BAC Information

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BAC

Clone NameB6Ng01-033J09
Chromosome8 (Build37)
Map Location 111,958,980 - 112,112,336
singlet/doubletdoublet
Overlap geneLOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp
Upstream geneAtbf1, 4922502B01Rik, Gm1943
Downstream geneDhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, Hydin, LOC672398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033J09.bB6Ng01-033J09.g
ACCDH862592DH862593
length845157
definitionDH862592|Mus musculus domesticus DNA, BAC clone: B6Ng01-033J09, 5' end.DH862593|Mus musculus domesticus DNA, BAC clone: B6Ng01-033J09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,111,493 - 112,112,336)(111,958,980 - 111,959,136)
sequence
gaattctgtcttttcttgtgtgtgtttgctctgtcagtctttaaacctgt
ttatataccgtgttttgatttctttcactcttttttttttaaaaagattt
cttaggtatgtgagtacactgtcactctcttcagacacaccagaagaggg
cttcagatctcatatcagatagtcgtgagccaccatgtggttgctgggaa
ttgaactcaggacctcaagaagagcagccagtgttcttaactgctgagcc
aattctctggccctttgatttatttctaagcacttagtaacttgaactat
ttaatagttatttaagataagtgcatcgaagaagatgaacattctctcat
gtgcaagcatattcaggggccacctactggcccacactccttccccagct
tgctagtctcctttagtctagaatagtaacccccggagagaggctacctg
tcctgtagtcagttcgacattctggattcctggattgaagactcatttcc
tgatctctgagctatctgagtttggtcatatgacccttctatccagtgtg
aaggccttgggtcgtctttcagggaggtctcctgctaaaaccttagcatg
gtggccagagctctggcatctactttagccttggggatcagggtcaccct
caagagatgacagtggcagggcagaaagagctttcacggaactgtcagtg
ggagctctgtctcctcccttgcttctactgctgtgtggtaaactattttc
tttcacccgcagccaaactttaccccgggtagtgaggagaggcgttgagg
tctctcctaatcatggactgggcctggaagagatgctatttgctt
ctactgctcctttaagagccaacataaatgtcacctctaaataataactg
ctgacatttcctcggtgtttgctctgagctgggcactttgctaagggctt
cttgggattttctcaagagaaagaatgaaaagaagggaggggaggaggga
tggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_112111493_112112336
seq2: B6Ng01-033J09.b_48_892 (reverse)

seq1  AAGCAAATAGCATCTCTTCCAGGCCCAGTCCATGATTAGGAGAGACCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAATAGCATCTCTTCCAGGCCCAGTCCATGATTAGGAGAGACCTCA  50

seq1  ACGCCTCTCCTCACTACCCGGGGTTAAGTTTGGCTGCGGGTGAAAGAAAA  100
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACGCCTCTCCTCACTACCCGGGGTAAAGTTTGGCTGCGGGTGAAAGAAAA  100

seq1  TAGTTTACCACACAGCAGTAGAAGCAAGGGAGGAGACAGAGCTCCCACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTACCACACAGCAGTAGAAGCAAGGGAGGAGACAGAGCTCCCACTG  150

seq1  ACAGTTCCGTG-AAGCTCTTTCTGCCCTGCCACTGTCATCTCTTGAGGGT  199
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCCGTGAAAGCTCTTTCTGCCCTGCCACTGTCATCTCTTGAGGGT  200

seq1  GACCCTGATCCCCAAGGCTAAAGTAGATGCCAGAGCTCTGGCCACCATGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGATCCCCAAGGCTAAAGTAGATGCCAGAGCTCTGGCCACCATGC  250

seq1  TAAGGTTTTAGCAGGAGACCTCCCTGAAAGACGACCCAAGGCCTTCACAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTTTAGCAGGAGACCTCCCTGAAAGACGACCCAAGGCCTTCACAC  300

seq1  TGGATAGAAGGGTCATATGACCAAACTCAGATAGCTCAGAGATCAGGAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAGAAGGGTCATATGACCAAACTCAGATAGCTCAGAGATCAGGAAA  350

seq1  TGAGTCTTCAATCCAGGAATCCAGAATGTCGAACTGACTACAGGACAGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTTCAATCCAGGAATCCAGAATGTCGAACTGACTACAGGACAGGT  400

seq1  AGCCTCTCTCCGGGGGTTACTATTCTAGACTAAAGGAGACTAGCAAGCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTCTCCGGGGGTTACTATTCTAGACTAAAGGAGACTAGCAAGCTG  450

seq1  GGGAAGGAGTGTGGGCCAGTAGGTGGCCCCTGAATATGCTTGCACATGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGAGTGTGGGCCAGTAGGTGGCCCCTGAATATGCTTGCACATGAG  500

seq1  AGAATGTTCATCTTCTTCGATGCACTTATCTTAAATAACTATTAAATAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTTCATCTTCTTCGATGCACTTATCTTAAATAACTATTAAATAGT  550

seq1  TCAAGTTACTAAGTGCTTAGAAATAAATCAAAGGGCCAGAGAATTGGCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTACTAAGTGCTTAGAAATAAATCAAAGGGCCAGAGAATTGGCTC  600

seq1  AGCAGTTAAGAACACTGGCTGCTCTTCTTGAGGTCCTGAGTTCAATTCCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTAAGAACACTGGCTGCTCTTCTTGAGGTCCTGAGTTCAATTCCC  650

seq1  AGCAACCACATGGTGGCTCACGACTATCTGATATGAGATCTGAAGCCCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCACATGGTGGCTCACGACTATCTGATATGAGATCTGAAGCCCTC  700

seq1  TTCTGGTGTGTCTGAAGAGAGTGACAGTGTACTCACATACCTAAGAAATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTGTGTCTGAAGAGAGTGACAGTGTACTCACATACCTAAGAAATC  750

seq1  TTTTTAAAAAAAAAAGAGTGAAAGAAATCAAAACACGGTATATAAACAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAAAAAAAGAGTGAAAGAAATCAAAACACGGTATATAAACAGG  800

seq1  TTTAAAGACTGACAGAGCAAACACACACAAGAAAAGACAGAATTC  844
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGACTGACAGAGCAAACACACACAAGAAAAGACAGAATTC  845

seq1: chr8_111958980_111959136
seq2: B6Ng01-033J09.g_74_230

seq1  CTACTGCTCCTTTAAGAGCCAACATAAATGTCACCTCTAAATAATAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGCTCCTTTAAGAGCCAACATAAATGTCACCTCTAAATAATAACTG  50

seq1  CTGACATTTCCTCGGTGTTTGCTCTGAGCTGGGCACTTTGCTAAGGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATTTCCTCGGTGTTTGCTCTGAGCTGGGCACTTTGCTAAGGGCTT  100

seq1  CTTGGGATTTTCTCAAGAGAAAGAATGAAAAGAAGGGAGGGGAGGAGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGATTTTCTCAAGAGAAAGAATGAAAAGAAGGGAGGGGAGGAGGGA  150

seq1  TGGAGGA  157
      |||||||
seq2  TGGAGGA  157