAAACATTAGTGAATAGATTTTTAAAATAATATATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCAGAATCATAAACATTAGTGAATAGATTTTTAAAATAATATATG  150

seq1  CTTTTATTTTAATATATAAATTCATTTTTAACAATATACATGTAAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTTTAATATATAAATTCATTTTTAACAATATACATGTAAAAATA  200

seq1  AGTTTATAATGTCATATCGAACGACTTTGTCAATGACTTTTACTAACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATAATGTCATATCGAACGACTTTGTCAATGACTTTTACTAACAAT  250

seq1  TTTTTTGATCTAGCTATGTTAATTAAACTAAACTGGATACATGGAGTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGATCTAGCTATGTTAATTAAACTAAACTGGATACATGGAGTAAT  300

seq1  TAAAAATAGCCAGGTGGTAGTGCATGCCTCTAATCCCATTCCTCTGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAGCCAGGTGGTAGTGCATGCCTCTAATCCCATTCCTCTGGAGG  350

seq1  CAGAGACAGGTGGATCTCTGAGTTTGAGGCCAGCCTTGTTAATGAGTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACAGGTGGATCTCTGAGTTTGAGGCCAGCCTTGTTAATGAGTAAG  400

seq1  TGCCAAGACAGTCAGAGCTACACAGAAAAAGATCCTATCTTGACAAAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGACAGTCAGAGCTACACAGAAAAAGATCCTATCTTGACAAAACC  450

seq1  AAACCAAAATACCCTTTTTGTAAAACTTTTTGAGGTGTATTTCTTGGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAATACCCTTTTTGTAAAACTTTTTGAGGTGTATTTCTTGGTTA  500

seq1  ATTTGTTTTGTAGGTACCATTGCTATGAAAAGGTTTTGAAACTTCACATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTTGTAGGTACCATTGCTATGAAAAGGTTTTGAAACTTCACATG  550

seq1  TAATGGTGGGAGCATCGTTGATATGCTGCATTTCTTTCCATGATGAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTGGGAGCATCGTTGATATGCTGCATTTCTTTCCATGATGAATAA  600

seq1  TGAATAATGATACTTTTCATGGTCCTAATAAACTTCTAGCAAACTGTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAATGATACTTTTCATGGTCCTAATAAACTTCTAGCAAACTGTTGT  650

seq1  AACTGCACGATAAATGAAAATAACCTTCTGGTGCTGATGGAAAAAATGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCACGATAAATGAAAATAACCTTCTGGTGCTGATGGAAAAAATGTT  700

seq1  GAAATTATTTCTTAAAATTACAAACAGATTTAAAGCTCTCACAGTATCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTATTTCTTAAAATTACAAACAGATTTAAAGCTCTCACAGTATCAA  750

seq1  CTAATTGAAAGACAAAGTAAAGTTTCAAAACACACTATACAAAGGAACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGAAAGACAAAGTAAAGTTTCAAAACACACTATACAAAGGAACCT  800

seq1  GATTTTTTTTTTTAATTTTACAAACATAGTTTTGACTTTGAGTTAAATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTTTTTTAATTTTACAAACATAGTTTTGACTTTGAGTTAAATGA  850

seq1  TACACGAGGAGGAGAGAGAAGTTAAAAATAAAGGGGAAGCAAACAGAGGG  900
      ||||||| ||||||||||||||| |||||||||||  |||||||||||||
seq2  TACACGA-GAGGAGAGAGAAGTT-AAAATAAAGGG--AGCAAACAGAGGG  896

seq1  AAGAAACAACAGAAACAACGACCAGCATGGCAAAACATCCTGAAAGCTGC  950
      ||||||| |||||||| |||| ||||||||| |||||||||| |||||||
seq2  AAGAAAC-ACAGAAAC-ACGATCAGCATGGC-AAACATCCTG-AAGCTGC  942

seq1  AACAGTGGTATTCACATACTGGTAGTAACCAGCAGCTCTCCCGTTGGGTT  1000
       ||||||||| ||||||||| ||||||  |||||||||| ||||  ||||
seq2  -ACAGTGGTA-TCACATACT-GTAGTA--CAGCAGCTCTTCCGT--GGTT  985

seq1  TAAGGTCCAATTATCAAAAGTAAAATCATGACTAGTACTGGAAATTTATC  1050
      | |||||  |||||| |||||  |||||||||||||||||  || |||||
seq2  T-AGGTC--ATTATC-AAAGT--AATCATGACTAGTACTG--AAATTATC  1027

seq1  CAACCTCTGATAGTAATGTAGTAGATTTTAGAGGACA  1087
      ||  | ||| |||||||||  ||||  ||||||||||
seq2  CA--CCCTGTTAGTAATGTGATAGA--TTAGAGGACA  1060


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