BAC Information

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BAC

Clone NameB6Ng01-036A04
Chromosome8 (Build37)
Map Location 113,744,459 - 113,894,927
singlet/doubletdoublet
Overlap geneGlg1, Rfwd3, LOC547023, Mlkl, Fa2h
Upstream geneBC025546, Hydin, LOC672398, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik
Downstream geneWdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036A04.bB6Ng01-036A04.g
ACCDH864323DH864324
length1,010771
definitionDH864323|Mus musculus domesticus DNA, BAC clone: B6Ng01-036A04, 5' end.DH864324|Mus musculus domesticus DNA, BAC clone: B6Ng01-036A04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,744,459 - 113,745,489)(113,894,147 - 113,894,927)
sequence
gaattcagtgccctttttctggcctctgggcactgtatgcacacggtcta
cacatttaggcaaaagatccatttacatagaattaaataatttttaaata
ttttaagttaagccaggagtgatgatgcatgtctttaatcccagcgttca
agaggcacaggcaggtggatctctgagttatcagcaacactgttctacac
acccagttccaggatatcaagggatacacagagaaacttttgtctaaaaa
tcttttaaaaaacaaacaaacaaacaaaaacaaaacaaaaacactttctt
aaaaaataaaaatgcagggctgaagagacggctcagaggttaagagcact
gattgttcttctagaggtcctgtattcaattcccagcaaccacatggtgg
ctcacaaccatctgacacattcttctggtgtgtctgaagataaagctaca
gtatacttatatacataaaataaagaaataaatcttttaaaaaataaaaa
taaatttttaaaagaggagccaggcaatggtgggtgcacacctttaatcc
cagcactggggagtaaaggaggcggatctctgtgagttcgaggccagcct
ggtctacagagcaagttccaggacagccagggccagacagtagaatcctg
tcttgagaaaaattaaaattataatttaaaagaaaaagaaaaagaaaaag
aaaggctgagtggctgggcatggtggtgcacacctttaatcccagcactc
gggaggcagaggcaggcagatttctgagtttgaggccagcctggtctaca
gagtgagttccaggatagccaggactacacagagaaactcttgtctcaaa
aaccaaaaagaaaaaaaaaaagaaagaaagaaagaaagctgagtgttgtt
gcagcacacacttttgatccagcactcagagcagtgcagcgatctctaga
tcagatcagtcagctgtctactaatagagttctgagctaagatcgtatct
cgaaagtaaa
gaattcaagtcctgcctgaacttcatagcaagatcctgtctcagttacct
ttcccctaaataagaaagctgtcactagacataagtgggaaggggcatcc
gctgtcaagtcacactcgttagctcttgtgttaatccttcttgggaaagc
caatgtaagtgtgactacagaattactcaccgtcctccccaatgctaaaa
gtggtccgacctgaagacatcaaccagaacagtcttcttagctttgggat
tctccgttggtttataaagttcccttggcttccttccaggaagagagtct
taaatgcattgtggaagtttccaaaaaaaaaaaaagtttagagattttta
gagttagagctgtaccctatttccctggggtgacctttgcacacttctga
ttcatggatagtgcttgcttgtggaatgcaggggtgagcccaacctgaat
acaaaataaatactgcctggaaaacaggatccagacctatgtgtgtgttg
tgtgtgacagccgctgccggtgagtctcagttcctggaacacccaccctc
ccccaggagtggggccaggaaaacctcacttggagggtcttctatctaca
tataggaagggttttctagaccctctggggtctcacagctagtcttaaga
aaatcaatgataaaagacacattgggaggttggggggcgggggcatgtca
cccagaatgttctgctatagtgatgtccatgcgggctggtccgctctcct
tgaatcactttcatcggatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_113744459_113745489
seq2: B6Ng01-036A04.b_46_1055

seq1  GAATTCAGTGCCCTTTTTCTGGCCTCTGGGCACTGTATGCACACGGTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCCCTTTTTCTGGCCTCTGGGCACTGTATGCACACGGTCTA  50

seq1  CACATTTAGGCAAAAGATCCATTTACATAGAATTAAATAATTTTTAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTAGGCAAAAGATCCATTTACATAGAATTAAATAATTTTTAAATA  100

seq1  TTTTAAGTTAAGCCAGGAGTGATGATGCATGTCTTTAATCCCAGCGTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTTAAGCCAGGAGTGATGATGCATGTCTTTAATCCCAGCGTTCA  150

seq1  AGAGGCACAGGCAGGTGGATCTCTGAGTTATCAGCAACACTGTTCTACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCACAGGCAGGTGGATCTCTGAGTTATCAGCAACACTGTTCTACAC  200

seq1  ACCCAGTTCCAGGATATCAAGGGATACACAGAGAAACTTTTGTCTAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTTCCAGGATATCAAGGGATACACAGAGAAACTTTTGTCTAAAAA  250

seq1  TCTTTTAAAAAACAAACAAACAAACAAAAACAAAACAAAAACACTTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAAAAAACAAACAAACAAACAAAAACAAAACAAAAACACTTTCTT  300

seq1  AAAAAATAAAAATGCAGGGCTGAAGAGACGGCTCAGAGGTTAAGAGCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAAAAATGCAGGGCTGAAGAGACGGCTCAGAGGTTAAGAGCACT  350

seq1  GATTGTTCTTCTAGAGGTCCTGTATTCAATTCCCAGCAACCACATGGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTCTTCTAGAGGTCCTGTATTCAATTCCCAGCAACCACATGGTGG  400

seq1  CTCACAACCATCTGACACATTCTTCTGGTGTGTCTGAAGATAAAGCTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAACCATCTGACACATTCTTCTGGTGTGTCTGAAGATAAAGCTACA  450

seq1  GTATACTTATATACATAAAATAAAGAAATAAATCTTTTAAAAAATAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACTTATATACATAAAATAAAGAAATAAATCTTTTAAAAAATAAAAA  500

seq1  TAAATTTTTAAAAGAGGAGCCAGGCAATGGTGGGTGCACACCTTTAATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTTAAAAGAGGAGCCAGGCAATGGTGGGTGCACACCTTTAATCC  550

seq1  CAGCACTGGGGAGTAAAGGAGGCGGATCTCTGTGAGTTCGAGGCCAGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTGGGGAGTAAAGGAGGCGGATCTCTGTGAGTTCGAGGCCAGCCT  600

seq1  GGTCTACAGAGCAAGTTCCAGGACAGCCAGGGCCAGACAGTAGAATCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACAGAGCAAGTTCCAGGACAGCCAGGGCCAGACAGTAGAATCCTG  650

seq1  TCTTGAGAAAAATTAAAATTATAA-TTAAAAGAAAAAGAAAAAGAAAAAG  699
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCTTGAGAAAAATTAAAATTATAATTTAAAAGAAAAAGAAAAAGAAAAAG  700

seq1  AAAGGCTGAGTGGCTGGGCATGGTGGTGCACACCTTTAATCCCAGCACTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTGAGTGGCTGGGCATGGTGGTGCACACCTTTAATCCCAGCACTC  750

seq1  GGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTACA  800

seq1  GAGTGAGTTCCAGGATAGCCAGGACTACACAGAGAAAC-CCTGTCTCAAA  848
      |||||||||||||||||||||||||||||||||||||| | |||||| ||
seq2  GAGTGAGTTCCAGGATAGCCAGGACTACACAGAGAAACTCTTGTCTC-AA  849

seq1  AAACCAAAAAGAAAAAAAAAAAAGAAAGAAAGAAAGAAAGGCTGAGTGGT  898
      ||||||||||| ||||||||||||||||||||||||||| |||||||| |
seq2  AAACCAAAAAG-AAAAAAAAAAAGAAAGAAAGAAAGAAA-GCTGAGTGTT  897

seq1  GGTGGCAAGCACACACTTTTGATCCCAGCACTCAGGAGGCAGTGGCAGGC  948
      | ||   |||||||||||||||| |||||||||||   ||||| ||||  
seq2  GTTG--CAGCACACACTTTTGAT-CCAGCACTCAG--AGCAGT-GCAG--  939

seq1  GGATCTCCTAGATCAGATCAGGTCAGCCTGGTCTACAAATAGAGTTCCTG  998
       ||||| ||||||||||||| ||||||   |||||| ||||||||| |||
seq2  CGATCT-CTAGATCAGATCA-GTCAGC--TGTCTACTAATAGAGTT-CTG  984

seq1  AGCTACAGGGAAACCGTATCTCGAAAAAGTAAA  1031
      |||||     | | |||||||||  ||||||||
seq2  AGCTA-----AGATCGTATCTCG--AAAGTAAA  1010

seq1: chr8_113894147_113894927
seq2: B6Ng01-036A04.g_65_835 (reverse)

seq1  GCATCCGATGGAAAGTGACTTCAAGGAGAGCTGGAACCAGCCACACACTG  50
      ||||||||| |||||||| ||||||||||||  | ||||||| | ||  |
seq2  GCATCCGAT-GAAAGTGA-TTCAAGGAGAGC--GGACCAGCC-CGCATGG  45

seq1  ACATCACCTATAGCAGGAACATTCTGGGTTGGACATGCCCCCCGCCCCCC  100
      |||||| |||||||| |||||||||||||  |||||| ||||||||||||
seq2  ACATCA-CTATAGCA-GAACATTCTGGGT--GACATG-CCCCCGCCCCCC  90

seq1  AACCTCCCAATGTGTCTTTTATCATTGATTTTCTTAAGACTAGCTGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCCAATGTGTCTTTTATCATTGATTTTCTTAAGACTAGCTGTGAG  140

seq1  ACCCCAGAGGGTCTAGAAAACCCTTCCTATATGTAGATAGAAGACCCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGAGGGTCTAGAAAACCCTTCCTATATGTAGATAGAAGACCCTCC  190

seq1  AAGTGAGGTTTTCCTGGCCCCACTCCTGGGGGAGGGTGGGTGTTCCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGGTTTTCCTGGCCCCACTCCTGGGGGAGGGTGGGTGTTCCAGGA  240

seq1  ACTGAGACTCACCGGCAGCGGCTGTCACACACAACACACACATAGGTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGACTCACCGGCAGCGGCTGTCACACACAACACACACATAGGTCTG  290

seq1  GATCCTGTTTTCCAGGCAGTATTTATTTTGTATTCAGGTTGGGCTCACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGTTTTCCAGGCAGTATTTATTTTGTATTCAGGTTGGGCTCACCC  340

seq1  CTGCATTCCACAAGCAAGCACTATCCATGAATCAGAAGTGTGCAAAGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTCCACAAGCAAGCACTATCCATGAATCAGAAGTGTGCAAAGGTC  390

seq1  ACCCCAGGGAAATAGGGTACAGCTCTAACTCTAAAAATCTCTAAACTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGGGAAATAGGGTACAGCTCTAACTCTAAAAATCTCTAAACTTTT  440

seq1  TTTTTTTTTGGAAACTTCCACAATGCATTTAAGACTCTCTTCCTGGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTGGAAACTTCCACAATGCATTTAAGACTCTCTTCCTGGAAGG  490

seq1  AAGCCAAGGGAACTTTATAAACCAACGGAGAATCCCAAAGCTAAGAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAGGGAACTTTATAAACCAACGGAGAATCCCAAAGCTAAGAAGAC  540

seq1  TGTTCTGGTTGATGTCTTCAGGTCGGACCACTTTTAGCATTGGGGAGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGGTTGATGTCTTCAGGTCGGACCACTTTTAGCATTGGGGAGGAC  590

seq1  GGTGAGTAATTCTGTAGTCACACTTACATTGGCTTTCCCAAGAAGGATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTAATTCTGTAGTCACACTTACATTGGCTTTCCCAAGAAGGATTA  640

seq1  ACACAAGAGCTAACGAGTGTGACTTGACAGCGGATGCCCCTTCCCACTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGAGCTAACGAGTGTGACTTGACAGCGGATGCCCCTTCCCACTTA  690

seq1  TGTCTAGTGACAGCTTTCTTATTTAGGGGAAAGGTAACTGAGACAGGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGTGACAGCTTTCTTATTTAGGGGAAAGGTAACTGAGACAGGATC  740

seq1  TTGCTATGAAGTTCAGGCAGGACTTGAATTC  781
      |||||||||||||||||||||||||||||||
seq2  TTGCTATGAAGTTCAGGCAGGACTTGAATTC  771