BAC Information

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BAC

Clone NameB6Ng01-038I09
Chromosome13 (Build37)8 (Build37)
Map Location 79,430,475 - 79,431,58659,664,618 - 59,665,176
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042683, LOC622365, LOC100043052, EG666883
Downstream geneLOC666925, LOC382780, EG666933
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038I09.bB6Ng01-038I09.g
ACCDH866060DH866061
length1,0881,033
definitionDH866060|Mus musculus domesticus DNA, BAC clone: B6Ng01-038I09, 5' end.DH866061|Mus musculus domesticus DNA, BAC clone: B6Ng01-038I09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,430,475 - 79,431,586)(59,664,618 - 59,665,176)
sequence
gaattctggcagtggtaagcacaaagagctagaagaaaaaaaaagttagt
ggagggacagcagcataatggagtcactctcagacacatatacatgagat
aaaaaccttagtggcaggaactttgccagcatgctttgccagttcggagg
tacagataatcctacaacagcatcccacttccaatcttcacaattcccac
tattcaaggcaagatttaaaaccttaatctagaaacgttactttcaagta
gctgagaaaaatcagtgtcttactctgtctacaaattcagggattttttc
cctcttattggatattttctttatttgcatttcaaatgttatcccctttc
ccacttctccctcctgacacttcctatcccatcctccctcctgcttctat
aaggctgctcctccacccacctattcccaccttcccaccctgacataccc
ctacattggggcatagagcattcatagacccaagagcctctcctcctatt
gatgcctgacaaggccatcttctgatacataggtggctggagccatgggt
ggatccatgtatactccttggttggtggtttaatccctgggagctctggg
tggtctggttggttgatattgttgttcttcctatggggttacaaacccct
tcagctccttcagtcctttctctaagtcctgcactggggaccccatgctc
cagttcagctttaacaactgtccatctttgcttctaaactattttgccat
gcctcaatcatatgagtgtgaatatcttaaccattgaagcaagatttttc
aaaactctgaatctattttgcttagaagatagcctaaaatattaaattgg
tttcaaattcaacaaaggatggctgacactctggctgagttttcaatttt
atgaaacattgtgagaaaaagaaaaagaaaaaaggcatcagacaaatttc
attaaattttagaaacttaaatttctcaacttttctgaataaaatatgcc
actgaatcttaatgccaataaagctcaattattgtatgtaaacatgtgcc
aaatgttttacttctatagttattccctagcaactccc
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacctgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagtttctttcttgtttccacttggttgatttcacccctgagtttgatt
atttcctgccgtctactcctcttgggtgaatttgcttccttttttctaga
gcttttagatgtgttgtcaagctgctagtatgtgctctctcccgtttttc
ttgaagcactcataagctatgagtcctctaaaatgctttcatgtgtccca
aaggttgggtacgtgtggcttctttcataaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_79430475_79431586
seq2: B6Ng01-038I09.b_40_1127

seq1  GAATTCTGGCAGTGGTAAGCACAAAGAGCTAGAAGAAAAAAAAAGTTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCAGTGGTAAGCACAAAGAGCTAGAAGAAAAAAAAAGTTAGT  50

seq1  GGAGGGACAGCAGCATAATGGAGTCACTCTCAGACACATATACATGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGACAGCAGCATAATGGAGTCACTCTCAGACACATATACATGAGAT  100

seq1  AAAAACCTTAGTGGCAGGAACTTTGCCAGCATGCTTTGCCAGTTCGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCTTAGTGGCAGGAACTTTGCCAGCATGCTTTGCCAGTTCGGAGG  150

seq1  TACAGATAATCCTACAACAGCATCCCACTTCCAATCTTCACAATTCCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATAATCCTACAACAGCATCCCACTTCCAATCTTCACAATTCCCAC  200

seq1  TATTCAAGGCAAGATTTAAAACCTTAATCTAGAAACGTTACTTTCAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAGGCAAGATTTAAAACCTTAATCTAGAAACGTTACTTTCAAGTA  250

seq1  GCTGAGAAAAATCAGTGTCTTACTCTGTCTACAAATTCAGGGATTTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAAAAATCAGTGTCTTACTCTGTCTACAAATTCAGGGATTTTTTC  300

seq1  CCTCTTATTGGATATTTTCTTTATTTGCATTTCAAATGTTATCCCCTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTATTGGATATTTTCTTTATTTGCATTTCAAATGTTATCCCCTTTC  350

seq1  CCACTTCTCCCTCCTGACACTTCCTATCCCATCCTCCCTCCTGCTTCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCTCCCTCCTGACACTTCCTATCCCATCCTCCCTCCTGCTTCTAT  400

seq1  AAGGCTGCTCCTCCACCCACCTATTCCCACCTTCCCACCCTGACATACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGCTCCTCCACCCACCTATTCCCACCTTCCCACCCTGACATACCC  450

seq1  CTACATTGGGGCATAGAGCATTCATAGACCCAAGAGCCTCTCCTCCTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTGGGGCATAGAGCATTCATAGACCCAAGAGCCTCTCCTCCTATT  500

seq1  GATGCCTGACAAGGCCATCTTCTGATACATAGGTGGCTGGAGCCATGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCTGACAAGGCCATCTTCTGATACATAGGTGGCTGGAGCCATGGGT  550

seq1  GGATCCATGTATACTCCTTGGTTGGTGGTTTAATCCCTGGGAGCTCTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCATGTATACTCCTTGGTTGGTGGTTTAATCCCTGGGAGCTCTGGG  600

seq1  TGGTCTGGTTGGTTGATATTGTTGTTCTTCCTATGGGGTTACAAACCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGGTTGGTTGATATTGTTGTTCTTCCTATGGGGTTACAAACCCCT  650

seq1  TCAGCTCCTTCAGTCCTTTCTCTAAGTCCTGCACTGGGGACCCCATGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCCTTCAGTCCTTTCTCTAAGTCCTGCACTGGGGACCCCATGCTC  700

seq1  CAGTTCAGCTTTAACAACTGTCCATCTTTGCTTCTAAACTATTTTGCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCAGCTTTAACAACTGTCCATCTTTGCTTCTAAACTATTTTGCCAT  750

seq1  GCCTCAATCATATGAGTGTGAATATCTTAACCATTGAAGCAAGATTTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAATCATATGAGTGTGAATATCTTAACCATTGAAGCAAGATTTTTC  800

seq1  AAAACTCTGAATCTATTTTGCTTAGAAGATAGCCTAAAATATTAAATTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCTGAATCTATTTTGCTTAGAAGATAGCCTAAAATATTAAATTGG  850

seq1  TTTCAAATTCAACAAAGGATGGCTGACACTCTGGCTGAGTTTTCAAATTT  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTCAAATTCAACAAAGGATGGCTGACACTCTGGCTGAGTTTTC-AATTT  899

seq1  TATGAAACATTGTGAAGAAAAAAGAAAAAAGAAAAAAAAGGCATCAGACA  950
      |||||||||||||||   ||||||||||   | |||||||||||||||| 
seq2  TATGAAACATTGTGA--GAAAAAGAAAA---AGAAAAAAGGCATCAGAC-  943

seq1  AAATTTCATTAAATTTTTAGAAAACTTAAATTTCTCAAACTTTTCTGAAA  1000
      ||||||||||||| |||||| ||||||||||||||| |||||||||||| 
seq2  AAATTTCATTAAA-TTTTAG-AAACTTAAATTTCTC-AACTTTTCTGAA-  989

seq1  TAAAAATAATTGCCAACTGAATCTTAATGCCAAATAAAGCTCAAATTATT  1050
        ||||||  |||| |||||||||||||||| |||||||||| |||||||
seq2  -TAAAATA--TGCC-ACTGAATCTTAATGCC-AATAAAGCTC-AATTATT  1033

seq1  GTATGTAAAACATGTGCCAAAATGTTTTACTTCTATTAAGTTTATTCCCA  1100
      |||||| ||||||||||| |||||||||||||||||  || |||||||| 
seq2  GTATGT-AAACATGTGCC-AAATGTTTTACTTCTAT--AG-TTATTCCC-  1077

seq1  TAGCAAACTCCC  1112
      |||| |||||||
seq2  TAGC-AACTCCC  1088

seq1: chr8_59664618_59665176
seq2: B6Ng01-038I09.g_554_1101 (reverse)

seq1  AGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATG  50
      ||||| ||||||  |||||||| |||||||| |||||||||||||| |||
seq2  AGTTT-ATGAAA--GAAGCCAC-ACGTACCC-AACCTTTGGGACAC-ATG  44

seq1  AAAGCATTTCTAAGAGGGAAACTCATAGC-TATGAGTGCCTTCAAGAAAA  99
      ||||||||  | |||||   ||||||||| |||||||| ||||||| |||
seq2  AAAGCATT--TTAGAGG---ACTCATAGCTTATGAGTG-CTTCAAG-AAA  87

seq1  AACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTA  137

seq1  GAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAAT  199
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-AAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAAT  186

seq1  CAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAA--GAACTATTCA  247
      ||||||||||||||||||||||||||||||||||||||   |||||||||
seq2  CAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAAGAAACTATTCA  236

seq1  AAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAG  286

seq1  ATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATT  336

seq1  AACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAAT  386

seq1  CCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGG  436

seq1  AAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAG  486

seq1  TTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGA  547
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTGAATCAGGATCAGGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGA  536

seq1  AATAGAAGCAGT  559
      ||||||||||||
seq2  AATAGAAGCAGT  548