BAC Information

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BAC

Clone NameB6Ng01-040G10
Chromosome1 (Build37)8 (Build37)
Map Location 20,438,624 - 20,438,909127,024,603 - 127,025,250
singlet/doubletsingletsinglet
Overlap genePkhd1
Upstream genenone
Downstream geneIl17a, Il17f, Mcm3, Paqr8, Efhc1, Tram2, LOC100040291, Tmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076, Kcnq5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040G10.bB6Ng01-040G10.g
ACCDH867383DH867384
length247648
definitionDH867383|Mus musculus domesticus DNA, BAC clone: B6Ng01-040G10, 5' end.DH867384|Mus musculus domesticus DNA, BAC clone: B6Ng01-040G10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(20,438,624 - 20,438,909)(127,024,603 - 127,025,250)
sequence
gaattcatctttccatcatctgtgcatttatccatctgtcatccatccaa
tgtctatccatcaatgtatccatcaccatttcatccatcacctatccatt
gattcattcaacatatattcacccctctattatctaccattcatatatgt
atctatgtatgtatctatctatgcatctatctatgtattatctatgtatg
tatgtatgtatgtatgtatgtatgcatgtatgtatgtatgtatatat
gaattccctaatgtgctttgaataaggcctgcaagctcacttgggtgttt
ctgtcttagtaatgggagattccagtatgctggacttctgcagaataaaa
cactctttgcatttacatactatttgagtctggggtatcattcttcaacg
aatcgtggacccttacaacaccaccagaccaacatccaacactccttcct
ctctagagcccattcttggcaggccagacccctgcccacccccacccttt
agacatcactgcactgggcattacatttccaatacatgcttttggggaat
gtatgtggaatacagtgtctctacttaaacattcacaggttatttgtggg
ttagagtaaggtgatatggctggtaatttggggtatttgatagttcagtg
cagccccctccctcccagctcctcttctctgctgctccggactgtgatga
cagagaaaaccttgaataaagcaatccaaggtttcctgctagctcaggcc
ctggatgtcagaagaaacagaaaagttctgtggagcacaggagacctctg
cttagtgatgcacaggcctgcccctgtgaaccatgggagggactcatttc
agtcattagggactcggtggcagagcatatatcataggaggaggaccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_20438624_20438909
seq2: B6Ng01-040G10.b_189_286 (reverse)

seq1  ATATATACATACATACATACATACATACATACATACATACACACACATAT  50
      |||||||||||||||||||||| |||||||||||||||||          
seq2  ATATATACATACATACATACATGCATACATACATACATAC----------  40

seq1  ATATACATTCATACATAAGTATATAAATACATAATTTAATAGCCACTAAG  100
        |||||| ||||||||  || ||| ||| |||  |  ||||        
seq2  --ATACATACATACATAGATA-ATACATAGATAGATGCATAG--------  79

seq1  CTACATATATACATACATTACATATTCCCAGTCACTAAGGCACATACATA  150
          ||| ||||||||| || |||                          
seq2  ----ATAGATACATACA-TAGATA--------------------------  98

seq1  CATATCCCTATAGCCACTAAGCCACATACATAGTCATATAATAATGGCAT  200
                                                        
seq2  --------------------------------------------------  98

seq1  AGCCACTGCTCTACATACATACATACTCCCCATAGTCACTAAGACACATA  250
                                                        
seq2  --------------------------------------------------  98

seq1  CATGCATACATACATACATACATACATACATAGATA  286
                                          
seq2  ------------------------------------  98

seq1: chr8_127024603_127025250
seq2: B6Ng01-040G10.g_69_716

seq1  GAATTCCCTAATGTGCTTTGAATAAGGCCTGCAAGCTCACTTGGGTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAATGTGCTTTGAATAAGGCCTGCAAGCTCACTTGGGTGTTT  50

seq1  CTGTCTTAGTAATGGGAGATTCCAGTATGCTGGACTTCTGCAGAATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTAGTAATGGGAGATTCCAGTATGCTGGACTTCTGCAGAATAAAA  100

seq1  CACTCTTTGCATTTACATACTATTTGAGTCTGGGGTATCATTCTTCAACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTTGCATTTACATACTATTTGAGTCTGGGGTATCATTCTTCAACG  150

seq1  AATCGTGGACCCTTACAACACCACCAGACCAACATCCAACACTCCTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGTGGACCCTTACAACACCACCAGACCAACATCCAACACTCCTTCCT  200

seq1  CTCTAGAGCCCATTCTTGGCAGGCCAGACCCCTGCCCACCCCCACCCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAGCCCATTCTTGGCAGGCCAGACCCCTGCCCACCCCCACCCTTT  250

seq1  AGACATCACTGCACTGGGCATTACATTTCCAATACATGCTTTTGGGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCACTGCACTGGGCATTACATTTCCAATACATGCTTTTGGGGAAT  300

seq1  GTATGTGGAATACAGTGTCTCTACTTAAACATTCACAGGTTATTTGTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGGAATACAGTGTCTCTACTTAAACATTCACAGGTTATTTGTGGG  350

seq1  TTAGAGTAAGGTGATATGGCTGGTAATTTGGGGTATTTGATAGTTCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTAAGGTGATATGGCTGGTAATTTGGGGTATTTGATAGTTCAGTG  400

seq1  CAGCCCCCTCCCTCCCAGCTCCTCTTCTCTGCTGCTCCGGACTGTGATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCCTCCCTCCCAGCTCCTCTTCTCTGCTGCTCCGGACTGTGATGA  450

seq1  CAGAGAAAACCTTGAATAAAGCAATCCAAGGTTTCCTGCTAGCTCAGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAAACCTTGAATAAAGCAATCCAAGGTTTCCTGCTAGCTCAGGCC  500

seq1  CTGGATGTCAGAAGAAACAGAAAAGTTCTGTGGAGCACAGGAGACCTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGTCAGAAGAAACAGAAAAGTTCTGTGGAGCACAGGAGACCTCTG  550

seq1  CTTAGTGATGCACAGGCCTGCCCCTGTGAACCATGGGAGGGACTCATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGATGCACAGGCCTGCCCCTGTGAACCATGGGAGGGACTCATTTC  600

seq1  AGTCATTAGGGACTCGGTGGCAGAGCATATATCATAGGAGGAGGACCG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTAGGGACTCGGTGGCAGAGCATATATCATAGGAGGAGGACCG  648