BAC Information

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BAC

Clone NameB6Ng01-034J20
Chromosome8 (Build37)
Map Location 119,519,468 - 119,648,508
singlet/doubletdoublet
Overlap genePkd1l2, Bcmo1
Upstream geneLOC384868, LOC668233, Dynlrb2, Cdyl2, LOC100043053, 2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh
Downstream geneGan, 4933407C03Rik, Plcg2, 4632417N05Rik, Hsd17b2, Mphosph6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034J20.bB6Ng01-034J20.g
ACCDH863314DH863315
length999860
definitionDH863314|Mus musculus domesticus DNA, BAC clone: B6Ng01-034J20, 5' end.DH863315|Mus musculus domesticus DNA, BAC clone: B6Ng01-034J20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,647,474 - 119,648,508)(119,519,468 - 119,520,324)
sequence
gaattcatgacgtaataagcttttccccactctcagtggtcaagggacaa
agaacgtgcctgctttgcagtttggctggagagcccaatggaacaaagtc
tgtgaactaagtagccccgtgctgggtgcactgtagtatctcaccttgta
cccatgtgccttgctgggtaccgccccctccccacccaaggcatgtccag
ccttgatccgcagggagttggtcgacaagacactcttttagctccagcct
gaaactggtcagactggttaagggataaacttttaattttccacacacag
cagtaacctaacatgactcggctgcttttagcagccaaaccctgctcagc
attgaaaagaaaccggccagaattcaaacaaaaaaatgaaaataaaaata
aaatcccacagtcttgctctgcagtcctggtgcccgagggaacttccagg
ggtaagcagagagcttgggtagctgcccatctgctgccaaggaaatacca
gcttctgcttggaaccagaattcagaacttgctatgtgagtttgaaaaga
tctttgaccccactgggttggcctccctgtctgtaaatggggtaatgggt
gaagcatagtggagtctgcccgatcttggaaagttatgggtatataagca
tctggggccgggtcagaggtatcattgtgaacagacacggattcaaatcc
tgccctaatcccaatggtgactctttgatgttgggcaagctactttccct
cttaactggaaactctgggataaagaatactcagagggtgcaatgtgaac
cggcaaaacagtaacattcttaaactcttgcaggctgagcaatagctcga
gtgaggctcacgggccttatgcccaatgcagcagctaatagtacacgatc
gctctcctaccagatccaggctttatcattggaactgctctagcaaacta
gaactagcaacttttatgatgacgctcttcttttcttttcgaaagaaga
gaattcctctatagacagcaaagccagtactccagtgggacgccagagtg
accagcaagtgcggggccagaagctctggccttccccatcccccacctgt
ggataaacagtttaaacccgggacaaagcttgtgctggctgaggagccag
agcctgggggggcaactctggctgctcactgctgctccaagtctcctccc
ttttacatctgatgcccagaaagctgaggattttcaccaggagcaagtcc
gcaatctctccttcctcccacagctgcaagaagaaaggactaggtgatat
atccggaaccatcctaagatattgtttggtccaggagatgaggctagggc
ttggcgatagagcacacctctaggatgctccaggctctgggttttgtcct
cagcaccacaaagcaaacaaaaatagcctccccccacccccccacccccc
gcctgcctaaagtcactaggcttgggatgtccttctactggggctctagc
tccactggggaagggcaggcctatgctttcctgctatctgcagtgggccc
tcttcctctgctgagcatgtctgagctgtcctggactttgatatcccaaa
ctggacaaagaaagcctcagctggttactgcatctgaatttaagcaccag
acatctttcagaggtgactgtcacccacctcactcaaccttgctatgttc
tcttcccctgtcactattacccttctgcttgccccactcatccctcagtc
cagcccagcatggggagggactgggattcctggggaataagaaacttaaa
caggtgtttctcagtatgcctttcacatacttaaccataattgattgatt
tgatagatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_119647474_119648508
seq2: B6Ng01-034J20.b_49_1047 (reverse)

seq1  TCTTCTTTCCAGAAAAGAAAAAAGAGGAGCTGCTATCATTAAAATAGGTT  50
      |||||||||  ||||||  |||||| |||| |  ||||| |||    |||
seq2  TCTTCTTTC--GAAAAG--AAAAGAAGAGC-GTCATCATAAAA----GTT  41

seq1  GGCTTTAGTTCTAGTGTTTGGCTAGAGCAGTTCCAGATGATAAAAGCCCT  100
      |    |||||||||   || ||||||||||||||| ||||| ||||||  
seq2  G---CTAGTTCTAG---TTTGCTAGAGCAGTTCCA-ATGAT-AAAGCC--  81

seq1  TGTATCTGGGTAGGAGAGCGATTTGGTGTACTTAATTAGCCTGCTGCATT  150
      || |||| |||||||||||||  | |||||||  ||||| |||||||| |
seq2  TGGATCT-GGTAGGAGAGCGA--TCGTGTACT--ATTAG-CTGCTGCA-T  124

seq1  TGGGCATAGGGCCCGTGGGCCTCAACTCGGGCTATTTGCTCCAGGCCCTG  200
      |||||||| |||||||| ||||| ||||| |||| ||||| |||  ||||
seq2  TGGGCATAAGGCCCGTGAGCCTC-ACTCGAGCTA-TTGCT-CAG--CCTG  169

seq1  C-AGAGTTTTAAGAACTGTTAACTGTTTTTGCCGGTTCACATTGCAACCC  249
      | |||| |||||||| |||| |||| ||||||||||||||||||| ||||
seq2  CAAGAG-TTTAAGAA-TGTT-ACTG-TTTTGCCGGTTCACATTGC-ACCC  214

seq1  TCTGAGTTATTCTTTATCCCAGAGTTTCCAGTTAAGAGGGAAAGTAGCTT  299
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAG-TATTCTTTATCCCAGAGTTTCCAGTTAAGAGGGAAAGTAGCTT  263

seq1  GCCCAACATCAAAGAGTCACCATTGGGATTAGGGCAGGATTTGAATCCGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAACATCAAAGAGTCACCATTGGGATTAGGGCAGGATTTGAATCCGT  313

seq1  GTCTGTTCACAATGATACCTCTGACCCGGCCCCAGATGCTTATATAACCA  399
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTCTGTTCACAATGATACCTCTGACCCGGCCCCAGATGCTTATATACCCA  363

seq1  TAACTTTCCAAGATCGGGCAGACTCCACTATGCTTCACCCATTACCCCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTCCAAGATCGGGCAGACTCCACTATGCTTCACCCATTACCCCAT  413

seq1  TTACAGACAGGGAGGCCAACCCAGTGGGGTCAAAGATCTTTTCAAACTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGACAGGGAGGCCAACCCAGTGGGGTCAAAGATCTTTTCAAACTCA  463

seq1  CATAGCAAGTTCTGAATTCTGGTTCCAAGCAGAAGCTGGTATTTCCTTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCAAGTTCTGAATTCTGGTTCCAAGCAGAAGCTGGTATTTCCTTGG  513

seq1  CAGCAGATGGGCAGCTACCCAAGCTCTCTGCTTACCCCTGGAAGTTCCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGATGGGCAGCTACCCAAGCTCTCTGCTTACCCCTGGAAGTTCCCT  563

seq1  CGGGCACCAGGACTGCAGAGCAAGACTGTGGGATTTTATTTTTATTTTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCACCAGGACTGCAGAGCAAGACTGTGGGATTTTATTTTTATTTTCA  613

seq1  TTTTTTTGTTTGAATTCTGGCCGGTTTCTTTTCAATGCTGAGCAGGGTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGTTTGAATTCTGGCCGGTTTCTTTTCAATGCTGAGCAGGGTTT  663

seq1  GGCTGCTAAAAGCAGCCGAGTCATGTTAGGTTACTGCTGTGTGTGGAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTAAAAGCAGCCGAGTCATGTTAGGTTACTGCTGTGTGTGGAAAA  713

seq1  TTAAAAGTTTATCCCTTAACCAGTCTGACCAGTTTCAGGCTGGAGCTAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTTTATCCCTTAACCAGTCTGACCAGTTTCAGGCTGGAGCTAAA  763

seq1  AGAGTGTCTTGTCGACCAACTCCCTGCGGATCAAGGCTGGACATGCCTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTCTTGTCGACCAACTCCCTGCGGATCAAGGCTGGACATGCCTTG  813

seq1  GGTGGGGAGGGGGCGGTACCCAGCAAGGCACATGGGTACAAGGTGAGATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGAGGGGGCGGTACCCAGCAAGGCACATGGGTACAAGGTGAGATA  863

seq1  CTACAGTGCACCCAGCACGGGGCTACTTAGTTCACAGACTTTGTTCCATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTGCACCCAGCACGGGGCTACTTAGTTCACAGACTTTGTTCCATT  913

seq1  GGGCTCTCCAGCCAAACTGCAAAGCAGGCACGTTCTTTGTCCCTTGACCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTCCAGCCAAACTGCAAAGCAGGCACGTTCTTTGTCCCTTGACCA  963

seq1  CTGAGAGTGGGGAAAAGCTTATTACGTCATGAATTC  1035
      ||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGTGGGGAAAAGCTTATTACGTCATGAATTC  999

seq1: chr8_119519468_119520324
seq2: B6Ng01-034J20.g_72_931

seq1  GAATTCCTCTATAGACAGCAAAGCCAGTACTCCAGTGGGACGCCAGAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTATAGACAGCAAAGCCAGTACTCCAGTGGGACGCCAGAGTG  50

seq1  ACCAGCAAGTGCGGGGCCAGAAGCTCTGGCCTTCCCCATCCCCCACCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCAAGTGCGGGGCCAGAAGCTCTGGCCTTCCCCATCCCCCACCTGT  100

seq1  GGATAAACAGTTTAAACCCGGGACAAAGCTTGTGCTGGCTGAGGAGCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAACAGTTTAAACCCGGGACAAAGCTTGTGCTGGCTGAGGAGCCAG  150

seq1  AGCCTGGGGGGGCAACTCTGGCTGCTCACTGCTGCTCCAAGTCTCCTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGGGGGGCAACTCTGGCTGCTCACTGCTGCTCCAAGTCTCCTCCC  200

seq1  TTTTACATCTGATGCCCAGAAAGCTGAGGATTTTCACCAGGAGCAAGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACATCTGATGCCCAGAAAGCTGAGGATTTTCACCAGGAGCAAGTCC  250

seq1  GCAATCTCTCCTTCCTCCCACAGCTGCAAGAAGAAAGGACTAGGTGATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTCTCCTTCCTCCCACAGCTGCAAGAAGAAAGGACTAGGTGATAT  300

seq1  ATCCGGAACCATCCTAAGATATTGTTTGGTCCAGGAGATGAGGCTAGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGGAACCATCCTAAGATATTGTTTGGTCCAGGAGATGAGGCTAGGGC  350

seq1  TTGGCGATAGAGCACACCTCTAGGATGCTCCAGGCTCTGGGTTTTGTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCGATAGAGCACACCTCTAGGATGCTCCAGGCTCTGGGTTTTGTCCT  400

seq1  CAGCACCACAAAGCAAACAAAAATAGCCTCCCCCCACCCCCCCACCCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCACAAAGCAAACAAAAATAGCCTCCCCCCACCCCCCCACCCCCC  450

seq1  GCCTGCCTAAAGTCACTAGGCTTGGGATGTCCTTCTACTGGGGCTCTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCTAAAGTCACTAGGCTTGGGATGTCCTTCTACTGGGGCTCTAGC  500

seq1  TCCACTGGGGAAGGGCAGGCCTATGC-TTCCTGCTATCTGCAGTGGGCCC  549
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCCACTGGGGAAGGGCAGGCCTATGCTTTCCTGCTATCTGCAGTGGGCCC  550

seq1  TCTTCCTCTGCTGAGCATGTCTGAGCTGTCCTGGAC-TTGATATCCCAAA  598
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCTTCCTCTGCTGAGCATGTCTGAGCTGTCCTGGACTTTGATATCCCAAA  600

seq1  CTGGACAAAGAAAGCCTCAGCTGGTTACTGCATCTGAACTTAAGCACCAG  648
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTGGACAAAGAAAGCCTCAGCTGGTTACTGCATCTGAATTTAAGCACCAG  650

seq1  ACATCTTTCAGAGGTGACTGTCACCCACCTCACTCAACCTTGCTATGTTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTTCAGAGGTGACTGTCACCCACCTCACTCAACCTTGCTATGTTC  700

seq1  TCTTCCCCTGTCACTATTACCCTTCTGCTTGCCCCACTCATCCCTCAGTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCCTGTCACTATTACCCTTCTGCTTGCCCCACTCATCCCTCAGTC  750

seq1  CAGCCCAGCAT-GGGAGGGACTGGGATTCCTGGGGAATAAGAAAC-TAAA  796
      ||||||||||| ||||||||||||||||||||||||||||||||| ||||
seq2  CAGCCCAGCATGGGGAGGGACTGGGATTCCTGGGGAATAAGAAACTTAAA  800

seq1  CAGGTGTTTCTCAGTATGCCTTTCACATACTTAACCATAAATGATTGATT  846
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAGGTGTTTCTCAGTATGCCTTTCACATACTTAACCATAATTGATTGATT  850

seq1  TAGATAGATAG  857
      | |||||||||
seq2  T-GATAGATAG  860