BAC Information

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BAC

Clone NameB6Ng01-036H14
Chromosome11 (Build37)8 (Build37)
Map Location 89,171,691 - 89,172,532109,608,037 - 109,608,371
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMsi2, LOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047
Downstream gene4932411E22Rik, Ankfn1, Pctp, Tmem100, LOC100039104, Mmd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036H14.bB6Ng01-036H14.g
ACCDH864640DH864641
length839670
definitionDH864640|Mus musculus domesticus DNA, BAC clone: B6Ng01-036H14, 5' end.DH864641|Mus musculus domesticus DNA, BAC clone: B6Ng01-036H14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(89,171,691 - 89,172,532)(109,608,037 - 109,608,371)
sequence
gaattccaaaacaggaggtggggacactgttgagagaaacgacatgggcc
ttctgttgtacttgaccagtttccacatgttactgtgtatggaaatctct
gggcccacaggtaccgatgacccctaaagccaaatatgattcaaagccag
aaggcagatgcatgaaaaatcccagaccccatgcaggtcacagttctgag
ctaaaagcccctactcccaccccactctccttacagtgatcctggaatct
tgactgtggctttaagaagctctcttatctcttggttcctcaatgtctct
acctacaaaatggggagatggcagtaatccctccttcccctccagaagct
ccagggagatttccagaagaccctgactgccagacaggttattagatgtc
atctgtattaacattgagttctagtttcccagacctgaaacagaaagaat
aagtatcttttgtgttcctttgatggccctgtccttcagaccactgattt
taggtcatttatttccagtctccaactttcccctcaaacccattccagac
tgaagagttagttgttgaccaagcatgagattggctcaggctgccttttc
cgttttgttttgctttgttctcaacctgatggtgggctttgactcgggga
tcatttttatgttgaaagcagtctcgttgctctgtagaagtctgagacag
gagattaaagcatcatgaaacagcgtctgtcacatattcatacacacgca
cacacgtacgcaccccctgtgctcagagcctcgtcaatgtgcctggccct
tcacgtttcactgagcttgagcaatgaccatttacccaa
gaattcctcaggtgagagtccctgcttaggttattctaaattgtggtaag
ttgacctgtaaaaaccaatcaccacacatacttttaccttgcgatccagg
aaccacattctttggcatttacccaaaagagttgaaaagttattcctcat
tcattcattcattcattcattcattcattcattcattttcccttctcctt
ccccttgcctctctcttcaaagctctccaaaaccgaactccggcacacag
ttgtgactcatcagctttgtttatgatttcacagacttgggaggagccaa
atctccttcagaaggtgaaaggataaataaaccatagcttcggcccccga
ataaattatttacgacctcacagaaatgcacggtggagatataaggcaag
gtttatcatctaaaccgcaaatttctgagtggaaaacataggtactgggt
gattctgaccacaggacattctgagaaaagcaagactgtagggctctcga
cagtaagaagataaatgaacggcagggttagaaaggggtgagggaggaag
aggtatttcacagaggattctttctgcttgtttgctttaaaaaaaaaatt
ggccgggcatggtggcgcacgcctttaattccagcactccggaggcagag
gcaggaggatttctgagttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_89171691_89172532
seq2: B6Ng01-036H14.b_48_886 (reverse)

seq1  TTGGTTAAATGGTTCATTGCTCAAGCTCAGTGGAAACGTG-AGGGCCAGG  49
      |||| ||||||| |||||||||||||||||| |||||||| |||||||||
seq2  TTGGGTAAATGG-TCATTGCTCAAGCTCAGT-GAAACGTGAAGGGCCAGG  48

seq1  CACATTTGACGAGGCTCTGAGCACAGGGGGTGCGTACGTGTGTGCGTGTG  99
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CACA-TTGACGAGGCTCTGAGCACAGGGGGTGCGTACGTGTGTGCGTGTG  97

seq1  TATGAATATGTGACAGACGCTGTTTCATGATGCTTTAATCTCCTGTCTCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATATGTGACAGACGCTGTTTCATGATGCTTTAATCTCCTGTCTCA  147

seq1  GACTTCTACAGAGCAACGAGACTGCTTTCAACATAAAAATGATCCCCGAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTACAGAGCAACGAGACTGCTTTCAACATAAAAATGATCCCCGAG  197

seq1  TCAAAGCCCACCATCAGGTTGAGAAACAAAGCAAAACAAAACGGAAAAGG  249
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCAAAGCCCACCATCAGGTTGAG-AACAAAGCAAAACAAAACGGAAAAGG  246

seq1  CAGCCTGAGCCAATCTCATGCTTGGTCAACAACTAACTCTTCAGTCTGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGAGCCAATCTCATGCTTGGTCAACAACTAACTCTTCAGTCTGGA  296

seq1  ATGGGTTTGAGGGGAAAGTTGGAGACTGGAAATAAATGACCTAAAATCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTTGAGGGGAAAGTTGGAGACTGGAAATAAATGACCTAAAATCAG  346

seq1  TGGTCTGAAGGACAGGGCCATCAAAGGAACACAAAAGATACTTATTCTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGAAGGACAGGGCCATCAAAGGAACACAAAAGATACTTATTCTTT  396

seq1  CTGTTTCAGGTCTGGGAAACTAGAACTCAATGTTAATACAGATGACATCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCAGGTCTGGGAAACTAGAACTCAATGTTAATACAGATGACATCT  446

seq1  AATAACCTGTCTGGCAGTCAGGGTCTTCTGGAAATCTCCCTGGAGCTTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCTGTCTGGCAGTCAGGGTCTTCTGGAAATCTCCCTGGAGCTTCT  496

seq1  GGAGGGGAAGGAGGGATTACTGCCATCTCCCCATTTTGTAGGTAGAGACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGAAGGAGGGATTACTGCCATCTCCCCATTTTGTAGGTAGAGACA  546

seq1  TTGAGGAACCAAGAGATAAGAGAGCTTCTTAAAGCCACAGTCAAGATTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGAACCAAGAGATAAGAGAGCTTCTTAAAGCCACAGTCAAGATTCC  596

seq1  AGGATCACTGTAAGGAGAGTGGGGTGGGAGTAGGGGCTTTTAGCTCAGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCACTGTAAGGAGAGTGGGGTGGGAGTAGGGGCTTTTAGCTCAGAA  646

seq1  CTGTGACCTGCATGGGGTCTGGGATTTTTCATGCATCTGCCTTCTGGCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACCTGCATGGGGTCTGGGATTTTTCATGCATCTGCCTTCTGGCTT  696

seq1  TGAATCATATTTGGCTTTAGGGGTCATCGGTACCTGTGGGCCCAGAGATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCATATTTGGCTTTAGGGGTCATCGGTACCTGTGGGCCCAGAGATT  746

seq1  TCCATACACAGTAACATGTGGAAACTGGTCAAGTACAACAGAAGGCCCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATACACAGTAACATGTGGAAACTGGTCAAGTACAACAGAAGGCCCAT  796

seq1  GTCGTTTCTCTCAACAGTGTCCCCACCTCCTGTTTTGGAATTC  842
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTTTCTCTCAACAGTGTCCCCACCTCCTGTTTTGGAATTC  839

seq1: chr8_109608037_109608371
seq2: B6Ng01-036H14.g_649_736 (reverse)

seq1  AAACTCAGAAATCCACCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGT  50
      |||||||||||||| ||||||||||||||| ||||||||| |||||||| 
seq2  AAACTCAGAAATCCTCCTGCCTCTGCCTCCGGAGTGCTGGAATTAAAGGC  50

seq1  GTGCGCCACCACGCCCGGCTACACTTACTTTCTTAA--CACAGCTTTTAT  98
      ||||||||||| |||||||  || ||  ||| ||||  ||          
seq2  GTGCGCCACCATGCCCGGC--CAATTTTTTTTTTAAAGCA----------  88

seq1  TTTTTTATAAACCATAACAGTTCTATTAGGTTTATGTGCAATTAAGTTCT  148
                                                        
seq2  --------------------------------------------------  88

seq1  ACACAGAAAAACTGGTTAGGACAGATGGCACGAAATGTTAACACACCCAG  198
                                                        
seq2  --------------------------------------------------  88

seq1  ACTTCTGTATCTGCAAGAATACAAAACTAATATCCTCAATGCTCACTTCC  248
                                                        
seq2  --------------------------------------------------  88

seq1  CAAACCCTTCTTTTTGCTATTTTGTGTCTTTTAGTGTATAAGTGGCACTA  298
                                                        
seq2  --------------------------------------------------  88

seq1  TTTCTTGCTTTTTTAGTTTTTTTTTTTTTTTAAAGCA  335
                                           
seq2  -------------------------------------  88