BAC Information

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BAC

Clone NameB6Ng01-035H21
Chromosome8 (Build37)
Map Location 23,268,233 - 23,374,208
singlet/doubletdoublet
Overlap geneNek3, Ckap2, Vps36, Rpl30-ps2, Thsd1
Upstream geneLOC100038927, Defcr22, Defcr-rs7, LOC100041759, LOC672740, EG665969, LOC100041787, Defcr3, Defcr5, LOC100041811, Defcr-rs1, LOC100040668, LOC100041843, LOC100040678, EG665927, LOC100040693, Defcr20, LOC100041890, LOC100041895, EG626682, LOC100040706, EG665956, LOC635093, Defcr26, Defcr17, LOC100041952, Defcr-ps1, AY761184, LOC100040729, Defcr24, LOC100040739, Defb1, Defb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70, Atp7b, Alg11, Nek5
Downstream geneTpte, Slc25a15, LOC547006, Mrps31, AI316807, Slc20a2, LOC100040803, Vdac3, Dkk4, Polb, Ikbkb, Plat, Ap3m2, Myst3, LOC100042253, Ank1, Nkx6-3, Agpat6, Gins4, Golga7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035H21.bB6Ng01-035H21.g
ACCDH863941DH863942
length924735
definitionDH863941|Mus musculus domesticus DNA, BAC clone: B6Ng01-035H21, 5' end.DH863942|Mus musculus domesticus DNA, BAC clone: B6Ng01-035H21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,268,233 - 23,269,169)(23,373,621 - 23,374,208)
sequence
gaattctagggcagtcagggctgcataatgagaccctgtcttactgcaaa
taaacaaaaagtctattgtacatcatggagatgatggttaatataatatt
cttgagaaattactaaaaaagtagattttatttgtttatgtgctagggat
tagcctcaggtagtctgagttggcctcaaactagaaatcctcctgccttg
gcctcccaatggctaagaccacaggcagataactaccatgtccagtcaaa
gagtaaatgttccaatggttaaaaagtacttaaggcttcctaaaagaagg
gaaggggctagagacttggctcagtggttaagaggacttgttcttcagag
ggcctgagtttggtttctagtttggtttcaggtggctcacaaccatctga
aattccagctctaggggatgcaaaacccaggccctcttgggcatctgcac
tctctcaagatgaatgtatacacgtacacacacacacacacacacacaca
cacacactaaaaataagtactctatgaatacaaataagcacttgaatgtt
catgggggagttgtttgtttgtttgtttgtttttgtcctggaaactcctc
tgtcgaccaggctggcctcagacttagagatctgcctgcctctgtgtcct
gagtgctagaattaaaggtgtggccaccatgcctggctacattttttttt
ttttctttgtttagttaaaggagtaaatataaaaagtgatagattggcaa
cattttcctaaactaaactaaacagaatgcctgaaaggagatcatatcag
aaaagcagacatgaatattttcttttttttcttatacctcacatgtctat
actcactttcgacttgatatctctgtgtaaacccgtctcttatgaatgtg
atttactccagacaatttgtataa
gaattctctggcttctgtgggtagaatggattagatgagtacaagacaga
cattttaggaatttaataaaaaggattgtgctgggtgaaaaaagcatatg
gctagataggccctagaggaggacctactacaattattctgcagagtgga
cacagtattaattcctgatgccctaagattatacccacagatcaaggcac
ctctcaactctcatgaaagaagcttttgtttgcagtaaacaataaccaac
acagagacagacccacaacttaccaaggtactgaaaagaaaaagacttcg
gaatgttctggactaaagtgaataaattctctcacagccctccttccaaa
agatcattgcagaaggagggctgaaaaaaacaaaacaaaactgtaagact
cacaggcagcagctgtctccaaggaaactgtcttctagacacagcacggt
agctatacatgtgcactcaaagtagtggcgacagaatacacaaaaagcca
gaccaaactccagcatgaagaagagagttggatatgaggtttcaccccta
gctgaagagctattgttagcaatttctagcttcccagaaggaatggtcag
ttttctctaaatgctgaacccatgacggggccatcacatggcagtggaag
tccatacactaaagtatatttgggcaacttgcttgatgggggaaagacac
aagactggatgggaagggaaagggaatggctctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_23268233_23269169
seq2: B6Ng01-035H21.b_47_970

seq1  GAATTCTAGGGCAGTCAGGGCTGCATAATGAGACCCTGTCTTACTGCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGGCAGTCAGGGCTGCATAATGAGACCCTGTCTTACTGCAAA  50

seq1  TAAACAAAAAGTCTATTGTACATCATGGAGATGATGGTTAATATAATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAAAAGTCTATTGTACATCATGGAGATGATGGTTAATATAATATT  100

seq1  CTTGAGAAATTACTAAAAAAGTAGATTTTATTTGTTTATGTGCTAGGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAAATTACTAAAAAAGTAGATTTTATTTGTTTATGTGCTAGGGAT  150

seq1  TAGCCTCAGGTAGTCTGAGTTGGCCTCAAACTAGAAATCCTCCTGCCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCAGGTAGTCTGAGTTGGCCTCAAACTAGAAATCCTCCTGCCTTG  200

seq1  GCCTCCCAATGGCTAAGACCACAGGCAGATAACTACCATGTCCAGTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCAATGGCTAAGACCACAGGCAGATAACTACCATGTCCAGTCAAA  250

seq1  GAGTAAATGTTCCAATGGTTAAAAAGTACTTAAGGCTTCCTAAAAGAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAATGTTCCAATGGTTAAAAAGTACTTAAGGCTTCCTAAAAGAAGG  300

seq1  GAAGGGGCTAGAGACTTGGCTCAGTGGTTAAGAGGACTTGTTCTTCAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGCTAGAGACTTGGCTCAGTGGTTAAGAGGACTTGTTCTTCAGAG  350

seq1  GGCCTGAGTTTGGTTTCTAGTTTGGTTTCAGGTGGCTCACAACCATCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGAGTTTGGTTTCTAGTTTGGTTTCAGGTGGCTCACAACCATCTGA  400

seq1  AATTCCAGCTCTAGGGGATGCAAAACCCAGGCCCTCTTGGGCATCTGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGCTCTAGGGGATGCAAAACCCAGGCCCTCTTGGGCATCTGCAC  450

seq1  TCTCTCAAGATGAATGTATACACGTACACACACACACACACACACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAAGATGAATGTATACACGTACACACACACACACACACACACACA  500

seq1  CACACACTAAAAATAAGTACTCTATGAATACAAATAAGCACTTGAATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTAAAAATAAGTACTCTATGAATACAAATAAGCACTTGAATGTT  550

seq1  CATGGGGGAGTTGTTTGTTTGTTTGTTTGTTTTTGTCCTGG-AACTCCTC  599
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CATGGGGGAGTTGTTTGTTTGTTTGTTTGTTTTTGTCCTGGAAACTCCTC  600

seq1  TGTCGACCAGGCTGGCCTCAGACTTAGAGATCTGCCTGCCTCTGTGTCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGACCAGGCTGGCCTCAGACTTAGAGATCTGCCTGCCTCTGTGTCCT  650

seq1  GAGTGCTAGAATTAAAGGTGTGGCCACCATGCCTGGCTACATTTTTTTTT  699
      |||||||||||||||||||||||||||||||||||||||||     ||||
seq2  GAGTGCTAGAATTAAAGGTGTGGCCACCATGCCTGGCTACA-----TTTT  695

seq1  TTTTTTTTTTTTTTTTTAGTTAAAAGAGTAAATATAAAAAGTGATAGATT  749
      ||||||||| ||| |||||||||| |||||||||||||||||||||||||
seq2  TTTTTTTTTCTTTGTTTAGTTAAAGGAGTAAATATAAAAAGTGATAGATT  745

seq1  GGCAAACATTTCCTAAACTAAACTAAACAGAATGCCTGAAAGGAGATCAT  799
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACATTTTCCTAAACTAAACTAAACAGAATGCCTGAAAGGAGATCAT  795

seq1  AACCAGAAAAGCAGACAATGAAATAATTTTCTTTTTTTTCCTATACCTCA  849
       | ||||||||||||| |||||   ||||||||||||||| |||||||| 
seq2  -ATCAGAAAAGCAGAC-ATGAA--TATTTTCTTTTTTTTCTTATACCTC-  840

seq1  ACATGTCTTATACTCACTTTCGACTTGATATCTCTGTGTAAAACACGTCT  899
      ||||||| ||||||||||||||||||||||||||||||| |||| |||||
seq2  ACATGTC-TATACTCACTTTCGACTTGATATCTCTGTGT-AAACCCGTCT  888

seq1  CTTATGAATGTGATTTACTCCAAGACAAATTTGTATAA  937
      ||||||||||||||||||||| |||| |||||||||||
seq2  CTTATGAATGTGATTTACTCC-AGAC-AATTTGTATAA  924

seq1: chr8_23373621_23374208
seq2: B6Ng01-035H21.g_64_651 (reverse)

seq1  TCTGGGAAGCTAGAAATTGCTAACAATAGCTCTTCAGCTAGGGGTGAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAAGCTAGAAATTGCTAACAATAGCTCTTCAGCTAGGGGTGAAAC  50

seq1  CTCATATCCAACTCTCTTCTTCATGCTGGAGTTTGGTCTGGCTTTTTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATCCAACTCTCTTCTTCATGCTGGAGTTTGGTCTGGCTTTTTGTG  100

seq1  TATTCTGTCGCCACTACTTTGAGTGCACATGTATAGCTACCGTGCTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGTCGCCACTACTTTGAGTGCACATGTATAGCTACCGTGCTGTGT  150

seq1  CTAGAAGACAGTTTCCTTGGAGACAGCTGCTGCCTGTGAGTCTTACAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGACAGTTTCCTTGGAGACAGCTGCTGCCTGTGAGTCTTACAGTT  200

seq1  TTGTTTTGTTTTTTTCAGCCCTCCTTCTGCAATGATCTTTTGGAAGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTTTTCAGCCCTCCTTCTGCAATGATCTTTTGGAAGGAGG  250

seq1  GCTGTGAGAGAATTTATTCACTTTAGTCCAGAACATTCCGAAGTCTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGAGAGAATTTATTCACTTTAGTCCAGAACATTCCGAAGTCTTTTT  300

seq1  CTTTTCAGTACCTTGGTAAGTTGTGGGTCTGTCTCTGTGTTGGTTATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAGTACCTTGGTAAGTTGTGGGTCTGTCTCTGTGTTGGTTATTGT  350

seq1  TTACTGCAAACAAAAGCTTCTTTCATGAGAGTTGAGAGGTGCCTTGATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCAAACAAAAGCTTCTTTCATGAGAGTTGAGAGGTGCCTTGATCT  400

seq1  GTGGGTATAATCTTAGGGCATCAGGAATTAATACTGTGTCCACTCTGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTATAATCTTAGGGCATCAGGAATTAATACTGTGTCCACTCTGCAG  450

seq1  AATAATTGTAGTAGGTCCTCCTCTAGGGCCTATCTAGCCATATGCTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTGTAGTAGGTCCTCCTCTAGGGCCTATCTAGCCATATGCTTTTT  500

seq1  TCACCCAGCACAATCCTTTTTATTAAATTCCTAAAATGTCTGTCTTGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCAGCACAATCCTTTTTATTAAATTCCTAAAATGTCTGTCTTGTAC  550

seq1  TCATCTAATCCATTCTACCCACAGAAGCCAGAGAATTC  588
      ||||||||||||||||||||||||||||||||||||||
seq2  TCATCTAATCCATTCTACCCACAGAAGCCAGAGAATTC  588