BAC Information

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BAC

Clone NameB6Ng01-033L14
Chromosome8 (Build37)
Map Location 81,723,264 - 81,873,530
singlet/doubletdoublet
Overlap gene1700011L22Rik, Mmaa, A630049P17, Smad1
Upstream geneTtc29, Pou4f2, LOC100039422, Rbmxrt, Slc10a7, LOC100039466, Lsm6, EG666340, EG666346, D630040G17Rik
Downstream geneLOC666378, LOC666388, LOC666392, Otud4, Tpd52-ps, Abce1, Anapc10, LOC100039439, Hhip, LOC546075
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033L14.bB6Ng01-033L14.g
ACCDH862694DH862695
length1,057823
definitionDH862694|Mus musculus domesticus DNA, BAC clone: B6Ng01-033L14, 5' end.DH862695|Mus musculus domesticus DNA, BAC clone: B6Ng01-033L14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,723,264 - 81,724,330)(81,872,706 - 81,873,530)
sequence
gaattcttatctatgtacgtgtgtgagtctgtattatacagtctaaagtg
cagggacaagaactttggatttgaagatcaggagtgggtaatgatgaaga
caatgaattctgggtagtggtgggtctcatcccaacatagaatccacaga
agtgtacatgttcacgagagggaggagactctctaaggactgagtaaaat
gcatactgaagaataaagagaaatttcctgagcaggaaacaagagaagaa
tgttccagattgaaagaacagcttgagccaaggcaaggtgaaatctgcct
catggagactgttctgggaaaactacaatgagaccaaacaaaggcagctt
gtgaggggcctcgattgccgagttaaggggaatgaactctacgcccttgc
tactgaaacctctctagtcagtgtggataacaaaatgtgccaagaacgct
gggactgagcacagattccttaactccaataagtatgtacccatcctcca
agacactcaacacgcaaaccttgattccctttgccccctcgtgtctcccc
tccctttctttcctccctctttttggacagcaaatctgtagaaattatgt
ctggttcttttttacagccccatactccgataaataagactccaactcaa
aatatatttacaaatacattggccatgctgctaggctcttctctgacttg
atcataatttgaattatcccatttattctaatctacattctaccgtgagg
atggttaactgtgctcacgtaccatgtgtctgtaccaacgcatcttcctg
ggcaaatctcctgcacatgcctggctctatcccagaattctttctgcctc
ctggatgtccaccttctatctaacctttcttataggccacaggtttttta
ttgacaggtgatacatcctacagcgcatagaatattcgctctgaaaatca
ttactgaccccttatgatttattgtcatctactgaactttacctcagtct
ttccactcgtggatggttgtcttgtaagaacaacttatttctagtgcatg
aggtttt
gaattccactattgaaaacaccaggcgacatattgggaaaggtgagcttt
cccttttctctgcttgcaaacgttcgtctcttattcctctagaagtgact
cagtcattcctgtggcaaatgccagtgaatgttcagacactgctatttga
agacattttccaattcatattattgaagactgtgctaattgatgatctta
gtggttttttcaactctgataatgttgttaggaattagtgcatagtgtgg
cttgctactgtgggcagtactctgatgtttttgttataaaaatatcttat
taagaatttttacatttattgcctatgtgtgcatgcgcctgtgtgcatgt
gtacgtgtgtgctcgagggtcttgatcagaggacagtcagggagtcggtt
ctctccttccatcctgtggccatcagaaatcaaactcaagtcatcagctt
ggtggcaagcactctccccattgagccacgtcgccatcccacctgtcttt
cttaatagacttaattatttattagtggtaaattagaacagttctgtaac
gtttacatgcatttactatatgattaagcaaatggctaaacgtgtaggta
ggtgctcagctcagctttgcctgcgaagtaaggagcatgcagtcatgaag
gagtgtggcatcccttggtagtgtcggtagaaatcataaattaatgacat
ggtgtgtgtttatatgcagttgagcatgtctatatgtgagcctgtctata
tgtgaccctctgaacatttaggtagttttttaccctgtgtaccgaaaggg
aaaaggatcaaatatacaaagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_81723264_81724330
seq2: B6Ng01-033L14.b_39_1095

seq1  GAATTCTTATCTATGTACGTGTGTGAGTCTGTATTATACAGTCTAAAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATCTATGTACGTGTGTGAGTCTGTATTATACAGTCTAAAGTG  50

seq1  CAGGGACAAGAACTTTGGATTTGAAGATCAGGAGTGGGTAATGATGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACAAGAACTTTGGATTTGAAGATCAGGAGTGGGTAATGATGAAGA  100

seq1  CAATGAATTCTGGGTAGTGGTGGGTCTCATCCCAACATAGAATCCACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAATTCTGGGTAGTGGTGGGTCTCATCCCAACATAGAATCCACAGA  150

seq1  AGTGTACATGTTCACGAGAGGGAGGAGACTCTCTAAGGACTGAGTAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACATGTTCACGAGAGGGAGGAGACTCTCTAAGGACTGAGTAAAAT  200

seq1  GCATACTGAAGAATAAAGAGAAATTTCCTGAGCAGGAAACAAGAGAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACTGAAGAATAAAGAGAAATTTCCTGAGCAGGAAACAAGAGAAGAA  250

seq1  TGTTCCAGATTGAAAGAACAGCTTGAGCCAAGGCAAGGTGAAATCTGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCAGATTGAAAGAACAGCTTGAGCCAAGGCAAGGTGAAATCTGCCT  300

seq1  CATGGAGACTGTTCTGGGAAAACTACAATGAGACCAAACAAAGGCAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGACTGTTCTGGGAAAACTACAATGAGACCAAACAAAGGCAGCTT  350

seq1  GTGAGGGGCCTCGATTGCCGAGTTAAGGGGAATGAACTCTACGCCCTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGGCCTCGATTGCCGAGTTAAGGGGAATGAACTCTACGCCCTTGC  400

seq1  TACTGAAACCTCTCTAGTCAGTGTGGATAACAAAATGTGCCAAGAACGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAACCTCTCTAGTCAGTGTGGATAACAAAATGTGCCAAGAACGCT  450

seq1  GGGACTGAGCACAGATTCCTTAACTCCAATAAGTATGTACCCATCCTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGAGCACAGATTCCTTAACTCCAATAAGTATGTACCCATCCTCCA  500

seq1  AGACACTCAACACGCAAACCTTGATTCCCTTTGCCCCCTCGTGTCTCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTCAACACGCAAACCTTGATTCCCTTTGCCCCCTCGTGTCTCCCC  550

seq1  TCCCTTTCTTTCCTCCCTCTTTTTGGACAGCAAATCTGTAGAAATTATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTCTTTCCTCCCTCTTTTTGGACAGCAAATCTGTAGAAATTATGT  600

seq1  CTGGTTCTTTTTTACAGCCCCATACTCCGATAAATAAGACTCCAACTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCTTTTTTACAGCCCCATACTCCGATAAATAAGACTCCAACTCAA  650

seq1  AATATATTTACAAATACATTGGCCATGCTGCTAGGCTCTTCTCTGACTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTTACAAATACATTGGCCATGCTGCTAGGCTCTTCTCTGACTTG  700

seq1  ATCATAATTTGAATTATCCCATTTATTCTAATCTACATTCTACCGTGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAATTTGAATTATCCCATTTATTCTAATCTACATTCTACCGTGAGG  750

seq1  ATGGTTAACTGTGCTCAGGTACCATGTGTCTGTACCATCGCATCTTCCTG  800
      ||||||||||||||||| ||||||||||||||||||| ||||||||||||
seq2  ATGGTTAACTGTGCTCACGTACCATGTGTCTGTACCAACGCATCTTCCTG  800

seq1  GGCAAATCTCCTGCACATGCCTGGCTCTATCCCAGAATTCTTTCTGCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATCTCCTGCACATGCCTGGCTCTATCCCAGAATTCTTTCTGCCTC  850

seq1  CTGGATGTCCCACCTTCTATTCTAACCTTTCCTATAGGCCACAGGTTTTT  900
      |||||||| |||||||||| ||||||||||| ||||||||||||||||||
seq2  CTGGATGT-CCACCTTCTA-TCTAACCTTTCTTATAGGCCACAGGTTTTT  898

seq1  TAATTGACAGGTGATACATCCGTACAGTGCATAAGATATTCTCTCTAGAA  950
      | ||||||||||||||||||| ||||| |||||  |||||| |||| |||
seq2  T-ATTGACAGGTGATACATCC-TACAGCGCATAGAATATTCGCTCT-GAA  945

seq1  AATCCATTACAGAGCCCTAATGATTTTATTTGTCATCTACTTAACTTTAC  1000
      ||| |||||| || |||| |||||||   |||||||||||| ||||||||
seq2  AAT-CATTACTGACCCCTTATGATTT--ATTGTCATCTACTGAACTTTAC  992

seq1  CCAAGTCTTTCCCACTCTTTTAAAGGTTGTTTTTTAGAAACATCTTATTT  1050
      |  ||||||| ||||||  |  | |||||| || ||  |||| |||||||
seq2  CTCAGTCTTT-CCACTC-GTGGATGGTTGTCTTGTAAGAACAACTTATTT  1040

seq1  TATGTGCATGAGGTTTT  1067
         ||||||||||||||
seq2  CTAGTGCATGAGGTTTT  1057

seq1: chr8_81872706_81873530
seq2: B6Ng01-033L14.g_66_888 (reverse)

seq1  TACTTTGTATCTTTGCTTCTTTGCCCTTTCGGTACACAGGGTAGAAAAAC  50
      |||||||||| |||| | |||| |||||||||||||||||||| ||||||
seq2  TACTTTGTATATTTGATCCTTTTCCCTTTCGGTACACAGGGTA-AAAAAC  49

seq1  TACCTGCATGTTCAGAGGGTCACATATAGACAGGCTCACATATAGACATG  100
      |||||  |||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAAATGTTCAGAGGGTCACATATAGACAGGCTCACATATAGACATG  99

seq1  CACAACAGCATATAAACACACACCATGTCATTAATTTATGATTTTATACC  150
      | |||| |||||||||||||||||||||||||||||||||| ||| ||||
seq2  CTCAACTGCATATAAACACACACCATGTCATTAATTTATGA-TTTCTACC  148

seq1  GACACTTCCAAGGGATGCCACACTCCTTCATGACTGCATGCTCCTTACTT  200
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTACCAAGGGATGCCACACTCCTTCATGACTGCATGCTCCTTACTT  198

seq1  CGCAGGCAAAGCTGAGCTGAGCACCTACCTACACGTTTAGCCATTTGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGGCAAAGCTGAGCTGAGCACCTACCTACACGTTTAGCCATTTGCTT  248

seq1  AATCATATAGTAAATGCATGTAAACGTTACAGAACTGTTCTAATTTACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATATAGTAAATGCATGTAAACGTTACAGAACTGTTCTAATTTACCA  298

seq1  CTAATAAATAATTAAGTCTATTAAGAAAGACAGGTGGGATGGCGACGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAAATAATTAAGTCTATTAAGAAAGACAGGTGGGATGGCGACGTGG  348

seq1  CTCAATGGGGAGAGTGCTTGCCACCAAGCTGATGACTTGAGTTTGATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATGGGGAGAGTGCTTGCCACCAAGCTGATGACTTGAGTTTGATTTC  398

seq1  TGATGGCCACAGGATGGAAGGAGAGAACCGACTCCCTGACTGTCCTCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCCACAGGATGGAAGGAGAGAACCGACTCCCTGACTGTCCTCTGA  448

seq1  TCAAGACCCTCGAGCACACACGTACACATGCACACAGGCGCATGCACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACCCTCGAGCACACACGTACACATGCACACAGGCGCATGCACACA  498

seq1  TAGGCAATAAATGTAAAAATTCTTAATAAGATATTTTTATAACAAAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAATAAATGTAAAAATTCTTAATAAGATATTTTTATAACAAAAACA  548

seq1  TCAGAGTACTGCCCACAGTAGCAAGCCACACTATGCACTAATTCCTAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTACTGCCCACAGTAGCAAGCCACACTATGCACTAATTCCTAACA  598

seq1  ACATTATCAGAGTTGAAAAAACCACTAAGATCATCAATTAGCACAGTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATCAGAGTTGAAAAAACCACTAAGATCATCAATTAGCACAGTCTT  648

seq1  CAATAATATGAATTGGAAAATGTCTTCAAATAGCAGTGTCTGAACATTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATATGAATTGGAAAATGTCTTCAAATAGCAGTGTCTGAACATTCA  698

seq1  CTGGCATTTGCCACAGGAATGACTGAGTCACTTCTAGAGGAATAAGAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATTTGCCACAGGAATGACTGAGTCACTTCTAGAGGAATAAGAGAC  748

seq1  GAACGTTTGCAAGCAGAGAAAAGGGAAAGCTCACCTTTCCCAATATGTCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGTTTGCAAGCAGAGAAAAGGGAAAGCTCACCTTTCCCAATATGTCG  798

seq1  CCTGGTGTTTTCAATAGTGGAATTC  825
      |||||||||||||||||||||||||
seq2  CCTGGTGTTTTCAATAGTGGAATTC  823