BAC Information

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BAC

Clone NameB6Ng01-036K09
Chromosome8 (Build37)
Map Location 98,726,934 - 98,896,950
singlet/doubletdoublet
Overlap genenone
Upstream geneBC016201, Map1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15, Gtl3, Csnk2a2, 4933406B17Rik, Ccdc113, 4931432M23Rik, EG546088, LOC100041040, Gins3, LOC547022, Ndrg4, Setd6, Cnot1, LOC100041953, LOC100041088, BC031853, LOC100041972, Got2, LOC667445
Downstream geneLOC333331
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036K09.bB6Ng01-036K09.g
ACCDH864756DH864757
length1,0981,017
definitionDH864756|Mus musculus domesticus DNA, BAC clone: B6Ng01-036K09, 5' end.DH864757|Mus musculus domesticus DNA, BAC clone: B6Ng01-036K09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,895,830 - 98,896,950)(98,726,934 - 98,727,951)
sequence
gaattcacactctctccccgcccaccgttatcccttattttgagcagaag
aaaactgttagctttgtgaactgcttgagtgtgaagaaaagccacacgct
gcttgtttctgaagcatgcattcatcatttacaaacaattgttgaatacc
taacatacgggacggggctgtataacaaggtgtaaagataaactgcccct
tacagttgggttacatgtgtgctgaaaattacatttacaggcaaaacatc
attcacgaactcagcattaaaaagaacagatctgtaatgttcttgcctcc
aatatgatatgttggcaaggtgatgggtatgttaattagtttgagtgaat
cttttcgcagcagcatatacacagattaagacatcacattatgctctgta
gatatacacacttgttacttgtaaattaaagaagagataagttggaattg
gtaagattaaataactctttgaaggtcacatagacagaagttaatgcact
ggttcttgctcaaaattctcatgatctttagacaatcacaggatgttcaa
gcctgagacttaccaggaaggacacttggacagacataggttggacagac
ataggttcaccaccccaaggatgcatatcatgcattatgttccaccagag
agaaaaggcaaacaaaactaagatatcagattttatcagctaaaagtaaa
aatatttaaataaaaggagcattttcaactagtagttttattttccaaat
atattacatatttatacatggtgaatgagagatgtttttgagactctgta
gcccaaagtgaccataaactcacagaaaaacctccttctttggccttact
agtctcctgaagttactgggtaaagaaagagttaacctgctctaatgcct
cgaatatgttgcattttaaaatatttgtgttattaaactttttgtttgta
ggagtgataagctccctttcagtgttagaagagcaaatcttcgatgggat
gaccagaaggaaattctactgaagactgtgtcagcagcatcaggcctcat
ctttcatagccaaaatgaaagcaggctttctaacagttgcacttggtc
gaattccttaacaagttgatatctaatgtcactcatatcaaaatttaaga
gaaacaaagatggctgtttctggctaagagggagcagatttgcccatttg
cctgcaagatactgaacatcaatcaacaatgactacccagagatgacaaa
gaaatcggatggattatcaacttttcaaacagcttaagggaaaccaaggt
gcagcctgcagttaaagaaacatagcggaaggtacaaggagaccaatact
aagtgtggcagaagaggaagctacacaaagaaagaactccaatggtctca
agagagtcctgctcagatattcagccaagtactgaaaagaggaaaataca
tgagaggaagttatctgccatgaggaacacagctatgtgaagagatgagg
ttacagggctagaaatactctgtaccactgagcagacttaaaaggcacac
ggctcctggcgtgtctggcagagttcatggaaggatcttgctttaggatt
ggggaataaccatctctggatggagcactgtcagagagtcacggaaggag
tagccgcagaaagatgcagaaagcccacactgttttcaagtcatttagtt
gcatccaagaacaaagctcaacagttacttatgaggatacacaaataccc
aactgttcagcatggtaactctcaagctctggggttcagcacacacttaa
ggaggcaggcaaatattaaggaaaccactatttcctaatggaggaatcaa
taaattcaaaatcaaataggaactgggtagatcttaagatgatcagacac
tggccaattagacagttttaattgtggtcctatgttgttatgaaaataaa
cataccagtagccatggtgtgtgtgtgtgtgtaactgatggatttgattc
taaaatcatgtggaaagagaaaaaaaacacaacactaaactcttataacc
aactttctttgacaagatggagttacagggcttactgacctgctttgaaa
cgacagctgaatatgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_98895830_98896950
seq2: B6Ng01-036K09.b_46_1143 (reverse)

seq1  GACCAAGTTGGCAAACTGTTGAGAAAGCCTGCCTTTTCATTTTGCGCATT  50
      ||||||||  || ||||||| |||||||||||  |||||||||| ||  |
seq2  GACCAAGT--GC-AACTGTT-AGAAAGCCTGC--TTTCATTTTG-GCTAT  43

seq1  AGAAGATGGAGGCCTGGATGCTGCTTGGACACAGTCTTCAGTAGAGATTT  100
        ||||| ||||||| |||||||||  |||||||||||||||  ||| ||
seq2  GAAAGAT-GAGGCCT-GATGCTGCT--GACACAGTCTTCAGT--AGAATT  87

seq1  TCCTTCTTGGTCATCCCATCGAAGATTTTGCTCCTTCTAACACTGGAAGG  150
      |||||| |||||||||||||||||| |||||| |||||||||||| ||||
seq2  TCCTTC-TGGTCATCCCATCGAAGA-TTTGCT-CTTCTAACACTGAAAGG  134

seq1  GAGCTTTATCACTCCTACAAAACAAAAAGTTTTAAATAACACAAATATTT  200
      |||| ||||||||||||| |||||||||||||  ||||||||||||||||
seq2  GAGC-TTATCACTCCTAC-AAACAAAAAGTTT--AATAACACAAATATTT  180

seq1  TAAAAATGCAACATATTTCGAGGCATAGGAGCAGGTTAACTCTTTCTTTA  250
      | ||||||||||||| ||||||||||  ||||||||||||||||||||||
seq2  T-AAAATGCAACATA-TTCGAGGCATTAGAGCAGGTTAACTCTTTCTTTA  228

seq1  CCCAGTAACTTCAGGGAGACTAGTAAGGCCAAAGAAGGAGGTTTTTCTGT  300
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCCAGTAACTTCA-GGAGACTAGTAAGGCCAAAGAAGGAGGTTTTTCTGT  277

seq1  GAGTTTATGGTCACTTTGGGCTACAGAGTCTCAAAAACATCTCTCATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTATGGTCACTTTGGGCTACAGAGTCTCAAAAACATCTCTCATTCA  327

seq1  CCATGTATAAATATGTAATATATTTGGAAAATAAAACTACTAGTTGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTATAAATATGTAATATATTTGGAAAATAAAACTACTAGTTGAAAA  377

seq1  TGCTCCTTTTATTTAAATATTTTTACTTTTAGCTGATAAAATCTGATATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTTTTATTTAAATATTTTTACTTTTAGCTGATAAAATCTGATATC  427

seq1  TTAGTTTTGTTTGCCTTTTCTCTCTGGTGGAACATAATGCATGATATGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTGTTTGCCTTTTCTCTCTGGTGGAACATAATGCATGATATGCA  477

seq1  TCCTTGGGGTGGTGAACCTATGTCTGTCCAACCTATGTCTGTCCAAGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGGGTGGTGAACCTATGTCTGTCCAACCTATGTCTGTCCAAGTGT  527

seq1  CCTTCCTGGTAAGTCTCAGGCTTGAACATCCTGTGATTGTCTAAAGATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTGGTAAGTCTCAGGCTTGAACATCCTGTGATTGTCTAAAGATCA  577

seq1  TGAGAATTTTGAGCAAGAACCAGTGCATTAACTTCTGTCTATGTGACCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATTTTGAGCAAGAACCAGTGCATTAACTTCTGTCTATGTGACCTT  627

seq1  CAAAGAGTTATTTAATCTTACCAATTCCAACTTATCTCTTCTTTAATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGTTATTTAATCTTACCAATTCCAACTTATCTCTTCTTTAATTTA  677

seq1  CAAGTAACAAGTGTGTATATCTACAGAGCATAATGTGATGTCTTAATCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAACAAGTGTGTATATCTACAGAGCATAATGTGATGTCTTAATCTG  727

seq1  TGTATATGCTGCTGCGAAAAGATTCACTCAAACTAATTAACATACCCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATGCTGCTGCGAAAAGATTCACTCAAACTAATTAACATACCCATC  777

seq1  ACCTTGCCAACATATCATATTGGAGGCAAGAACATTACAGATCTGTTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCCAACATATCATATTGGAGGCAAGAACATTACAGATCTGTTCTT  827

seq1  TTTAATGCTGAGTTCGTGAATGATGTTTTGCCTGTAAATGTAATTTTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGCTGAGTTCGTGAATGATGTTTTGCCTGTAAATGTAATTTTCAG  877

seq1  CACACATGTAACCCAACTGTAAGGGGCAGTTTATCTTTACACCTTGTTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGTAACCCAACTGTAAGGGGCAGTTTATCTTTACACCTTGTTAT  927

seq1  ACAGCCCCGTCCCGTATGTTAGGTATTCAACAATTGTTTGTAAATGATGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCCGTCCCGTATGTTAGGTATTCAACAATTGTTTGTAAATGATGA  977

seq1  ATGCATGCTTCAGAAACAAGCAGCGTGTGGCTTTTCTTCACACTCAAGCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGCTTCAGAAACAAGCAGCGTGTGGCTTTTCTTCACACTCAAGCA  1027

seq1  GTTCACAAAGCTAACAGTTTTCTTCTGCTCAAAATAAGGGATAACGGTGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACAAAGCTAACAGTTTTCTTCTGCTCAAAATAAGGGATAACGGTGG  1077

seq1  GCGGGGAGAGAGTGTGAATTC  1121
      |||||||||||||||||||||
seq2  GCGGGGAGAGAGTGTGAATTC  1098

seq1: chr8_98726934_98727951
seq2: B6Ng01-036K09.g_67_1083

seq1  GAATTCCTTAACAAGTTGATATCTAATGTCACTCATATCAAAATTTAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAACAAGTTGATATCTAATGTCACTCATATCAAAATTTAAGA  50

seq1  GAAACAAAGATGGCTGTTTCTGGCTAAGAGGGAGCAGATTTGCCCATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAAGATGGCTGTTTCTGGCTAAGAGGGAGCAGATTTGCCCATTTG  100

seq1  CCTGCAAGATACTGAACATCAATCAACAATGACTACCCAGAGATGACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAAGATACTGAACATCAATCAACAATGACTACCCAGAGATGACAAA  150

seq1  GAAATCGGATGGATTATCAACTTTTCAAACAGCTTAAGGGAAACCAAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCGGATGGATTATCAACTTTTCAAACAGCTTAAGGGAAACCAAGGT  200

seq1  GCAGCCTGCAGTTAAAGAAACATAGCGGAAGGTACAAGGAGACCAATACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTGCAGTTAAAGAAACATAGCGGAAGGTACAAGGAGACCAATACT  250

seq1  AAGTGTGGCAGAAGAGGAAGCTACACAAAGAAAGAACTCCAATGGTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGGCAGAAGAGGAAGCTACACAAAGAAAGAACTCCAATGGTCTCA  300

seq1  AGAGAGTCCTGCTCAGATATTCAGCCAAGTACTGAAAAGAGGAAAATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTCCTGCTCAGATATTCAGCCAAGTACTGAAAAGAGGAAAATACA  350

seq1  TGAGAGGAAGTTATCTGCCATGAGGAACACAGCTATGTGAAGAGATGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGAAGTTATCTGCCATGAGGAACACAGCTATGTGAAGAGATGAGG  400

seq1  TTACAGGGCTAGAAATACTCTGTACCACTGAGCAGACTTAAAAGGCACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGGCTAGAAATACTCTGTACCACTGAGCAGACTTAAAAGGCACAC  450

seq1  GGCTCCTGGCGTGTCTGGCAGAGTTCATGGAAGGATCTTGCTTTAGGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTGGCGTGTCTGGCAGAGTTCATGGAAGGATCTTGCTTTAGGATT  500

seq1  GGGGAATAACCATCTCTGGATGGAGCACTGTCAGAGAGTCACGGAAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATAACCATCTCTGGATGGAGCACTGTCAGAGAGTCACGGAAGGAG  550

seq1  TAGCCGCAGAAAGATGCAGAAAGCCCACACTG-TTTCAAGTCATTTAGTT  599
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAGCCGCAGAAAGATGCAGAAAGCCCACACTGTTTTCAAGTCATTTAGTT  600

seq1  GCATCCAAGAACAAAGCTCAACAG-TACTTATGAGGATACACAAATACCC  648
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCATCCAAGAACAAAGCTCAACAGTTACTTATGAGGATACACAAATACCC  650

seq1  AACTG-TCAGCATGGTAAACTCTCAAGCTCTGGTGTTCAGCACACACTTA  697
      ||||| |||||||||| |||||||||||||||| ||||||||||||||||
seq2  AACTGTTCAGCATGGT-AACTCTCAAGCTCTGGGGTTCAGCACACACTTA  699

seq1  A-GAGGCAGGCAAATAATAAGGAAAACACTA-TTCCTAAT-GAGGAATCA  744
      | |||||||||||||| |||||||| ||||| |||||||| |||||||||
seq2  AGGAGGCAGGCAAATATTAAGGAAACCACTATTTCCTAATGGAGGAATCA  749

seq1  ATAAA-TCAAAATCAAATAGGAACT-GGTAGATCTTAAGATGATCAGACA  792
      ||||| ||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATAAATTCAAAATCAAATAGGAACTGGGTAGATCTTAAGATGATCAGACA  799

seq1  CTGG-CAATAAGACAGTTTT-ATTGT-GTCCTATG-TGTTATGAAAATTA  838
      |||| |||| |||||||||| ||||| |||||||| ||||||||||| ||
seq2  CTGGCCAATTAGACAGTTTTAATTGTGGTCCTATGTTGTTATGAAAA-TA  848

seq1  AACATACCAGTAGCCAT-GTGTGTGTGTGTGTGTAAACTGAT-GAATTGA  886
      ||||||||||||||||| |||||||||||||||| ||||||| || ||||
seq2  AACATACCAGTAGCCATGGTGTGTGTGTGTGTGT-AACTGATGGATTTGA  897

seq1  TTCTAAAATCTATGTGGAAAGAGAAAAAAAAAACAACAACAACAAAACTC  936
      |||||||||| |||||||||||||||||||| |||||    || ||||||
seq2  TTCTAAAATC-ATGTGGAAAGAGAAAAAAAACACAAC----ACTAAACTC  942

seq1  TAATAACCCAAACTTCTTTGACAAAGAATGAAGTTACAGGGCTTACATGA  986
      | |||| ||||  |||||||||||   ||| ||||||||||||||| |||
seq2  TTATAA-CCAACTTTCTTTGACAA--GATGGAGTTACAGGGCTTAC-TGA  988

seq1  CCTGGCTTTGAGACAACAAGCTGAATAATGAG  1018
      ||| ||||||| || || |||||||| |||||
seq2  CCT-GCTTTGAAACGAC-AGCTGAAT-ATGAG  1017