BAC Information

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BAC

Clone NameB6Ng01-039P21
Chromosome8 (Build37)
Map Location 103,157,242 - 103,316,477
singlet/doubletdoublet
Overlap geneLOC384895
Upstream geneLOC667531, LOC100042069, LOC436054, LOC100042078, LOC100042086, LOC100042092
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039P21.bB6Ng01-039P21.g
ACCDH867097DH867098
length1,1231,151
definitionDH867097|Mus musculus domesticus DNA, BAC clone: B6Ng01-039P21, 5' end.DH867098|Mus musculus domesticus DNA, BAC clone: B6Ng01-039P21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,315,362 - 103,316,477)(103,157,242 - 103,158,433)
sequence
gaattcttagcctttgctgctgtaacacagtagcttcctttctctatagc
agtcccagcgtaaaccatttgccgaaagactcatggaaatggagattagt
aactatttcgggtgggaacgaaaattgaaataatagattatagattaagt
aagaaaaatgaaaaccagaaaaaccttacaagtgtttaaaataaatgaaa
taaacattaagtccaatcaatatatgaagaaaagattagtgagcaactat
aataaataggacaggcactaacgagcatcatcgaactagcaatagtaggt
ttaatggctcctgtattttagagagacagcaaagaatatgattatcagtc
cttggaagtacatgacatctgttattttatcatttccacttcatgaatac
aaagtccatcttgcaaaagagagagtatgtttgagaaaatcttgttttca
aattataaatacaaaggatcacaccttaggagaattatcacccttgatga
gtctgttctatggaagttaaaaaaagcaaaaacaaaaacaaacaaaacaa
aacaaaaaaacaaaacaaaacaaaagaaaaaacatcctataatgagtatt
ttcaaaccacgaggaatctcatactgtgttgccctacataggttacttct
gtgcattttgtgtacttttgctacagtatccacatacactttattccttc
tttttaaaacaaatttctggataataaaatataatgaatgtttgcatgga
aagtagtactttttttcatagatactttgcctatgtgtttctctgcgtgt
gtgtttatgtatgtgtgtgtgtgcacgtgtgtgcatatgtatattcagtg
ttgcatctgtctgtatttgtgtgtttctgccttagacattctcagatgat
acaagatgttaaaccccctgacaaaatttttagaaggaaattttcagaaa
ttactgctaaaataaatttagttcccaaatttagactagttaaaatcaag
ttcaagggatttaagcatagttcattctttctggatatcatccattcttg
tggactgctgggttgtttagaaacctaagggttatgttttctttcagaat
ggtgtgggaacggcatgccctta
gaattctttgatgctaaaacagaaaagtaaaagctaggtgtagggttaca
tgattctaatctcagcaatgtggaagctgaggcaggagactcacaagttc
aactccagtctgggcagcatagcaagagtaaggccaacaaaggctacata
acaacatcctgtctcaaacaaaaaagtagacaaataataaagtaggggaa
agtcaggaacctgttgatgtgattcaataaaacatgcaaatgtagaagaa
aatcaaacaaaggtttaaggagaaatatcattatcatgttccaggtcttc
ctacggtcgagagctgatcttgttagattaaaaggggaaaatgatacaga
gggggaaaaaaaaaacctggacgaatgtagacatccattaataatttaaa
caaaacaaaaacaaaatctgtctaggtaggattataagggaaatgtattg
acctaataaacctacagtgggtggagaaatagccagaagatccctttcaa
tgtcaggaagaagagatgagggcggtgctgaggctaagcacccttggaga
ggtgccagccagagcagccaaccaaaggaacataagtctaagaactagaa
acattattctgcaggacttggaccatgaagagaaggtgctatgggtctgt
agtcctgcagagattcaccattctgactcaagtttgctttcagtacataa
gaggcatttgtattaaaagactgactggagccaacaaagagaaaattctc
tagataaggctggggctattgctagctaaaggattatataggcaaaacct
acaaagtaacaattttgggaagccaaagtaactcatatcttctcccagag
caggcaagacttgatttagtaacatgtccaacagatgcctcagacgtgca
agcagcaggcagtttgtaaaaagcagactaaaccattagcctgtttatct
gtgacttttagaatagctgtggtactgaaatattttgcacattcagcatt
ttttagagtacctcacagtaccagagtgtcatctcagctactgacagggt
acatcagatagagtatttctcaggctttgcactaaacattttgttttcag
ctaaccaaatatgtatctctaaccaagttcaccatctcaggcacctgcta
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_103315362_103316477
seq2: B6Ng01-039P21.b_49_1171 (reverse)

seq1  TAAGTGCATG-CGTT-CCACA-CATTCTGTA--GAAACATAA-CCTTA-G  43
      |||| ||||| |||| ||||| ||||||| |   |||||||| ||||| |
seq2  TAAGGGCATGCCGTTCCCACACCATTCTGAAAGAAAACATAACCCTTAGG  50

seq1  TGTCTAAACAA-CCAGCAGTCCACAAGAATGGATGATATCCAG-AAGAAT  91
      | ||||||||| ||||||||||||||||||||||||||||||| ||||||
seq2  TTTCTAAACAACCCAGCAGTCCACAAGAATGGATGATATCCAGAAAGAAT  100

seq1  GAACTATTGCTTAAATTCCTTGAACTTTGATTTTAACTAGTCTAAATTTG  141
      |||||| ||||||||| |||||||| ||||||||||||||||||||||||
seq2  GAACTA-TGCTTAAATCCCTTGAAC-TTGATTTTAACTAGTCTAAATTTG  148

seq1  GGAACTAAATTTATTTTAGCAGTAATTTCTGAAAATTTCCTTCTAAAAAT  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTAAATTTATTTTAGCAGTAATTTCTGAAAATTTCCTTCTAAAAAT  198

seq1  TTTGTCAGGGGGTTTAACATCTTGTATCATCTGAGAATGTCTAAGGCAGA  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAGGGGGTTTAACATCTTGTATCATCTGAGAATGTCTAAGGCAGA  248

seq1  AACACACAAATACAGACAGATGCAACACTGAATATACATATGCACACACG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACAAATACAGACAGATGCAACACTGAATATACATATGCACACACG  298

seq1  TGCACACACACACATACATAAACACACACGCAGAGAAACACATAGGCAAA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACACACACATACATAAACACACACGCAGAGAAACACATAGGCAAA  348

seq1  GTATCTATGAAAAAAAGTACTACTTTCCATGCAAACATTCATTATATTTT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTATGAAAAAAAGTACTACTTTCCATGCAAACATTCATTATATTTT  398

seq1  ATTATCCAGAAATTTGTTTTAAAAAGAAGGAATAAAGTGTATGTGGATAC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCAGAAATTTGTTTTAAAAAGAAGGAATAAAGTGTATGTGGATAC  448

seq1  TGTAGCAAAAGTACACAAAATGCACAGAAGTAACCTATGTAGGGCAACAC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCAAAAGTACACAAAATGCACAGAAGTAACCTATGTAGGGCAACAC  498

seq1  AGTATGAGATTCCTCGTGGTTTGAAAATACTCATTATAGGATGTTTTTTC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGAGATTCCTCGTGGTTTGAAAATACTCATTATAGGATGTTTTTTC  548

seq1  TTTTGTTTTGTTTTGTTTTTTTGTTTTGTTTTGTTTGTTTTTGTTTTTGC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTTTTGTTTTTTTGTTTTGTTTTGTTTGTTTTTGTTTTTGC  598

seq1  TTTTTTTAACTTCCATAGAACAGACTCATCAAGGGTGATAATTCTCCTAA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAACTTCCATAGAACAGACTCATCAAGGGTGATAATTCTCCTAA  648

seq1  GGTGTGATCCTTTGTATTTATAATTTGAAAACAAGATTTTCTCAAACATA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGATCCTTTGTATTTATAATTTGAAAACAAGATTTTCTCAAACATA  698

seq1  CTCTCTCTTTTGCAAGATGGACTTTGTATTCATGAAGTGGAAATGATAAA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTTTTGCAAGATGGACTTTGTATTCATGAAGTGGAAATGATAAA  748

seq1  ATAACAGATGTCATGTACTTCCAAGGACTGATAATCATATTCTTTGCTGT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGATGTCATGTACTTCCAAGGACTGATAATCATATTCTTTGCTGT  798

seq1  CTCTCTAAAATACAGGAGCCATTAAACCTACTATTGCTAGTTCGATGATG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAAAATACAGGAGCCATTAAACCTACTATTGCTAGTTCGATGATG  848

seq1  CTCGTTAGTGCCTGTCCTATTTATTATAGTTGCTCACTAATCTTTTCTTC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTAGTGCCTGTCCTATTTATTATAGTTGCTCACTAATCTTTTCTTC  898

seq1  ATATATTGATTGGACTTAATGTTTATTTCATTTATTTTAAACACTTGTAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTGATTGGACTTAATGTTTATTTCATTTATTTTAAACACTTGTAA  948

seq1  GGTTTTTCTGGTTTTCATTTTTCTTACTTAATCTATAATCTATTATTTCA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTCTGGTTTTCATTTTTCTTACTTAATCTATAATCTATTATTTCA  998

seq1  ATTTTCGTTCCCACCCGAAATAGTTACTAATCTCCATTTCCATGAGTCTT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCGTTCCCACCCGAAATAGTTACTAATCTCCATTTCCATGAGTCTT  1048

seq1  TCGGCAAATGGTTTACGCTGGGACTGCTATAGAGAAAGGAAGCTACTGTG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCAAATGGTTTACGCTGGGACTGCTATAGAGAAAGGAAGCTACTGTG  1098

seq1  TTACAGCAGCAAAGGCTAAGAATTC  1116
      |||||||||||||||||||||||||
seq2  TTACAGCAGCAAAGGCTAAGAATTC  1123

seq1: chr8_103157242_103158433
seq2: B6Ng01-039P21.g_67_1217

seq1  GAATTCTTTGATGCTAAAACAGAAAAGTAAAAGCTAGGTGTAGGGTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGATGCTAAAACAGAAAAGTAAAAGCTAGGTGTAGGGTTACA  50

seq1  TGATTCTAATCTCAGCAATGTGGAAGCTGAGGCAGGAGACTCACAAGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTAATCTCAGCAATGTGGAAGCTGAGGCAGGAGACTCACAAGTTC  100

seq1  AACTCCAGTCTGGGCAGCATAGCAAGAGTAAGGCCAACAAAGGCTACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAGTCTGGGCAGCATAGCAAGAGTAAGGCCAACAAAGGCTACATA  150

seq1  ACAACATCCTGTCTCAAACAAAAAAGTAGACAAATAATAAAGTAGGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATCCTGTCTCAAACAAAAAAGTAGACAAATAATAAAGTAGGGGAA  200

seq1  AGTCAGGAACCTGTTGATGTGATTCAATAAAACATGCAAATGTAGAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGAACCTGTTGATGTGATTCAATAAAACATGCAAATGTAGAAGAA  250

seq1  AATCAAACAAAGGTTTAAGGAGAAATATCATTATCATGTTCCAGGTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAACAAAGGTTTAAGGAGAAATATCATTATCATGTTCCAGGTCTTC  300

seq1  CTACGGTCGAGAGCTGATCTTGTTAGATTAAAAGGGGAAAATGATACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGGTCGAGAGCTGATCTTGTTAGATTAAAAGGGGAAAATGATACAGA  350

seq1  GGGGGAAAAAAAAAACCTGGACGAATGTAGACATCCATTAATAATTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAAAAAAAAACCTGGACGAATGTAGACATCCATTAATAATTTAAA  400

seq1  CAAAACAAAAACAAAATCTGTCTAGGTAGGATTATAAGGGAAATGTATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAAACAAAATCTGTCTAGGTAGGATTATAAGGGAAATGTATTG  450

seq1  ACCTAATAAACCTACAGTGGGTGGAGAAATAGCCAGAAGATCCCTTTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAATAAACCTACAGTGGGTGGAGAAATAGCCAGAAGATCCCTTTCAA  500

seq1  TGTCAGGAAGAAGAGATGAGGGCGGTGCTGAGGCTAAGCACCCTTGGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGAAGAAGAGATGAGGGCGGTGCTGAGGCTAAGCACCCTTGGAGA  550

seq1  GGTGCCAGCCAGAGCAGCCAACCAAAGGAACATAAGTCTAAGAACTAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCAGCCAGAGCAGCCAACCAAAGGAACATAAGTCTAAGAACTAGAA  600

seq1  ACATTATTCTGCAGGACTTGGACCATGAAGAGAAGGTGCTATGGGTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATTCTGCAGGACTTGGACCATGAAGAGAAGGTGCTATGGGTCTGT  650

seq1  AGTCCTGCAGAGATTCACCATTCTGACTCAAGTTTGCTTTCAGTACATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGCAGAGATTCACCATTCTGACTCAAGTTTGCTTTCAGTACATAA  700

seq1  GAGGCATTTGTATTAAAAGACTGACTGGAGCCAACAAAGAGAAAATTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCATTTGTATTAAAAGACTGACTGGAGCCAACAAAGAGAAAATTCTC  750

seq1  TAGATAAGGCTGGGGCTATTGCTAGCTAAAGGATTATATAGGCAAAACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAAGGCTGGGGCTATTGCTAGCTAAAGGATTATATAGGCAAAACCT  800

seq1  ACAAAGTAACAATTTTGGGAAGCCAAAGTAACTCATATCTTCTCCCAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTAACAATTTTGGGAAGCCAAAGTAACTCATATCTTCTCCCAGAG  850

seq1  CAGGCAAGACTTGATTTAGTAACATGTCCAACAGATGCCTCAGACGTGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAGACTTGATTTAGTAACATGTCCAACAGATGCCTCAGACGTGCA  900

seq1  AGCAAGCAGGCAGTTTGTAAAAAGCAGAACTAAACCATTAGCCTGTTTAA  950
      ||| ||||||||||||||||||||||| |||||||||||||||||||| |
seq2  AGC-AGCAGGCAGTTTGTAAAAAGCAG-ACTAAACCATTAGCCTGTTT-A  947

seq1  TCTTGTGACTTTTTAGGAATAGCTGTGGTACTGAAATATTTTGCAACATT  1000
      || ||||||||||   |||||||||||||||||||||||||||| |||||
seq2  TC-TGTGACTTTT--AGAATAGCTGTGGTACTGAAATATTTTGC-ACATT  993

seq1  CAGCATTTTTTTAAGAGTACCTCAACAGTACCAGGAAGTGGTCCATCTCA  1050
      |||||||||||  |||||||||| ||||||||||  ||||   |||||||
seq2  CAGCATTTTTT--AGAGTACCTC-ACAGTACCAG--AGTG--TCATCTCA  1036

seq1  GGCTACCTGACAGGGTACATTCAAGATAGAGTAATTTCCTCAGGGCTTAT  1100
       |||| ||||||||||||||   ||||||||||  || |||| ||||| |
seq2  -GCTA-CTGACAGGGTACAT--CAGATAGAGTA--TTTCTCA-GGCTT-T  1078

seq1  GCAACCTAAAAACAATTTTGTTTTTACAAGCCTAGCACAATAAATGTATC  1150
      |||  |||||    |||||||||| |     |||  || | | |||||| 
seq2  GCA--CTAAA---CATTTTGTTTTCA----GCTA--ACCAAATATGTAT-  1116

seq1  CTCTAAACACAATGTTCACCATCTCAAAGGCAGCCCTGCTAG  1192
      |||||   || | ||||||||||||  |||||  ||||||||
seq2  CTCTA---ACCAAGTTCACCATCTC--AGGCA--CCTGCTAG  1151