BAC Information

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BAC

Clone NameB6Ng01-030M12
Chromosome8 (Build37)
Map Location 109,790,661 - 109,895,075
singlet/doubletdoublet
Overlap geneLOC100042791, Nfat5
Upstream geneSmpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b
Downstream geneNqo1, Nob1, Wwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030M12.bB6Ng01-030M12.g
ACCDH860582DH860583
length767965
definitionDH860582|Mus musculus domesticus DNA, BAC clone: B6Ng01-030M12, 5' end.DH860583|Mus musculus domesticus DNA, BAC clone: B6Ng01-030M12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,894,311 - 109,895,075)(109,790,661 - 109,791,631)
sequence
gaattcttcatggaatttctgaagaaaaaaaaaaaaaagtcagtatctca
ttagagaaaaaaaaattgtaaagtatctgttaccatgagtggctccaact
gtcctatgtagggaacttcatcatattcaatctttcttgcttttttggtg
gtgttgggtactgaacctagggcgtcaaatatgctgcgcaagtacccaac
caagatatagccccagattataagatttgttattctgtaaaattttttct
tctttcatgctctccttttctactatgattggatctagggccttatatgc
tagcctgatattctgtcactctaaatgaaagaagctctcagccagaagga
atgcccagtatttcctacctaatctaagctgtcattcagagtgacttact
caaagtgaaggtcctattttaactaaccgtaaaagctaaacagtgctcct
aatccgagtctgttgtgagtaaaatttagtaacgcttttcactaagagac
caaatgtaatacttacatctcactaaaaggagccggttaaattgttccct
tggctttgcaatgaaacaagcaaatcaatcttttccatgttctgactgct
gtttcacagaggaggccagtggggaagtctctggcatttgctgagaaaag
aagtgttgtcacaaaaaattggccctcatttttgtggttggccctgctga
tttatggccatcactgatctgggcaatgtagctgggccggaggttaaagc
tgactacaatctgaaaa
gaattccaggctagcctggtatacagagcaagtcccaagataaccaaagc
cacacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaaaaagtg
tttttttttaaatctatagttttaagagctggtgaaatggatcagtaggt
aaaaggtactagcagctagtagccaaaaccatcaatttgaatttgatcct
taggacccacatggtggaaagagagctgattcccacaagttatcccctgt
cctcaactcaaatgctatggcacacacatacacacatgcataccaacaac
caaccaaccaaccaactaatcaatcaatcaatcaatcaatcagtcaagta
aacttgcatacacacacacacacacacacacacacacacacacatgcaca
cacacacacacaatgtctatagttttgagaaattctgtattctgttgagg
atctcaaagctttgaaggacagttctagctctgttttgttcaacattaac
tacaggtttcttatagcatctgccatagaaaaggcatttggtatgggact
gagaaatgacacttgcctataataaaaacctgttcatcagggactttgat
ggcatcaaattgaatgtccctccccaaatctacttttttttttttttaag
aaagtgtagcccaggctggcctcaagctcacaactctatgctttagccta
caaagtgctataccaatcaaagctcgttgttctcaagcgctgaacctaca
gaagtatatcccggatgcatgaagaacttgtgaatgcctgatggacacac
tcattcacccactcttcatccaccttgacccaaatgggcttctctggtaa
caaacaaacacttctgcatgggtcttcggaaaacagttttcagttttcca
ctgcctagataagtgatcttatgatttgcaagtctttctggacctgatgc
agtttgggaacaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_109894311_109895075
seq2: B6Ng01-030M12.b_35_801 (reverse)

seq1  TTTTCAGATTGTAGTCAGCTTTTAACCTCCGGACCAGCTACATTG-CCAG  49
      ||||||||||||||||||| |||||||||||| |||||||||||| ||||
seq2  TTTTCAGATTGTAGTCAGC-TTTAACCTCCGGCCCAGCTACATTGCCCAG  49

seq1  ATCAGCTGATGGCCATAAATCAGCAGGGCCAACCAC-AAAATGAGGGCCA  98
      ||||| |||||||||||||||||||||||||||||| |||||||||||||
seq2  ATCAG-TGATGGCCATAAATCAGCAGGGCCAACCACAAAAATGAGGGCCA  98

seq1  ATCTTCTGTGACAACACTTC-TTTCTCAGCAAATGCCAGAGACTTCCCCA  147
      || || |||||||||||||| |||||||||||||||||||||||||||||
seq2  ATTTTTTGTGACAACACTTCTTTTCTCAGCAAATGCCAGAGACTTCCCCA  148

seq1  CTGGCCTCCTCTGTG-AACAGCAGTCAGAACATGGAAAAGATTGATTTGC  196
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCCTCTGTGAAACAGCAGTCAGAACATGGAAAAGATTGATTTGC  198

seq1  TTGTTTCATTGCAAAGCCAAGGGAACAATTTAACCGGCTCCTTTTAGTGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCATTGCAAAGCCAAGGGAACAATTTAACCGGCTCCTTTTAGTGA  248

seq1  GATGTAAGTATTACATTTGGTCTCTTAGTGAAAAGCGTTACTAAATTTTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAAGTATTACATTTGGTCTCTTAGTGAAAAGCGTTACTAAATTTTA  298

seq1  CTCACAACAGACTCGGATTAGGAGCACTGTTTAGCTTTTACGGTTAGTTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAACAGACTCGGATTAGGAGCACTGTTTAGCTTTTACGGTTAGTTA  348

seq1  AAATAGGACCTTCACTTTGAGTAAGTCACTCTGAATGACAGCTTAGATTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGACCTTCACTTTGAGTAAGTCACTCTGAATGACAGCTTAGATTA  398

seq1  GGTAGGAAATACTGGGCATTCCTTCTGGCTGAGAGCTTCTTTCATTTAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGAAATACTGGGCATTCCTTCTGGCTGAGAGCTTCTTTCATTTAGA  448

seq1  GTGACAGAATATCAGGCTAGCATATAAGGCCCTAGATCCAATCATAGTAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGAATATCAGGCTAGCATATAAGGCCCTAGATCCAATCATAGTAG  498

seq1  AAAAGGAGAGCATGAAAGAAGAAAAAATTTTACAGAATAACAAATCTTAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAGAGCATGAAAGAAGAAAAAATTTTACAGAATAACAAATCTTAT  548

seq1  AATCTGGGGCTATATCTTGGTTGGGTACTTGCGCAGCATATTTGACGCCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGGGCTATATCTTGGTTGGGTACTTGCGCAGCATATTTGACGCCC  598

seq1  TAGGTTCAGTACCCAACACCACCAAAAAAGCAAGAAAGATTGAATATGAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTCAGTACCCAACACCACCAAAAAAGCAAGAAAGATTGAATATGAT  648

seq1  GAAGTTCCCTACATAGGACAGTTGGAGCCACTCATGGTAACAGATACTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCCCTACATAGGACAGTTGGAGCCACTCATGGTAACAGATACTTT  698

seq1  ACAATTTTTTTTTCTCTAATGAGATACTGACTTTTTTTTTTTTTTCTTCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTTTTTTTCTCTAATGAGATACTGACTTTTTTTTTTTTTTCTTCA  748

seq1  GAAATTCCATGAAGAATTC  765
      |||||||||||||||||||
seq2  GAAATTCCATGAAGAATTC  767

seq1: chr8_109790661_109791631
seq2: B6Ng01-030M12.g_69_1033

seq1  GAATTCCAGGCTAGCCTGGTATACAGAGCAAGTCCCAAGATAACCAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCTAGCCTGGTATACAGAGCAAGTCCCAAGATAACCAAAGC  50

seq1  CACACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAAAAAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAAAAAGTG  100

seq1  TTTTTTTTTAAATCTATAGTTTTAAGAGCTGGTGAAATGGATCAGTAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTAAATCTATAGTTTTAAGAGCTGGTGAAATGGATCAGTAGGT  150

seq1  AAAAGGTACTAGCAGCTAGTAGCCAAAACCATCAATTTGAATTTGATCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTACTAGCAGCTAGTAGCCAAAACCATCAATTTGAATTTGATCCT  200

seq1  TAGGACCCACATGGTGGAAAGAGAGCTGATTCCCACAAGTTATCCCCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACCCACATGGTGGAAAGAGAGCTGATTCCCACAAGTTATCCCCTGT  250

seq1  CCTCAACTCAAATGCTATGGCACACACATACACACATGCATACCAACAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAACTCAAATGCTATGGCACACACATACACACATGCATACCAACAAC  300

seq1  CAACCAACCAACCAACTAATCAATCAATCAATCAATCAATCAGTCAAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAACCAACCAACTAATCAATCAATCAATCAATCAATCAGTCAAGTA  350

seq1  AACTTGCAT----ACACACACACACACACACACACACACACACATGCACA  396
      |||||||||    |||||||||||||||||||||||||||||||||||||
seq2  AACTTGCATACACACACACACACACACACACACACACACACACATGCACA  400

seq1  CACACACACACAATGTCTATAGTTTTGAGAAATTCTGTATTCTGTTGAGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACAATGTCTATAGTTTTGAGAAATTCTGTATTCTGTTGAGG  450

seq1  ATCTCAAAGCTTTGAAGGACAGTTCTAGCTCTGTTTTGTTCAACATTAAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAAGCTTTGAAGGACAGTTCTAGCTCTGTTTTGTTCAACATTAAC  500

seq1  TACAGGTTTCTTATAGCATCTGCCATAGAAAAGGCATTTGGTATGGGACT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGTTTCTTATAGCATCTGCCATAGAAAAGGCATTTGGTATGGGACT  550

seq1  GAGAAATGACACTTGCCTATAATAAAAACCTGTTCATCAGGGACTTTGAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGACACTTGCCTATAATAAAAACCTGTTCATCAGGGACTTTGAT  600

seq1  GGCATCAAATTGAATGTCCCTCCCCAAATCTAC--TTTTTTTTTTTTAAG  644
      |||||||||||||||||||||||||||||||||  |||||||||||||||
seq2  GGCATCAAATTGAATGTCCCTCCCCAAATCTACTTTTTTTTTTTTTTAAG  650

seq1  AAAGTGTAGCCCAGGCTGGCCTCAAGCTCACAACTCTATGCTTTAGCCTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTAGCCCAGGCTGGCCTCAAGCTCACAACTCTATGCTTTAGCCTA  700

seq1  CAAAGTGCTATACCAATCAAAGCTCGTTGTTTCTCAAGCGCTGAACCTAC  744
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAAAGTGCTATACCAATCAAAGCTCGTTG-TTCTCAAGCGCTGAACCTAC  749

seq1  AGTAAGTAGATCCAGGATGCATGAAGAACTTGTGAATGTCTGAATGGACA  794
      || ||||| |||| |||||||||||||||||||||||| ||| |||||||
seq2  AG-AAGTATATCCCGGATGCATGAAGAACTTGTGAATGCCTG-ATGGACA  797

seq1  CACTCAGTCACCCACTCTTCCATCCATCCTTGACCCAAATGGGC-TCTCA  843
      |||||| |||||||||||| |||||| ||||||||||||||||| |||| 
seq2  CACTCATTCACCCACTCTT-CATCCA-CCTTGACCCAAATGGGCTTCTC-  844

seq1  TGTAAACAAACAAACACCTCAGCAGTGGTCTTCGGAAACACAG-TTTCAG  892
      ||  ||||||||||||| || |||  |||||||||||| |||| ||||||
seq2  TGGTAACAAACAAACACTTCTGCATGGGTCTTCGGAAA-ACAGTTTTCAG  893

seq1  TTTTCCCACTGCCTAGATAAGTGATCTTATGAATTTGACAAGTCTTTTTC  942
      |||| |||||||||||||||||||||||||| ||||| ||||||  ||||
seq2  TTTT-CCACTGCCTAGATAAGTGATCTTATG-ATTTG-CAAGTC--TTTC  938

seq1  TGGACCTGAATGCAGTTATGGAAACAGGT  971
      |||||||| |||||||| ||| |||||||
seq2  TGGACCTG-ATGCAGTT-TGGGAACAGGT  965