BAC Information

Click to search

BAC

Clone NameB6Ng01-038J11
Chromosome8 (Build37)
Map Location 50,695,589 - 50,900,014
singlet/doubletdoublet
Overlap genenone
Upstream geneOdz3, 2900073C17Rik, LOC100039866, 4930555F03Rik
Downstream geneLOC100039919, EG667495, LOC100039954, LOC100039966
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038J11.bB6Ng01-038J11.g
ACCDH866110DH866111
length1,065194
definitionDH866110|Mus musculus domesticus DNA, BAC clone: B6Ng01-038J11, 5' end.DH866111|Mus musculus domesticus DNA, BAC clone: B6Ng01-038J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,695,589 - 50,696,658)(50,899,821 - 50,900,014)
sequence
gaattcttgcccgctgctaccgttagggtcttctgagcaaacttctggca
aaggccttagagtgagtgataaaaattcagtgaagatgatgctgaacatg
cactctgcttctaccatttgtccctgtggttggcatggattaataggcta
aggcaggagatgggcatagcacaaattgaaaataatggagcattttgaac
caaaggaataagagtgtaataactatagtatgtgggaaggtaatggtgaa
gaggctggaaagaggcacaaggcaggtagatacagaccatagcagcttta
ggacaattagggctcaacacctaagactctaatgaagatgagactcaccc
gaggtttatgactttacagtaacttcatagtaatgtttacagcttggttt
gcatgtgacactcatacacatttatgaaggaggtactcattaacaggtca
ggagaaatggtgtaaacattcaacaagaaaaaaatgcaattatcatgcaa
attgtaaactcattgtaaataaaatacaactcattttattttcactacag
tggggttctatagatttggtagttctctcttagatacactcattcaaagt
tcagaatggagatctgactgccaatcattgagcaaacatagccaggacac
atatccagtgtctatggagtaggccttagtgcgccaaatacctttagctt
tgggaaaatataatagtaaaggaaagataaacagaaataagtggtaaata
gaaattgacacttattcaaggacaatgtgcccctttgttaattgtttcat
cagaatgaaaaatgtggtgtggggatagaaaaagtctcgaatctgtcagt
gctgtgactgcccaatacaaggaccatggaccatggaccatcagagctaa
aggctgacttcacgtggaatgaatctgtagagcttctgccttgctgagtt
ttttttctcctttttcatgataaataaactgaccaaaacaactgaaggga
gagagatttgctgggactcatataaattcatacatacagtccatcacaat
ggctgaagtaaggct
tcagcctgttccacagtagtcagaatgatacatttaaaataggttatgta
attttcttctggactttctgtgggtccccataaccaatggatgaattgat
agaaagaaaagaaggaagagaggaaggaaggaaggaaggaaggaaggaag
gaaggaaggaaggaaggaaggaaggaaggaagggaaagaaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_50695589_50696658
seq2: B6Ng01-038J11.b_42_1106

seq1  GAATTCTTGCCCGCTGCTACCGTTAGGGTCTTCTGAGCAAACTTCTGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCCCGCTGCTACCGTTAGGGTCTTCTGAGCAAACTTCTGGCA  50

seq1  AAGGCCTTAGAGTGAGTGATAAAAATTCAGTGAAGATGATGCTGAACATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTTAGAGTGAGTGATAAAAATTCAGTGAAGATGATGCTGAACATG  100

seq1  CACTCTGCTTCTACCATTTGTCCCTGTGGTTGGCATGGATTAATAGGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGCTTCTACCATTTGTCCCTGTGGTTGGCATGGATTAATAGGCTA  150

seq1  AGGCAGGAGATGGGCATAGCACAAATTGAAAATAATGGAGCATTTTGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGAGATGGGCATAGCACAAATTGAAAATAATGGAGCATTTTGAAC  200

seq1  CAAAGGAATAAGAGTGTAATAACTATAGTATGTGGGAAGGTAATGGTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAATAAGAGTGTAATAACTATAGTATGTGGGAAGGTAATGGTGAA  250

seq1  GAGGCTGGAAAGAGGCACAAGGCAGGTAGATACAGACCATAGCAGCTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGGAAAGAGGCACAAGGCAGGTAGATACAGACCATAGCAGCTTTA  300

seq1  GGACAATTAGGGCTCAACACCTAAGACTCTAATGAAGATGAGACTCACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAATTAGGGCTCAACACCTAAGACTCTAATGAAGATGAGACTCACCC  350

seq1  GAGGTTTATGACTTTACAGTAACTTCATAGTAATGTTTACAGCTTGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTATGACTTTACAGTAACTTCATAGTAATGTTTACAGCTTGGTTT  400

seq1  GCATGTGACACTCATACACATTTATGAAGGAGGTACTCATTAACAGGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGACACTCATACACATTTATGAAGGAGGTACTCATTAACAGGTCA  450

seq1  GGAGAAATGGTGTAAACATTCAACAAGAAAAAAATGCAATTATCATGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAATGGTGTAAACATTCAACAAGAAAAAAATGCAATTATCATGCAA  500

seq1  ATTGTAAACTCATTGTAAATAAAATACAACTCATTTTATTTTCACTACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAAACTCATTGTAAATAAAATACAACTCATTTTATTTTCACTACAG  550

seq1  TGGGGTTCTATAGATTTGGTAGTTCTCTCTTAGATACACTCATTCAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTCTATAGATTTGGTAGTTCTCTCTTAGATACACTCATTCAAAGT  600

seq1  TCAGAATGGAGATCTGACTGCCAATCATTGAGCAAACATAGCCAGGACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATGGAGATCTGACTGCCAATCATTGAGCAAACATAGCCAGGACAC  650

seq1  ATATCCAGTGTCTATGGAGTAGGCCTTAGTGCGCCAAATACCTTTAGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAGTGTCTATGGAGTAGGCCTTAGTGCGCCAAATACCTTTAGCTT  700

seq1  TGGGAAAATATAATAGTAAAGGAAAGATAAACAGAAATAAGTGGTAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAATATAATAGTAAAGGAAAGATAAACAGAAATAAGTGGTAAATA  750

seq1  GAAATTGACACTTATTCAAGGACAATGTGCCCCTTTGTTAATTGTTTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGACACTTATTCAAGGACAATGTGCCCCTTTGTTAATTGTTTCAT  800

seq1  CAGAATGAAAAATGTGGTGTGGGGATAGAAAAAGTCTCGAATCTGTCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGAAAAATGTGGTGTGGGGATAGAAAAAGTCTCGAATCTGTCAGT  850

seq1  GCTGTGACTGCCCAATACAAGGACCATGGACCATGGACCATCAGAGCTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGACTGCCCAATACAAGGACCATGGACCATGGACCATCAGAGCTAA  900

seq1  AGGCTGACTTCACGTGGAATGAATCTGTAGAGCTTCTGCCTTGCTGAGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGACTTCACGTGGAATGAATCTGTAGAGCTTCTGCCTTGCTGAGTT  950

seq1  TTTTTTCTCCTTTTTTCTATGATAAAATAAACTGACCAAAACAACTGAAG  1000
      |||||||||||||||   ||||| ||||||||||||||||||||||||||
seq2  TTTTTTCTCCTTTTT--CATGAT-AAATAAACTGACCAAAACAACTGAAG  997

seq1  GGAGAGAGGATTTGCTGTGACTCACAGTAAATACATACATACAGTCCATC  1050
      ||||||| ||||||||| |||||| | ||||| |||||||||||||||||
seq2  GGAGAGA-GATTTGCTGGGACTCATA-TAAATTCATACATACAGTCCATC  1045

seq1  ACAAT-GCTGAAGTCAAGGCT  1070
      ||||| |||||||| ||||||
seq2  ACAATGGCTGAAGT-AAGGCT  1065

seq1: chr8_50899821_50900014
seq2: B6Ng01-038J11.g_73_266 (reverse)

seq1  TTCCTTCTTTCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTTTCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT  50

seq1  TCCTTCCTTCCTTCCTTCCTTCCTCTCTTCCTTCTTTTCTTTCTATCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTTCCTTCCTTCCTTCCTCTCTTCCTTCTTTTCTTTCTATCAAT  100

seq1  TCATCCATTGGTTATGGGGACCCACAGAAAGTCCAGAAGAAAATTACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCATTGGTTATGGGGACCCACAGAAAGTCCAGAAGAAAATTACATA  150

seq1  ACCTATTTTAAATGTATCATTCTGACTACTGTGGAACAGGCTGA  194
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTTTAAATGTATCATTCTGACTACTGTGGAACAGGCTGA  194