BAC Information

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BAC

Clone NameB6Ng01-040D09
Chromosome8 (Build37)
Map Location 26,859,706 - 26,991,127
singlet/doubletdoublet
Overlap geneBag4, Lsm1, Star, Ash2l, Kcnu1
Upstream geneAdam5, Adam32, Adam9, Tm2d2, Htra4, Plekha2, LOC100042390, Tacc1, LOC670822, LOC100040998, Fgfr1, D030041N04Rik, LOC100042416, Whsc1l1, Ppapdc1
Downstream geneHgsnat, 4930444A02Rik, Fnta, Hook3, 1700047A11Rik, Rnf170, Thap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040D09.bB6Ng01-040D09.g
ACCDH867250DH867251
length844198
definitionDH867250|Mus musculus domesticus DNA, BAC clone: B6Ng01-040D09, 5' end.DH867251|Mus musculus domesticus DNA, BAC clone: B6Ng01-040D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,859,706 - 26,860,548)(26,990,930 - 26,991,127)
sequence
gaattctcattacatacaagaatggcagcctacattacatattattagaa
agaaggtgggttgtggtttaaggaggaactggagtactgtattattcatg
aaagggttagtagtacagaactgccctggggcatgtttttcactaggccc
agaggaacagaataactaggtatttaccaagggacccctggtggtgagtt
taacaatagaccagcattgcatcagaccactcacctggttcctgtgaata
cctgattttagatagggctgttcctatctcaactgtaaacattgcctggt
tcctgccagtctttttgcatgcattttttgttttgtgtcagataacttca
atgtaccttggctgatgtgtcacctaacttctttgctttcttctataata
tataagtctgatgctctttttgagaaattacgtccacaaattatagaata
aatcaacatcagaacataaggaaaaataaaggattaacattaccacagtg
aatatcaacagggatgttctcgacgcctctttttactgatcttggccgac
cttgctcagtggatgttgaaccccattcatcagaccctgcaattggctgg
taatgcaccatgagcttaaacagaaaagatcagagcaatatagtctacat
tcacttgtgatttaagacttttttttttttttttttttttgagacagggt
ttctctgtatagccctggctgtcctgaactcactttgtagaccaggctgg
ccttgaactcagaaatctgcctgcctctgcctcccaagtgctgggattaa
aggcgtgggcgatttttagacattttgaatgacaaaaacaaatc
tgttcgtattttcataccaatacataatttacaggcataaatttatattt
aagatatatatatatatatatacatatatatatatatatatacatttata
atatgtatttatatttgactgcctttgttcatctttatggacaaagtagc
ttatgtatttcctatttctttcttttttttttgttttttgtttttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_26859706_26860548
seq2: B6Ng01-040D09.b_45_888

seq1  GAATTCTCATTACATACAAGAATGGCAGCCTACATTACATATTATTAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTACATACAAGAATGGCAGCCTACATTACATATTATTAGAA  50

seq1  AGAAGGTGGGTTGTGGTTTAAGGAGGAACTGGAGTACTGTATTATTCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTGGGTTGTGGTTTAAGGAGGAACTGGAGTACTGTATTATTCATG  100

seq1  AAAGGGTTAGTAGTACAGAACTGCCCTGGGGCATGTTTTTCACTAGGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTTAGTAGTACAGAACTGCCCTGGGGCATGTTTTTCACTAGGCCC  150

seq1  AGAGGAACAGAATAACTAGGTATTTACCAAGGGACCCCTGGTGGTGAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAACAGAATAACTAGGTATTTACCAAGGGACCCCTGGTGGTGAGTT  200

seq1  TAACAATAGACCAGCATTGCATCAGACCACTCACCTGGTTCCTGTGAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATAGACCAGCATTGCATCAGACCACTCACCTGGTTCCTGTGAATA  250

seq1  CCTGATTTTAGATAGGGCTGTTCCTATCTCAACTGTAAACATTGCCTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTTTAGATAGGGCTGTTCCTATCTCAACTGTAAACATTGCCTGGT  300

seq1  TCCTGCCAGTCTTTTTGCATGCATTTTTTGTTTTGTGTCAGATAACTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCAGTCTTTTTGCATGCATTTTTTGTTTTGTGTCAGATAACTTCA  350

seq1  ATGTACCTTGGCTGATGTGTCACCTAACTTCTTTGCTTTCTTCTATAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACCTTGGCTGATGTGTCACCTAACTTCTTTGCTTTCTTCTATAATA  400

seq1  TATAAGTCTGATGCTCTTTTTGAGAAATTACGTCCACAAATTATAGAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTCTGATGCTCTTTTTGAGAAATTACGTCCACAAATTATAGAATA  450

seq1  AATCAACATCAGAACATAAGGAAAAATAAAGGATTAACATTACCACAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACATCAGAACATAAGGAAAAATAAAGGATTAACATTACCACAGTG  500

seq1  AATATCAACAGGGATGTTCTCGACGCCTCTTTTTACTGATCTTGGCCGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAACAGGGATGTTCTCGACGCCTCTTTTTACTGATCTTGGCCGAC  550

seq1  CTTGCTCAGTGGATGTTGAACCCCATTCATCAGACCCTGCAATTGGCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCAGTGGATGTTGAACCCCATTCATCAGACCCTGCAATTGGCTGG  600

seq1  TAATGCACCATGAGCTTAAACAGAAAAGATCAGAGCAATATAGTCTACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCACCATGAGCTTAAACAGAAAAGATCAGAGCAATATAGTCTACAT  650

seq1  TCACTTGTGATTTAAGACTTTTTTTTTTTTTTTTTTTTTGGAGACAGGGT  700
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCACTTGTGATTTAAGACTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGT  700

seq1  TTCTCTGTATAGCCCTGGCTGTCCTGAACTCACTTTGTAGACCAGGCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTATAGCCCTGGCTGTCCTGAACTCACTTTGTAGACCAGGCTGG  750

seq1  CCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAA  800

seq1  AGGCGTGGGCGA-TTTAAGACATTTTGAATGACAAAAACAAATC  843
      |||||||||||| ||| |||||||||||||||||||||||||||
seq2  AGGCGTGGGCGATTTTTAGACATTTTGAATGACAAAAACAAATC  844

seq1: chr8_26990930_26991127
seq2: B6Ng01-040D09.g_75_272 (reverse)

seq1  CAAAAAAACAAAAAACAAAAAAAAAAGAAAGAAATAGGAAATACATAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAACAAAAAACAAAAAAAAAAGAAAGAAATAGGAAATACATAAGC  50

seq1  TACTTTGTCCATAAAGATGAACAAAGGCAGTCAAATATAAATACATATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGTCCATAAAGATGAACAAAGGCAGTCAAATATAAATACATATTA  100

seq1  TAAATGTATATATATATATATATATGTATATATATATATATATATCTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTATATATATATATATATATGTATATATATATATATATATCTTAA  150

seq1  ATATAAATTTATGCCTGTAAATTATGTATTGGTATGAAAATACGAACA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATTTATGCCTGTAAATTATGTATTGGTATGAAAATACGAACA  198