BAC Information

Click to search

BAC

Clone NameB6Ng01-036G04
Chromosome8 (Build37)
Map Location 3,753,728 - 3,754,791
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664801, EG209786, D630014A15Rik, Insr, A430078G23Rik, Arhgef18, Pex11c, 1700019B03Rik, Zfp358, Mcoln1, Pnpla6, C330021F23Rik, 2310057J16Rik, Xab2, Pcp2, Stxbp2, Retn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a
Downstream geneLOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036G04.bB6Ng01-036G04.g
ACCDH864577DH864578
length1,051870
definitionDH864577|Mus musculus domesticus DNA, BAC clone: B6Ng01-036G04, 5' end.DH864578|Mus musculus domesticus DNA, BAC clone: B6Ng01-036G04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttccccagaggaagtggtggctgccataacaaacactgccagga
gcaaactaatacctttccattactgtccccattccactttctccaagaaa
acaggttgaatttagcaatgaggatgaatgcacctctacttcagccctct
tgctgtcaggttccaaggtgtcctctagccctgctgtctcaggtccctca
ctcactaatccttctgctcccaccccatcagaggtacccctagcttaccc
ctggtgtgatttaggggaactttgccttctagtgatcactcttgcggtgc
tcactcctgcaatgcctgtccctcatgctggactgcctcttccctgggag
cctcattcccctcaggtatatcgtgagactttccctgtcagttttggccc
tgatgcagtgactaggcccttgatttcaactcttctggcagagttcgcac
caatcagaaaagctgccaatgattctggcccagattccccctattttgaa
caagtagtgaagcaatggcccatgcaactacagacctattacaattggta
taatctccttaaaagtggtgctcaaccccactgtttctttcttctttctt
tcttttctttctttcctttcttcctttctttctttcttcctccctccttt
ctttcttttctttcctaattagtcaagttccgaccgtcttctcagcgcct
cccccaggggccttgggccaccccgggcgggccgatccgagggccttcat
taaaccatccaattcccaagggggggggggtacaaaggcagggacttcaa
gcttatgacccgcacttccgggaattccccgtccaggggaataattgcaa
tccccatccccctcacgaagggggttaacaagtacccttgttctgccggg
ttggggaggcccccttgacccgtcagtgtacgcatgtcagttcccggaac
tctaagggataccaaaccgtttttgtcaacttgggggctaaacccccctg
tcccctaagaattggggggacccactgttttctaattaagggtctggcat
a
gaattcactcggacaaccggatccttctacagcaaagcttttattgcttc
ttcaggagggatgaccccgaacccagaaaatggtgctgcttatatagccc
gcagcgtgacatttcagcacctgatgtggcgtgacagcacctgattcgtt
gctcgcccatcaccccattactacaccccgagatgggcagtgactaggtg
tgagttcactctcgcacctgcgtacaaggcttgtttactagttaggcaca
gcagaggccagcgccatcttataatggcgatcgctcgcagcacggctctc
cacatctttctttaggtgagggaagttttcttctataatttcgttgaaca
tatttactggccctttaagttgaaaatcttcattctcatctatacctata
atccttaggtttggtctcttcattgtgtcctggatttcctggatgttttg
agttaggatctttttgcattttgcattttctttgattgttgtgttcatgt
tttctatggaatcttctgtacctaagattctctcttccatctcttgtatt
ctgttgctgacgtttcacatctatggttcctgatttctttctagggtttt
ttttttaagatttattttttttttattatatgtaagtacactgtagctat
cttcagacacttcagaagaggggaatcagatcttgttacaggatgattgt
gagccacaatgtggttgctgggatttgacctcagatgttgaggagcagtc
ggtgctcttacactgaagacatctctcagcacattccaggttttatctca
gagtttctcccttggttttcttactgtctacttcatttaagtctggatgg
ttgtcattcaatacctggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_3753728_3754791
seq2: B6Ng01-036G04.b_41_1091

seq1  GAATTCTTCCCCAGAGGAAGTGGTGGCTGCCATAACAAACACTGCCAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCCAGAGGAAGTGGTGGCTGCCATAACAAACACTGCCAGGA  50

seq1  GCAAACTAATACCTTTCCATTACTGTCCCCATTCCACTTTCTCCAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTAATACCTTTCCATTACTGTCCCCATTCCACTTTCTCCAAGAAA  100

seq1  ACAGGTTGAATTTAGCAATGAGGATGAATGCACCTCTACTTCAGCCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTGAATTTAGCAATGAGGATGAATGCACCTCTACTTCAGCCCTCT  150

seq1  TGCTGTCAGGTTCCAAGGTGTCCTCTAGCCCTGCTGTCTCAGGTCCCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCAGGTTCCAAGGTGTCCTCTAGCCCTGCTGTCTCAGGTCCCTCA  200

seq1  CTCACTAATCCTTCTGCTCCCACCCCATCAGAGGTACCCCTAGCTTACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTAATCCTTCTGCTCCCACCCCATCAGAGGTACCCCTAGCTTACCC  250

seq1  CTGGTGTGATTTAGGGGAACTTTGCCTTCTAGTGATCACTCTTGCGGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTGATTTAGGGGAACTTTGCCTTCTAGTGATCACTCTTGCGGTGC  300

seq1  TCACTCCTGCAATGCCTGTCCCTCATGCTGGACTGCCTCTTCCCTGGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCTGCAATGCCTGTCCCTCATGCTGGACTGCCTCTTCCCTGGGAG  350

seq1  CCTCATTCCCCTCAGGTATATCGTGAGACTTTCCCTGTCAGTTTTGGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTCCCCTCAGGTATATCGTGAGACTTTCCCTGTCAGTTTTGGCCC  400

seq1  TGATGCAGTGACTAGGCCCTTGATTTCAACTCTTCTGGCAGAGTTCGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCAGTGACTAGGCCCTTGATTTCAACTCTTCTGGCAGAGTTCGCAC  450

seq1  CAATCAGAAAAGCTGCCAATGATTCTGGCCCAGATTCCCCCTATTTTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGAAAAGCTGCCAATGATTCTGGCCCAGATTCCCCCTATTTTGAA  500

seq1  CAAGTAGTGAAGCAATGGCCCATGCAACTACAGACCTATTACAATTGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGTGAAGCAATGGCCCATGCAACTACAGACCTATTACAATTGGTA  550

seq1  TAATCTCCTT-AAAGTGGTGCTCAACCCCACTGTTTTCTTTCTTCTTTCT  599
      |||||||||| |||||||||||||||||||||| ||||||||||||||||
seq2  TAATCTCCTTAAAAGTGGTGCTCAACCCCACTG-TTTCTTTCTTCTTTCT  599

seq1  TTCTTTCTTTCTTTCTTT-CTTTCTTTCTTTCTTTCTTTCTTTCTTCCTT  648
      ||||   ||||||||||| ||||||| ||||||||||||| ||| ||| |
seq2  TTCT---TTTCTTTCTTTCCTTTCTTCCTTTCTTTCTTTC-TTCCTCCCT  645

seq1  CCTTTCTTTC-TTTCTTTCTTATTTAGTCAAGTT-CGACCGTCTTCTCAG  696
      |||||||||| |||||||| || ||||||||||| |||||||||||||||
seq2  CCTTTCTTTCTTTTCTTTCCTAATTAGTCAAGTTCCGACCGTCTTCTCAG  695

seq1  CG-CTCCCCCA-GGGCCATGGGCCAACCCCGGCGGGCCGATCCGAGGGCC  744
      || |||||||| ||||| ||||||| ||| ||||||||||||||||||||
seq2  CGCCTCCCCCAGGGGCCTTGGGCCACCCCGGGCGGGCCGATCCGAGGGCC  745

seq1  -TCACTAAACCATCCAA-TCACGAAGGGCGGTGTGTACAAAGGTCAGGGA  792
       ||| |||||||||||| || | | ||| || | ||||||||| ||||||
seq2  TTCATTAAACCATCCAATTCCCAAGGGGGGGGGGGTACAAAGG-CAGGGA  794

seq1  CTTCAAGCTTATGACCCGCACTTACTGGGAATTCCTCGTCCATGGGGAAT  842
      ||||||||||||||||||||||| | ||||||||| |||||| |||||||
seq2  CTTCAAGCTTATGACCCGCACTT-CCGGGAATTCCCCGTCCA-GGGGAAT  842

seq1  AATTGCAATCCCCAATCCCCATCACGAATGGGGTTTAACGAGTTACCCGT  892
      ||||||||||||| |||||| ||||||| |||| ||||| || ||||| |
seq2  AATTGCAATCCCC-ATCCCCCTCACGAA-GGGGGTTAACAAG-TACCCTT  889

seq1  G-TCTGCCTGTGTAGGGTAGGCACACACTGAGCCAGTCAGTGTAGCGCAT  941
      | |||||| | || ||| |||| | |  ||| || ||||||||| |||||
seq2  GTTCTGCC-GGGTTGGGGAGGC-CCCCTTGA-CCCGTCAGTGTA-CGCAT  935

seq1  GTGCAGCT-CCGGACATCTAAGGGCATCACAGACCTGTTATTGCTCAATC  990
      || ||| | |||||  |||||||| ||  || ||| ||| ||| |||| |
seq2  GT-CAGTTCCCGGAACTCTAAGGG-ATACCAAACC-GTTTTTG-TCAA-C  980

seq1  TTGGGTGGCTGAGCGCCACTTGTTCCGCTAAGAAGTTGGGGGACCCACTG  1040
      ||||| |||| | | || ||   ||| ||||||| | |||||||||||||
seq2  TTGGG-GGCTAAACCCCCCT--GTCCCCTAAGAATTGGGGGGACCCACTG  1027

seq1  TTTTCTTAATTAGAGGTCT-GCATA  1064
      ||||| ||||||  ||||| |||||
seq2  TTTTC-TAATTAAGGGTCTGGCATA  1051