BAC Information

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BAC

Clone NameB6Ng01-039L21
Chromosome8 (Build37)
Map Location 10,911,898 - 11,059,665
singlet/doubletdoublet
Overlap geneLOC665306, Irs2
Upstream geneLig4, Abhd13, Tnfsf13b, Myo16, LOC100040008, LOC384782, LOC100040507
Downstream geneCol4a1, Col4a2, Rab20, 0710008K08Rik, Cars2, Ing1, Ankrd10, 1700016D06Rik, EG665271, LOC665363, LOC624710, LOC665373, Arhgef7, 1700018L24Rik, LOC100040155
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039L21.bB6Ng01-039L21.g
ACCDH866923DH866924
length1,1471,076
definitionDH866923|Mus musculus domesticus DNA, BAC clone: B6Ng01-039L21, 5' end.DH866924|Mus musculus domesticus DNA, BAC clone: B6Ng01-039L21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,911,898 - 10,913,046)(11,058,590 - 11,059,665)
sequence
gaattcagaaagctgagacaggaggattcctataagcaataagctcagcc
caggccaaacagtgaaaccatgtctgagaagcaatgtcttcatgctcata
gatcaggaaagcctacaagggcagcggcaggcttccttctaagaaggcag
atcacccaggaaagtcagagctgggtaggctacaaggtggtgtcgacagt
gggaaaatcttctgatgggctgcgttccttggtttcccaggttgccatcc
tgactgaggggtgtgctccctgaggtgtgactcagcagaaggctggaggc
tgctgctggatatggagctctcaggggttcccaggctagactctttattc
tggcttcctaactgaagcaccaggcaaactctgagcttcgtggaagacat
tctccacgtctcaccccagaaggcagccgtgtctgaaagacatgcgaaat
gcagctcagtagctctctggccagcagagaaaacacccaccaagtgcaaa
gtgtgtgtgtagttaggagacccagagtccagaagcacgagatatagatg
acttcaatgcctttacaggcatcagtgccccctcaacacttccagctccc
cagaggggccaccagccagctgcctcccccactctcacattgcttttctc
catctctgtgcactgaggtgatcttaacatgtctggacactgtgacagag
caaagaaggccatgtgctaggtctaggagcaggatcgagatggcagaact
ccatttgcttccccgaggtcaggcacttctgtgtttgatgattttaatct
gttctcccatgtgagctcaactggcagacaccccatgaccctcttttgcc
tggcactcacctcctggactctgtgtcccctcctactggctgctgttttt
cttctttggcctctgttactcctttttaaagatgcacattagagaaagag
ctgtccgttttccctggtgacatcagaagcaagtggtctttagagtgctc
atccatgagacagcaggaatatgggacagtgacccagattccaggccacg
ctgcaggatctaaaattacacttccaagatcctcgaatctattgcaaagc
tttgtttaagttatagaaagagacttcttccagtttctctttaaaca
gaattctagggtacgttaccagccgcctgctcttccttccttgggaagaa
acacggtgtttcctggaaggatgaacggctcagtgctgacgtgctatgag
aaatgcaggctgcagccaggactactctccttccaaagtgagcaattcaa
ttagctcactcaattaaaatgatggacaacccccagatgttgcaggatct
ggtttcctctccttccatctcaccttgcagagtatggaaatgacccacag
ttgcaccaaggtctatgtgattatttgtgagagccagggcttccagcttt
ttccatgagactttagaaaactccctcaagccagtatgcccacttctcct
atctgagcatagcaacagagagcccacctgagacaacagcacacacggaa
tctatcttccccttctctaggtcacaagcggagcacacattttatttgag
tctccagctcagagaagattctctgtggaactgagtaccccacagagagg
gtggagggtgagtgtgtgtgcccctttcctctccagttagagtttcgatg
ggtagttgtcctggagatgaccacctacacagaactgtgatttgccatgt
aactcagaaactaaccaatatcaactgacttggaataaagatgtgcagaa
gatatgcaaatctgtatgacatccctgtgtggccagcttggggtataagt
tagcaagactaacagtttagtatgggtgtatgatcaagaatcatcgtctc
tgtgtgtcatggttattactatcaaaactacattgactgacttcgccttg
tcgctacacgaagagccttcaaaggaaaacgtccatctgattcttcctag
aagctcaagaagaggtcatatgagataccaggtgggacctgactattttt
atggggaggaacggagatccaagctgcagtgtttaaacagtgcttgcctc
aatgacactatacactcagccgctgtattttcttcagccgctgagcaaga
tgccctgtaccaccaatttctgagtgcttgtaacttcccacccacctgct
tagtaatagccctgaggtacctcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_10911898_10913046
seq2: B6Ng01-039L21.b_42_1188

seq1  GAATTCAGAAAGCTGAGACAGGAGGATTCCTATAAGCAATAAGCTCAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAGCTGAGACAGGAGGATTCCTATAAGCAATAAGCTCAGCC  50

seq1  CAGGCCAAACAGTGAAACCATGTCTGAGAAGCAATGTCTTCATGCTCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCAAACAGTGAAACCATGTCTGAGAAGCAATGTCTTCATGCTCATA  100

seq1  GATCAGGAAAGCCTACAAGGGCAGCGGCAGGCTTCCTTCTAAGAAGGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGAAAGCCTACAAGGGCAGCGGCAGGCTTCCTTCTAAGAAGGCAG  150

seq1  ATCACCCAGGAAAGTCAGAGCTGGGTAGGCTACAAGGTGGTGTCGACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCCAGGAAAGTCAGAGCTGGGTAGGCTACAAGGTGGTGTCGACAGT  200

seq1  GGGAAAATCTTCTGATGGGCTGCGTTCCTTGGTTTCCCAGGTTGCCATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAATCTTCTGATGGGCTGCGTTCCTTGGTTTCCCAGGTTGCCATCC  250

seq1  TGACTGAGGGGTGTGCTCCCTGAGGTGTGACTCAGCAGAAGGCTGGAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAGGGGTGTGCTCCCTGAGGTGTGACTCAGCAGAAGGCTGGAGGC  300

seq1  TGCTGCTGGATATGGAGCTCTCAGGGGTTCCCAGGCTAGACTCTTTATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTGGATATGGAGCTCTCAGGGGTTCCCAGGCTAGACTCTTTATTC  350

seq1  TGGCTTCCTAACTGAAGCACCAGGCAAACTCTGAGCTTCGTGGAAGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCCTAACTGAAGCACCAGGCAAACTCTGAGCTTCGTGGAAGACAT  400

seq1  TCTCCACGTCTCACCCCAGAAGGCAGCCGTGTCTGAAAGACATGCGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACGTCTCACCCCAGAAGGCAGCCGTGTCTGAAAGACATGCGAAAT  450

seq1  GCAGCTCAGTAGCTCTCTGGCCAGCAGAGAAAACACCCACCAAGTGCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTCAGTAGCTCTCTGGCCAGCAGAGAAAACACCCACCAAGTGCAAA  500

seq1  GTGTGTGTGTAGTTAGGAGACCCAGAGTCCAGAAGCACGAGATATAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTAGTTAGGAGACCCAGAGTCCAGAAGCACGAGATATAGATG  550

seq1  ACTTCAATGCCTTTACAGGCATCAGTGCCCCCTCAACACTTCCAGCTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAATGCCTTTACAGGCATCAGTGCCCCCTCAACACTTCCAGCTCCC  600

seq1  CAGAGGGGCCACCAGCCAGCTGCCTCCCCCACTCTCACATTGCTTTTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGGCCACCAGCCAGCTGCCTCCCCCACTCTCACATTGCTTTTCTC  650

seq1  CATCTCTGTGCACTGAGGTGATCTTAACATGTCTGGACACTGTGACAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTGTGCACTGAGGTGATCTTAACATGTCTGGACACTGTGACAGAG  700

seq1  CAAAGAAGGCCATGTGCTAGGTCTAGGAGCAGGATCGAGATGGCAGAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAGGCCATGTGCTAGGTCTAGGAGCAGGATCGAGATGGCAGAACT  750

seq1  CCATTTGCTTCCCCGAGGTCAGGCACTTCTGTGTTTGATGATTTTAATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGCTTCCCCGAGGTCAGGCACTTCTGTGTTTGATGATTTTAATCT  800

seq1  GTTCTCCCATGTGAGCTCAACTGGCAGACACCCCATGACCCTCTTTTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCCCATGTGAGCTCAACTGGCAGACACCCCATGACCCTCTTTTGCC  850

seq1  TGGCACTCACCTCCTGGACTCTGTGTCCCCTCCTACTGGCTGCTGTTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTCACCTCCTGGACTCTGTGTCCCCTCCTACTGGCTGCTGTTTTT  900

seq1  CTTCTTTGGCCTCTGTTACTCCTTTTTAAAGATGCACATTAGAGAAAAGA  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTCTTTGGCCTCTGTTACTCCTTTTTAAAGATGCACATTAGAG-AAAGA  949

seq1  GCTGTCCGTTTTCCCTGGTGACATCAGAAGCAAGTGGTCTTTAGAGTGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCGTTTTCCCTGGTGACATCAGAAGCAAGTGGTCTTTAGAGTGCT  999

seq1  CATCCATGAGACAGCAGGAATATGGGACAGTGACCCAGATTCCAGGCCAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATGAGACAGCAGGAATATGGGACAGTGACCCAGATTCCAGGCCAC  1049

seq1  GCTGCAGGAATCTAAATATTACACTTCCAAAGATCCCCGAATCTAGTGCA  1100
      |||||||| ||||||| ||||||||||| ||||||| |||||||| ||||
seq2  GCTGCAGG-ATCTAAA-ATTACACTTCC-AAGATCCTCGAATCTATTGCA  1096

seq1  AAGCTTTGGTTTATGTTATAG-AAGAGACTCCTCCAAG--TCTCTTTAAA  1147
      ||||||| ||||| ||||||| |||||||| || | ||  ||||||||||
seq2  AAGCTTT-GTTTAAGTTATAGAAAGAGACTTCTTCCAGTTTCTCTTTAAA  1145

seq1  CA  1149
      ||
seq2  CA  1147

seq1: chr8_11058590_11059665
seq2: B6Ng01-039L21.g_67_1140 (reverse)

seq1  TGAGGTACCTCAAGGGCTATTACTAAGCAGTGGGTTGGGAAGTTACCAAG  50
      ||||||||||| ||||||||||||||||||  || |||||||||| ||||
seq2  TGAGGTACCTC-AGGGCTATTACTAAGCAGGTGGGTGGGAAGTTA-CAAG  48

seq1  CACTCAAGAAATGGTGGTACAGGGCATCCTGCTCAGCGGCTG-AGGAAAT  99
      ||||||  || ||||||||||||||||| ||||||||||||| || ||||
seq2  CACTCAGAAATTGGTGGTACAGGGCATCTTGCTCAGCGGCTGAAGAAAAT  98

seq1  ACAGCGGCTGAGTGGTATAGTGTCATTGAGGCAAGCACTGTTTAAACACT  149
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACAGCGGCTGAGT-GTATAGTGTCATTGAGGCAAGCACTGTTTAAACACT  147

seq1  GCAGCTTGGATCTCCGTTCCTCCCCATAAAAATAGTCAGGTCCCACCTGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTGGATCTCCGTTCCTCCCCATAAAAATAGTCAGGTCCCACCTGG  197

seq1  TATCTCATATGACCTCTTCTTGAGCTTCTAGGAAGAATCAGATGGACGTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCATATGACCTCTTCTTGAGCTTCTAGGAAGAATCAGATGGACGTT  247

seq1  TTCCTTTGAAGGCTCTTCGTGTAGCGACAAGGCGAAGTCAGTCAATGTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTGAAGGCTCTTCGTGTAGCGACAAGGCGAAGTCAGTCAATGTAG  297

seq1  TTTTGATAGTAATAACCATGACACACAGAGACGATGATTCTTGATCATAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATAGTAATAACCATGACACACAGAGACGATGATTCTTGATCATAC  347

seq1  ACCCATACTAAACTGTTAGTCTTGCTAACTTATACCCCAAGCTGGCCACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATACTAAACTGTTAGTCTTGCTAACTTATACCCCAAGCTGGCCACA  397

seq1  CAGGGATGTCATACAGATTTGCATATCTTCTGCACATCTTTATTCCAAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATGTCATACAGATTTGCATATCTTCTGCACATCTTTATTCCAAGT  447

seq1  CAGTTGATATTGGTTAGTTTCTGAGTTACATGGCAAATCACAGTTCTGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGATATTGGTTAGTTTCTGAGTTACATGGCAAATCACAGTTCTGTG  497

seq1  TAGGTGGTCATCTCCAGGACAACTACCCATCGAAACTCTAACTGGAGAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGGTCATCTCCAGGACAACTACCCATCGAAACTCTAACTGGAGAGG  547

seq1  AAAGGGGCACACACACTCACCCTCCACCCTCTCTGTGGGGTACTCAGTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGCACACACACTCACCCTCCACCCTCTCTGTGGGGTACTCAGTTC  597

seq1  CACAGAGAATCTTCTCTGAGCTGGAGACTCAAATAAAATGTGTGCTCCGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGAATCTTCTCTGAGCTGGAGACTCAAATAAAATGTGTGCTCCGC  647

seq1  TTGTGACCTAGAGAAGGGGAAGATAGATTCCGTGTGTGCTGTTGTCTCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACCTAGAGAAGGGGAAGATAGATTCCGTGTGTGCTGTTGTCTCAG  697

seq1  GTGGGCTCTCTGTTGCTATGCTCAGATAGGAGAAGTGGGCATACTGGCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTCTCTGTTGCTATGCTCAGATAGGAGAAGTGGGCATACTGGCTT  747

seq1  GAGGGAGTTTTCTAAAGTCTCATGGAAAAAGCTGGAAGCCCTGGCTCTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGTTTTCTAAAGTCTCATGGAAAAAGCTGGAAGCCCTGGCTCTCA  797

seq1  CAAATAATCACATAGACCTTGGTGCAACTGTGGGTCATTTCCATACTCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAATCACATAGACCTTGGTGCAACTGTGGGTCATTTCCATACTCTG  847

seq1  CAAGGTGAGATGGAAGGAGAGGAAACCAGATCCTGCAACATCTGGGGGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGAGATGGAAGGAGAGGAAACCAGATCCTGCAACATCTGGGGGTT  897

seq1  GTCCATCATTTTAATTGAGTGAGCTAATTGAATTGCTCACTTTGGAAGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATCATTTTAATTGAGTGAGCTAATTGAATTGCTCACTTTGGAAGGA  947

seq1  GAGTAGTCCTGGCTGCAGCCTGCATTTCTCATAGCACGTCAGCACTGAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGTCCTGGCTGCAGCCTGCATTTCTCATAGCACGTCAGCACTGAGC  997

seq1  CGTTCATCCTTCCAGGAAACACCGTGTTTCTTCCCAAGGAAGGAAGAGCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCATCCTTCCAGGAAACACCGTGTTTCTTCCCAAGGAAGGAAGAGCA  1047

seq1  GGCGGCTGGTAACGTACCCTAGAATTC  1076
      |||||||||||||||||||||||||||
seq2  GGCGGCTGGTAACGTACCCTAGAATTC  1074