BAC Information

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BAC

Clone NameB6Ng01-034J02
Chromosome8 (Build37)
Map Location 23,309,055 - 23,309,735
singlet/doubletsinglet
Overlap geneVps36
Upstream geneDefcr-rs7, LOC100041759, LOC672740, EG665969, LOC100041787, Defcr3, Defcr5, LOC100041811, Defcr-rs1, LOC100040668, LOC100041843, LOC100040678, EG665927, LOC100040693, Defcr20, LOC100041890, LOC100041895, EG626682, LOC100040706, EG665956, LOC635093, Defcr26, Defcr17, LOC100041952, Defcr-ps1, AY761184, LOC100040729, Defcr24, LOC100040739, Defb1, Defb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70, Atp7b, Alg11, Nek5, Nek3, Ckap2
Downstream geneRpl30-ps2, Thsd1, Tpte, Slc25a15, LOC547006, Mrps31, AI316807, Slc20a2, LOC100040803, Vdac3, Dkk4, Polb, Ikbkb, Plat, Ap3m2, Myst3, LOC100042253, Ank1, Nkx6-3, Agpat6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034J02.b
ACCDH863282
length679
definitionDH863282|Mus musculus domesticus DNA, BAC clone: B6Ng01-034J02, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtatcactgcccccagcaggcagaggcagacagatcaactggt
ctatatatatatatatatagcaagttcaaggtcagactaggctagagagt
aagaccgtgtctcaaaacaaaatgaagacaaacgagagaaaacaaatgga
aactcttgactgggggtagcttaggttgttattcggtgatgaaacaagca
ctcggctgggtcaaggcgctaggtgcccattcgctcgaactcccaataca
cagatgactagacaaagcccagagcagatgctgaacgtgtctcttacatt
attcttctggtctctccaaatcagccggtgtgtactaagaagaagagtcc
cggcatcaaattttatctaaaacgataagattgttacaagaatatcagga
tcactccacattacccagatttccttactcgctaagcatacaatatgaaa
ttactaaacattttagaatgaggattatcacaaattaaaaagcaaagcta
tatgcttcataaatataagctatacatcataatatataattccataatat
atatatatatatatatatatatatatatatatatatatacacatacatat
atagtcattatagaattatgggaaaattctttgaaaaaatccataatcta
gatatatattcgggagtactaaaataaaa
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_23309055_23309735
seq2: B6Ng01-034J02.b_45_723 (reverse)

seq1  TTTTATTTAAGTACTCCTGATTATATATCTAGATTATGGA-TTTTTCATA  49
      |||||||| |||||||| || ||||||||||||||||||| ||||||| |
seq2  TTTTATTTTAGTACTCCCGAATATATATCTAGATTATGGATTTTTTCAAA  50

seq1  GAATTTT-CCATAATTCTATAATGACTATATATGTATGTGTATATATATA  98
      ||||||| ||||||||||||||||||||||||||||||||    ||||||
seq2  GAATTTTCCCATAATTCTATAATGACTATATATGTATGTG----TATATA  96

seq1  TATATATATATATATATATATATATATATATATATATTATGGAATTATAT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATATATATTATGGAATTATAT  146

seq1  ATTATGATGTATAGCTTATATTTATGAAGCATATAGCTTTGCTTTTTAAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGATGTATAGCTTATATTTATGAAGCATATAGCTTTGCTTTTTAAT  196

seq1  TTGTGATAATCCTCATTCTAAAATGTTTAGTAATTTCATATTGTATGCTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATAATCCTCATTCTAAAATGTTTAGTAATTTCATATTGTATGCTT  246

seq1  AGCGAGTAAGGAAATCTGGGTAATGTGGAGTGATCCTGATATTCTTGTAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAGTAAGGAAATCTGGGTAATGTGGAGTGATCCTGATATTCTTGTAA  296

seq1  CAATCTTATCGTTTTAGATAAAATTTGATGCCGGGACTCTTCTTCTTAGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTATCGTTTTAGATAAAATTTGATGCCGGGACTCTTCTTCTTAGT  346

seq1  ACACACCGGCTGATTTGGAGAGACCAGAAGAATAATGTAAGAGACACGTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCGGCTGATTTGGAGAGACCAGAAGAATAATGTAAGAGACACGTT  396

seq1  CAGCATCTGCTCTGGGCTTTGTCTAGTCATCTGTGTATTGGGAGTTCGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCTGCTCTGGGCTTTGTCTAGTCATCTGTGTATTGGGAGTTCGAG  446

seq1  CGAATGGGCACCTAGCGCCTTGACCCAGCCGAGTGCTTGTTTCATCACCG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATGGGCACCTAGCGCCTTGACCCAGCCGAGTGCTTGTTTCATCACCG  496

seq1  AATAACAACCTAAGCTACCCCCAGTCAAGAGTTTCCATTTGTTTTCTCTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAACCTAAGCTACCCCCAGTCAAGAGTTTCCATTTGTTTTCTCTC  546

seq1  GTTTGTCTTCATTTTGTTTTGAGACACGGTCTTACTCTCTAGCCTAGTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCTTCATTTTGTTTTGAGACACGGTCTTACTCTCTAGCCTAGTCT  596

seq1  GACCTTGAACTTGCTATATATATATATATATAGACCAGTTGATCTGTCTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGAACTTGCTATATATATATATATATAGACCAGTTGATCTGTCTG  646

seq1  CCTCTGCCTGCTGGGGGCAGTGATACTGAATTC  681
      |||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTGCTGGGGGCAGTGATACTGAATTC  679