BAC Information

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BAC

Clone NameB6Ng01-036D06
Chromosome8 (Build37)
Map Location 79,745,237 - 79,895,257
singlet/doubletdoublet
Overlap geneNr3c2, Arhgap10
Upstream geneLOC100039185, EG631594, LOC666226, LOC100039211, LOC384847
Downstream geneLOC100039235, AI931714, Tmem34, Ednra, EG622803, Ttc29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036D06.bB6Ng01-036D06.g
ACCDH864455DH864456
length840885
definitionDH864455|Mus musculus domesticus DNA, BAC clone: B6Ng01-036D06, 5' end.DH864456|Mus musculus domesticus DNA, BAC clone: B6Ng01-036D06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,894,416 - 79,895,257)(79,745,237 - 79,746,108)
sequence
gaattctgtattttctcactctatgcattgcattcattcatttattttgt
tccttggtgtgtatgtgtaagtcacaggacagcttgtgagttatgcctta
ccgccatgtgcgtaaggtctggtagctgaagtcaggttgttgggcttcct
ggccgtgtgcctttaaccactggaccatcctactggctgggagagacaca
ttttccatgagtcatttctattaaataaatgttgattcgcatcctagcat
gtgctgttattttataaatgtgggccatgaccagcatgtctttcatgtat
aataatatagctagctactttggaattaggtttaaaatttatagcacagt
taaaaactaaacaagtgcttgacttttctctttgttagtgtctgcttgtt
tgttatataatgtaaccgcatctccttccctgcatcggaagtcccacctc
tccttagttccgccccctcttagttctaatatccttttgtgttttcctga
tccttcctgtttgacatctgagggaaggaggagatgtacctgtcgggtcc
gcacgaagtcgactggttcctctgaaggggaagtgaggctgattatagga
aaagacataaagaaagctcaagagacagctatgggaggggttgcccgggt
cattaccatgccagccccaatgtttttatcataattttcttatgctacag
tccctggaaagcaaagccacagctaacagaaacatgctggtggaatgtac
ccaaacagttgtttccacccaaaaagccttctaggccaatagaatctcca
gccctcagcctcgagcttccgggcaccccttttattgttc
gaattctaggggaaccctgggaagtgcatgggaattccaggggaaccctg
ggaagtgcatgggaattccagaggaaccctgggaagtgcacgggaattcc
agaggaaccctgggaagtgcacgggaattccagaggaaccctgggaagtg
cacgggaattccaggggaaccctgggaagtgcacgggaattccagaggaa
ccctgggaagtgcacgggaattccaggggaaccctgggaagtgcacggga
attccaggggaaccctgggaagtgcatgggaattccagaggaaccctggg
aagtgcatgggaattccaggggaaccctgggaagtgcatgggaattccag
aggaaccctgggaagtgcatgggaattccagaggaaccctgggaagtgca
tgggaattccaggggaaccctgggaagtgcatgggaattccagaggaacc
ctgggaagtgcatgggaattccagaggaaccctgggaagtgcatgggaat
tccaggggaaccctgggaagtgcatgggaattctagaggaccttttctag
ccttcatgtttattaggcctgggaaatacccacagtgttttcatttgagt
aaatccttgaatcaaccattgtggtgttttcctcaaggaactaaatgctg
cacacatactggctctttcttccagcctagtctgtcacttagtggaaaaa
agacatttttcttgattcctcaacagtagattgatacaataatggaaatt
gtgcgtccaagctcacattgttgcttgctccaagacacatgtccacagct
ctcaaggaacacacagattcccaagcttccagaacccaacactgtccacg
gctccaggacacccacacacaatgtccacagctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_79894416_79895257
seq2: B6Ng01-036D06.b_43_882 (reverse)

seq1  GAACAATGAGAAGGGGTGCACGGGAGGCTCGAGGCTGAGGGCTGGAGATT  50
      ||||||| | ||||||||| | ||| ||||||||||||||||||||||||
seq2  GAACAAT-AAAAGGGGTGC-CCGGAAGCTCGAGGCTGAGGGCTGGAGATT  48

seq1  CTATTGGCCTTGGAAGGCTTTTTTGGGTGAGAACAACTGTCTTGTGTACA  100
      ||||||||| | |||||| ||||||||||  ||||||||| ||| |||||
seq2  CTATTGGCC-TAGAAGGC-TTTTTGGGTGGAAACAACTGT-TTGGGTACA  95

seq1  TTTCCACCAGCATTGTTTCTGTTAGCTGTGGCTTTGCTTTCCAGGGTACT  150
       ||||||||||| ||||||||||||||||||||||||||||||||| |||
seq2  -TTCCACCAGCA-TGTTTCTGTTAGCTGTGGCTTTGCTTTCCAGGG-ACT  142

seq1  GTAGCATAAGAAGACTATGATAAATACATTTGGGGCTGGCATGGTAATGA  200
      |||||||||||| | ||||||||| ||| |||||||||||||||||||||
seq2  GTAGCATAAGAAAATTATGATAAAAACA-TTGGGGCTGGCATGGTAATGA  191

seq1  CCCGCGC-AGCCCTCCCATAGCTGTCTCTTGAGCTTTCTTTCTGTC-TTT  248
      |||| || | ||||||||||||||||||||||||||||||| |||| |||
seq2  CCCGGGCAACCCCTCCCATAGCTGTCTCTTGAGCTTTCTTTATGTCTTTT  241

seq1  CCTATAATCAGCCTCACTTCCCC-TCAGAGG-ACCAGTCGACTTCGTGCG  296
      ||||||||||||||||||||||| ||||||| ||||||||||||||||||
seq2  CCTATAATCAGCCTCACTTCCCCTTCAGAGGAACCAGTCGACTTCGTGCG  291

seq1  GA-CCGACAGGTACATCTCCTCCTTCCCTCAGATGTCAAACAGGAAGGAT  345
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCGACAGGTACATCTCCTCCTTCCCTCAGATGTCAAACAGGAAGGAT  341

seq1  CAGGAAAACAC-AAAGGATATTAGAACTAAGA-GGGGCGGAACTAAGGAG  393
      ||||||||||| |||||||||||||||||||| |||||||||||||||||
seq2  CAGGAAAACACAAAAGGATATTAGAACTAAGAGGGGGCGGAACTAAGGAG  391

seq1  AGGTGGGACTTCCGATGCAGGGAAGGAGATGCGGTTACATTATATAACAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGACTTCCGATGCAGGGAAGGAGATGCGGTTACATTATATAACAA  441

seq1  ACAAGCAGACACTAACAAAGAGAAAAGTCAAGCACTTGTTTAGTTTTTAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAGACACTAACAAAGAGAAAAGTCAAGCACTTGTTTAGTTTTTAA  491

seq1  CTGTGCTATAAATTTTAAACCTAATTCCAAAGTAGCTAGCTATATTATTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTATAAATTTTAAACCTAATTCCAAAGTAGCTAGCTATATTATTA  541

seq1  TACATGAAAGACATGCTGGTCATGGCCCACATTTATAAAATAACAGCACA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGAAAGACATGCTGGTCATGGCCCACATTTATAAAATAACAGCACA  591

seq1  TGCTAGGATGCGAATCAACATTTATTTAATAGAAATGACTCATGGAAAAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGATGCGAATCAACATTTATTTAATAGAAATGACTCATGGAAAAT  641

seq1  GTGTCTCTCCCAGCCAGTAGGATGGTCCAGTGGTTAAAGGCACACGGCCA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCTCCCAGCCAGTAGGATGGTCCAGTGGTTAAAGGCACACGGCCA  691

seq1  GGAAGCCCAACAACCTGACTTCAGCTACCAGACCTTACGCACATGGCGGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCCAACAACCTGACTTCAGCTACCAGACCTTACGCACATGGCGGT  741

seq1  AAGGCATAACTCACAAGCTGTCCTGTGACTTACACATACACACCAAGGAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATAACTCACAAGCTGTCCTGTGACTTACACATACACACCAAGGAA  791

seq1  CAAAATAAATGAATGAATGCAATGCATAGAGTGAGAAAATACAGAATTC  842
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAAATGAATGAATGCAATGCATAGAGTGAGAAAATACAGAATTC  840

seq1: chr8_79745237_79746108
seq2: B6Ng01-036D06.g_68_952

seq1  GAATTCTAGGGGAACCCTGGGAAGTGCATGGGAATTCCAGGGGAACCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGGGAACCCTGGGAAGTGCATGGGAATTCCAGGGGAACCCTG  50

seq1  GGAAGTGCATGGGAATTCCAGAGGAACCCTGGGAAGTGCACGGGAATTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGCATGGGAATTCCAGAGGAACCCTGGGAAGTGCACGGGAATTCC  100

seq1  AGAGGAACCCTGGGAAGTGCACGGGAATTCCAGAGGAACCCTGGGAAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAACCCTGGGAAGTGCACGGGAATTCCAGAGGAACCCTGGGAAGTG  150

seq1  CACGGGAATTCCAGGGGAACCCTGGGAAGTGCACGGGAATTCCAGAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGAATTCCAGGGGAACCCTGGGAAGTGCACGGGAATTCCAGAGGAA  200

seq1  CCCTGGGAAGTGCACGGGAATTCCAGGGGAACCCTGGGAAGTGCACGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGAAGTGCACGGGAATTCCAGGGGAACCCTGGGAAGTGCACGGGA  250

seq1  ATTCCAGGGGAACCCTGGGAAGTGCATGGGAATTCCAGAGGAACCCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGGGGAACCCTGGGAAGTGCATGGGAATTCCAGAGGAACCCTGGG  300

seq1  AAGTGCATGGGAATTCCAGGGGAACCCTGGGAAGTGCATGGGAATTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCATGGGAATTCCAGGGGAACCCTGGGAAGTGCATGGGAATTCCAG  350

seq1  AGGAACCCTGGGAAGTGCATGGGAATTCCAGAGGAACCCTGGGAAGTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCCTGGGAAGTGCATGGGAATTCCAGAGGAACCCTGGGAAGTGCA  400

seq1  TGGGAATTCCAGGGGAACCCTGGGAAGTGCATGGGAATTCCAGAGGAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATTCCAGGGGAACCCTGGGAAGTGCATGGGAATTCCAGAGGAACC  450

seq1  CTGGGAAGTGCATGGGAATTCCAGAGGAACCCTGGGAAGTGCATGGGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAGTGCATGGGAATTCCAGAGGAACCCTGGGAAGTGCATGGGAAT  500

seq1  TCCAGGGGAACCCTGGGAAGTGCATGGGAATTCTAGAGGACCTTTTCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGGAACCCTGGGAAGTGCATGGGAATTCTAGAGGACCTTTTCTAG  550

seq1  CCTTCATGTTTATTAGGCCTGGGAAATACCCACAGTGTTTTCATTTGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATGTTTATTAGGCCTGGGAAATACCCACAGTGTTTTCATTTGAGT  600

seq1  AAATCCTTGAATCAA-CATTGTGGTGTTTTCCTCAAAGGAACTAATTGCT  649
      ||||||||||||||| |||||||||||||||||| |||||||||| ||||
seq2  AAATCCTTGAATCAACCATTGTGGTGTTTTCCTC-AAGGAACTAAATGCT  649

seq1  GCACCACATACTGGCTCTGTCCTTCCAGCCTAGTTCTGGTCACTTAGTGG  699
      ||| |||||||||||||| | |||||||||||| ||| ||||||||||||
seq2  GCA-CACATACTGGCTCT-TTCTTCCAGCCTAG-TCT-GTCACTTAGTGG  695

seq1  AAAAGAGAACATTTTTCTTGATTCTCAAACAAGTAAGAATTGATTACATA  749
      |||| || ||||||||||||||||   ||| ||||   ||||| |||| |
seq2  AAAAAAG-ACATTTTTCTTGATTCCTCAAC-AGTA--GATTGA-TACA-A  739

seq1  TACATGGAAATTGTGCGTCCAAAGCTCACATTGTTTGCTGGCTCCCAGGA  799
      || ||||||||||||||||| |||||||||||| ||||| ||| ||| ||
seq2  TA-ATGGAAATTGTGCGTCC-AAGCTCACATTG-TTGCTTGCT-CCAAGA  785

seq1  CACATGTCCACAGCTCCCAGGACACACACAGATTCCCACAGCT-------  842
      |||||||||||||||| || |  ||||||||||||||| ||||       
seq2  CACATGTCCACAGCTCTCAAGGAACACACAGATTCCCA-AGCTTCCAGAA  834

seq1  ------------------CCCAGGACACACACAC---ATGTCCACAGCTC  871
                         ||||||||| |||||   |||||||||||||
seq2  CCCAACACTGTCCACGGCTCCAGGACACCCACACACAATGTCCACAGCTC  884

seq1  C  872
      |
seq2  C  885