BAC Information

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BAC

Clone NameB6Ng01-039A06
Chromosome8 (Build37)16 (Build37)
Map Location 107,433,958 - 107,434,19660,775,943 - 60,776,480
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760
Downstream geneCes5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039A06.bB6Ng01-039A06.g
ACCDH866408DH866409
length780874
definitionDH866408|Mus musculus domesticus DNA, BAC clone: B6Ng01-039A06, 5' end.DH866409|Mus musculus domesticus DNA, BAC clone: B6Ng01-039A06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(107,433,958 - 107,434,196)(60,775,943 - 60,776,480)
sequence
gaattccttttctggtccagtctatttggagttctgtaggcttcttgtat
gtttatgggcatgtcattctttaggtttgggaagttttcttctataattt
tgttgaatatatttgctggccctttaagttgaaaatcttcattctcatca
actcctattatctgtaggtttggttttctcattgtgtcctggatttcctg
gatgttttgagttaggatcgttttgcattttgtattttctttgattgatg
tgccgatgttctctatggaatcttctgcacctgagattctctcttccacc
tcttgtattctgttgcttatgctcgcgtctatggttccagatttctttcc
tagggtttctatctccagtgttgcctcactttgggttttctttattgtgt
ctaccttgctttttaggtctagtatggttttgttcatttccatcacctgt
ttggatgtgttttcctgtttttctataaggacttctacctgtttggatgt
gttttcctgcttttctttaaggacttgtaactctttagcagtgctctcct
gtatttctttaagtgagttattaaagtccttctttatgtcctctaccatc
atcatgagatatgcttttaaatccgggtctagcttttcggttgtgttggg
gtgcccaggactaggtggcgtgggagtgctgcgttctgatgatggtgagt
ggtctttgatttctgttagtaggattcttacatttgcctttcgccatctt
ggtattctctggagctgtgcaggatacact
gaattcctgatttttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatttggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccttggaataaaacctacttggacaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttgggt
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggatttttgtccctgtgccctttagtgagtctagctaagggtttatct
atcttgttgattttctcaaagtaccaactccctcgtttggtaattctttg
aatagttcttcttgttttcacttggtgaattcaccccctgagtttgatta
tttcctgccgtctactcctctttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_107433958_107434196
seq2: B6Ng01-039A06.b_585_825 (reverse)

seq1  AGTGTATCCTGCACAGCTCCAGAGAATACC-AGATGGCGAAAGGCAAACG  49
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  AGTGTATCCTGCACAGCTCCAGAGAATACCAAGATGGCGAAAGGCAAATG  50

seq1  TAAGAATCCTACTAACAGAAA-CCAAGACCACTCACCATCATCAGAACAC  98
      ||||||||||||||||||||| | |||||||||||||||||||||||| |
seq2  TAAGAATCCTACTAACAGAAATCAAAGACCACTCACCATCATCAGAACGC  100

seq1  AGCACTCCCACCCCACCTAGTCCTGGGCACCCCAACACAACCGAAAAGCT  148
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCCCACGCCACCTAGTCCTGGGCACCCCAACACAACCGAAAAGCT  150

seq1  AGACACGGATTTAAAAGCATATCTCATGATGATGGTAGAGGACATCAAGA  198
      |||| |||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGACCCGGATTTAAAAGCATATCTCATGATGATGGTAGAGGACATAAAGA  200

seq1  AGAACTTTAATAACTCACTTAAAGAAATGCAGGACAGCACT  239
      || ||||||||||||||||||||||||| ||||| ||||||
seq2  AGGACTTTAATAACTCACTTAAAGAAATACAGGAGAGCACT  241

seq1: chr16_60775943_60776480
seq2: B6Ng01-039A06.g_397_935 (reverse)

seq1  CCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCA-GGGGTGAAATCAA  49
      | |||||||||||||||||||||||||||||||||| |||||||| || |
seq2  CAAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGGTGAATTC-A  49

seq1  CCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGA-GGAGT  98
      ||||||| |||||||||||||||||||||||||| ||||||||| |||||
seq2  CCAAGTGAAAACAAGAAGAACTATTCAAAGAATT-ACCAAACGAGGGAGT  98

seq1  TGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCAC  148
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCAC  148

seq1  TAAAGGGCACAGGGAC-AAAATCCTAATTAACAAAATCAGAAATGAAAAG  197
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAAAGGGCACAGGGACAAAAATCCTAATTAACAAAATCAGAAATGAAAAG  198

seq1  GGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTT  248

seq1  CTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACA  298

seq1  AATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGAC  348

seq1  CATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAG  398

seq1  TCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCT  448

seq1  ATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCAC  498

seq1  AAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGA  538
      |||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGA  539