BAC Information

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BAC

Clone NameB6Ng01-036E02
Chromosome8 (Build37)
Map Location 50,054,164 - 50,167,994
singlet/doubletdoublet
Overlap geneLOC100039866
Upstream geneWwc2, LOC100040113, Dctd, Odz3, 2900073C17Rik
Downstream gene4930555F03Rik, LOC100039919, EG667495
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036E02.bB6Ng01-036E02.g
ACCDH864492DH864493
length1,019809
definitionDH864492|Mus musculus domesticus DNA, BAC clone: B6Ng01-036E02, 5' end.DH864493|Mus musculus domesticus DNA, BAC clone: B6Ng01-036E02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,166,932 - 50,167,994)(50,054,164 - 50,054,973)
sequence
gaattctctggcagccaggggaatcaaagggaaacatgttcagtatcaca
gtcctcattgggatctaggagaaagcagaggggttccacagggttattaa
cacatcttgataaaccactcaaatagttgcggtctccagacaaaaacagt
tgcaaccaatctcattatttacaattttgcatgaatttatcatttttcca
tggcctccatataggtttatctagctagcaattggtcgctgtgcagattt
gcttaaaagctggccacttctttaccacgacacagttaaaattctcctct
taaatagagaaagaagtatgtaagagtcctccttcccttaatttttacac
ttcccctcataattatatataacataagatttatctttcatctttttcag
gggcactgtgcttattcataatattgtatatcaacatttttcagaacctt
tccatcatttcaaacagacatggttcttactaaccaataggttaatctac
tatcctcactgcctttacctgtaaaagactacgctctagtttcagcctct
acagtttctgaatcatatgtatcacataaaagtaaatcaaatactctatg
tgttcacttgttcattcatattaattacacagaatgatgagccattgtga
ttttccatacacatatataacacattttcttcatatgtacctacattatt
ctctgccttctccattctgctgatccctttacacttctcggtatatttgt
ccttttgccttgacttatttcacctgacataaggtatcagggcattgtat
aattttatggagaatgtatgtatttctatacatcccagatggtgaggaca
gtatcagacatgaacatatttctctaagtcatatgttgcactagtttctg
catactatgggactcatgtagtagtagttactagttactaccgagctgtg
atcgtagctgagtgctgagctctatgcctaaaaaactagaccagacatgc
agtctttcatgtccagcat
gaattctttgaggagtcacaaacgactgcttctgaaaccagttcattagt
ttacctaatttataatgtccacaccgaaatgccttgctatagcagaaaga
atgaaactgttctcttgtatttaactactaattaattagctagaatccta
gttgctcacgataaccattacagcaatatagtttttatgttcagtaagct
gtatcatttaatatttcaaagaaccatgctatttaagcgggtaggtcctg
cttatcacaaagtagagtgacctcttaataggaacataacgagtggagtt
agcatctgtacctccgaaataaaaacttaacatcaacatgcctattaaca
aaatgagaaaaaactaattaaagcaaattagcctaatgtgcacatgctgg
ataagacagattacttctaaaaatccgcgaagataatggtacccatatgg
gatctgtttttggcatttttcatataaattggacagttttagaggataaa
tatggtataaaagtccttacaggcaattatgtctttacaatgctggtggc
tgacatcataaaagtataattttaattgctataaattgcattaaagtcta
ctcttgttgaatacttaatgccatctctgacagtgtattaattaatatac
tttaatgaagcttcatggtagaagttagagttatagaggcctcttaaact
tatagcttgagtagtttatttttatcggacaacaagtttgagatatagga
cattaattgattattatttttttcttttgaaagagttaacagctccttct
tttcggtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_50166932_50167994
seq2: B6Ng01-036E02.b_45_1063 (reverse)

seq1  ATGCTATGACATGAAAGACTGGCCCTGTGTCCTGTGTTCTAGTTTTTTTT  50
      |||||  ||||||||||||||  | ||     | || |||||||||||  
seq2  ATGCT-GGACATGAAAGACTG--CATG-----TCTGGTCTAGTTTTTT--  40

seq1  TAAGGGCATAAGGAGGCTCAGCAACTCAGCTACCGAAATCACCAAGCTCG  100
          ||||||  || ||||||| ||||||||||    |||||  ||||||
seq2  ---AGGCATA--GA-GCTCAGC-ACTCAGCTAC---GATCAC--AGCTCG  78

seq1  TGTAAGTAAACTAAGTAAACTACTTACTTACATGAGTTCCCATAAGTAAT  150
       || ||| |||| ||| |||||| ||| |||||||| |||||| ||||  
seq2  -GT-AGT-AACT-AGT-AACTAC-TAC-TACATGAG-TCCCAT-AGTA--  117

seq1  TGCAGGAAACTTAGTGCACCAATATGGACTTAGAGAAATATGTTTCATTG  200
      |||| ||||| ||||||| | |||| |||||||||||||||| |||||  
seq2  TGCA-GAAAC-TAGTGCAAC-ATAT-GACTTAGAGAAATATG-TTCAT--  160

seq1  GTCTGATACTGTCCTCACCATCTGGGATGTATAGAAATACATACATTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATACTGTCCTCACCATCTGGGATGTATAGAAATACATACATTCTC  210

seq1  CATAAAATTTATACAATGCCCTGATAACCTTATGTCAGGTGAAATAAGTC  300
      ||||||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  CATAAAA-TTATACAATGCCCTGAT-ACCTTATGTCAGGTGAAATAAGTC  258

seq1  AAGGCAAAAGGACAAATATTACCTGAGAAGTGTAAAGGGATCAGCAGAAT  350
      |||||||||||||||||| |||| ||||||||||||||||||||||||||
seq2  AAGGCAAAAGGACAAATA-TACC-GAGAAGTGTAAAGGGATCAGCAGAAT  306

seq1  GGAGAAGGCAGAGAATAATGTAGGTACATATGAAGAAAATGTGTTATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGGCAGAGAATAATGTAGGTACATATGAAGAAAATGTGTTATATA  356

seq1  TGTGTATGGAAAATCACAATGGCTCATCATTCTGTGTAATTAATATGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGGAAAATCACAATGGCTCATCATTCTGTGTAATTAATATGAAT  406

seq1  GAACAAGTGAACACATAGAGTATTTGATTTACTTTTATGTGATACATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGTGAACACATAGAGTATTTGATTTACTTTTATGTGATACATATG  456

seq1  ATTCAGAAACTGTAGAGGCTGAAACTAGAGCGTAGTCTTTTACAGGTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAAACTGTAGAGGCTGAAACTAGAGCGTAGTCTTTTACAGGTAAA  506

seq1  GGCAGTGAGGATAGTAGATTAACCTATTGGTTAGTAAGAACCATGTCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGAGGATAGTAGATTAACCTATTGGTTAGTAAGAACCATGTCTGT  556

seq1  TTGAAATGATGGAAAGGTTCTGAAAAATGTTGATATACAATATTATGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATGATGGAAAGGTTCTGAAAAATGTTGATATACAATATTATGAAT  606

seq1  AAGCACAGTGCCCCTGAAAAAGATGAAAGATAAATCTTATGTTATATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAGTGCCCCTGAAAAAGATGAAAGATAAATCTTATGTTATATATA  656

seq1  ATTATGAGGGGAAGTGTAAAAATTAAGGGAAGGAGGACTCTTACATACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGAGGGGAAGTGTAAAAATTAAGGGAAGGAGGACTCTTACATACTT  706

seq1  CTTTCTCTATTTAAGAGGAGAATTTTAACTGTGTCGTGGTAAAGAAGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTATTTAAGAGGAGAATTTTAACTGTGTCGTGGTAAAGAAGTGG  756

seq1  CCAGCTTTTAAGCAAATCTGCACAGCGACCAATTGCTAGCTAGATAAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTTTAAGCAAATCTGCACAGCGACCAATTGCTAGCTAGATAAACC  806

seq1  TATATGGAGGCCATGGAAAAATGATAAATTCATGCAAAATTGTAAATAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGAGGCCATGGAAAAATGATAAATTCATGCAAAATTGTAAATAAT  856

seq1  GAGATTGGTTGCAACTGTTTTTGTCTGGAGACCGCAACTATTTGAGTGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGGTTGCAACTGTTTTTGTCTGGAGACCGCAACTATTTGAGTGGT  906

seq1  TTATCAAGATGTGTTAATAACCCTGTGGAACCCCTCTGCTTTCTCCTAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAGATGTGTTAATAACCCTGTGGAACCCCTCTGCTTTCTCCTAGA  956

seq1  TCCCAATGAGGACTGTGATACTGAACATGTTTCCCTTTGATTCCCCTGGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATGAGGACTGTGATACTGAACATGTTTCCCTTTGATTCCCCTGGC  1006

seq1  TGCCAGAGAATTC  1063
      |||||||||||||
seq2  TGCCAGAGAATTC  1019

seq1: chr8_50054164_50054973
seq2: B6Ng01-036E02.g_67_875

seq1  GAATTCTTTGAGGAGTCACAAACGACTGCTTCTGAAACCAGTTCATTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAGGAGTCACAAACGACTGCTTCTGAAACCAGTTCATTAGT  50

seq1  TTACCTAATTTATAATGTCCACACCGAAATGCCTTGCTATAGCAGAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTAATTTATAATGTCCACACCGAAATGCCTTGCTATAGCAGAAAGA  100

seq1  ATGAAACTGTTCTCTTGTATTTAACTACTAATTAATTAGCTAGAATCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACTGTTCTCTTGTATTTAACTACTAATTAATTAGCTAGAATCCTA  150

seq1  GTTGCTCACGATAACCATTACAGCAATATAGTTTTTATGTTCAGTAAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTCACGATAACCATTACAGCAATATAGTTTTTATGTTCAGTAAGCT  200

seq1  GTATCATTTAATATTTCAAAGAACCATGCTATTTAAGCGGGTAGGTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATTTAATATTTCAAAGAACCATGCTATTTAAGCGGGTAGGTCCTG  250

seq1  CTTATCACAAAGTAGAGTGACCTCTTAATAGGAACATAACGAGTGGAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCACAAAGTAGAGTGACCTCTTAATAGGAACATAACGAGTGGAGTT  300

seq1  AGCATCTGTACCTCCGAAATAAAAACTTAACATCAACATGCCTATTAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTGTACCTCCGAAATAAAAACTTAACATCAACATGCCTATTAACA  350

seq1  AAATGAGAAAAAACTAATTAAAGCAAATTAGCCTAATGTGCACATGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGAAAAAACTAATTAAAGCAAATTAGCCTAATGTGCACATGCTGG  400

seq1  ATAAGACAGATTACTTCTAAAAATCCGCGAAGATAATGGTACCCATATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACAGATTACTTCTAAAAATCCGCGAAGATAATGGTACCCATATGG  450

seq1  GATCTGTTTTTGGCATTTTTCATATAAATTGGACAGTTTTAGAGGATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTTTTTGGCATTTTTCATATAAATTGGACAGTTTTAGAGGATAAA  500

seq1  TATGGTATAAAAGTCCTTACAGGCAATTATGTCTTTACAATGCTGGTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTATAAAAGTCCTTACAGGCAATTATGTCTTTACAATGCTGGTGGC  550

seq1  TGACATCATAAAAGTATAATTTTAATTGCTATTAATTGCATT-AAGTCTA  599
      |||||||||||||||||||||||||||||||| ||||||||| |||||||
seq2  TGACATCATAAAAGTATAATTTTAATTGCTATAAATTGCATTAAAGTCTA  600

seq1  CTCTTGTTGAATACTTAATGCCATCTCTGACAGTGGTATTAATTTATATA  649
      |||||||||||||||||||||||||||||||||| ||||||||| |||||
seq2  CTCTTGTTGAATACTTAATGCCATCTCTGACAGT-GTATTAATTAATATA  649

seq1  CTTTAATGAAGCTTCATGGTAGAAGTTTAGAGTTATAGA-GCCACTTAAA  698
      ||||||||||||||||||||||||| ||||||||||||| ||| ||||||
seq2  CTTTAATGAAGCTTCATGGTAGAAG-TTAGAGTTATAGAGGCCTCTTAAA  698

seq1  C-TATAGCTTGAGTAGTATA-TTTTATCGGACAACAAGTTTGAGATATAA  746
      | ||||||||||||||| || ||||||||||||||||||||||||||| |
seq2  CTTATAGCTTGAGTAGTTTATTTTTATCGGACAACAAGTTTGAGATAT-A  747

seq1  GGACATTTAATTGATTATTA-TTTTTTCTTTGAAAAGAGGTTTACAGCTC  795
      ||||| |||||||||||||| ||||||||||  ||||| ||| |||||| 
seq2  GGACA-TTAATTGATTATTATTTTTTTCTTTTGAAAGA-GTTAACAGCT-  794

seq1  CCTCCTTTTCGGTGT  810
      ||| |||||||||||
seq2  CCTTCTTTTCGGTGT  809