BAC Information

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BAC

Clone NameB6Ng01-040L21
Chromosome8 (Build37)
Map Location 115,948,407 - 116,122,010
singlet/doubletdoublet
Overlap genenone
Upstream geneCntnap4, LOC100042061
Downstream geneMon1b, 4930481F22Rik, Adamts18, Nudt7, AI427515, Clec3a, Wwox
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040L21.bB6Ng01-040L21.g
ACCDH867613DH867614
length1,1251,069
definitionDH867613|Mus musculus domesticus DNA, BAC clone: B6Ng01-040L21, 5' end.DH867614|Mus musculus domesticus DNA, BAC clone: B6Ng01-040L21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,120,876 - 116,122,010)(115,948,407 - 115,949,493)
sequence
gaattctttggttcaagactgtctttccatgtatgctaccgagatcagct
gtcctggttgctctatgatgtttctcctaaaagagtcctttatagaggga
ggtaaccaaacaatgtaaatcagttccagattgcttaaacaaagtggatc
tgactcacctgttctcctcagctcaacatgaatgatgccaagaaaggggg
tttgctatattactatatcggtctctgttgactgttctacaagttcccgt
acaaaaagtacttagtggtttttgtttcacatctgaaggagctgtaaagc
tgctagtaagaatcttgttattgggagtccatgaggtagacacttaccat
gtagcctgatgacctgagtttgatccctagaacccccagggagaaaggga
aaacctatccctacaagttgacctcaccatgttcacagtggtataaggct
gactccacctcatgctgtgattagcaagaccttcactctataatgaaaac
cccaagggattagggaaagcaaaagtttttaactatttgattctacagaa
caggatgcctgtgtatagaaaaagaaaaaaatgactgtcagtgacatata
tatatatatgtcactgatcatgacaaattcctgccttcttccccctacag
gctgatattccagagagttacagtcttcatgcttttccagcatagccccc
ttcccagatttcccatcctgttggttcaggataggaggccttacctaatg
actattatggggcttgagatgacctccttttctgagcagacaggcttcca
acctcagagctctgagactagtaggttgcagctgccagctatggaggaga
gtaccctatcatctcctgctgtgtctgattctttgatgatttttttcctt
ttaaacagttttattctctctcttaaaactatggggacactatttttttt
ccaggctgtgatgtggcacttaaacatcacagagactgcattggttggtt
tgtagaacattttttcttcgactgctggctgtgagacccttgtaggtctt
catctttaacagttgatctagaccactgtcagaagttgactgtcagttaa
atcataagcgtttctagctggcagg
gaattcactaaaaagcaacatctgttgcagagttagttttgatttttcag
aagacattgcccaaagccaccaattattactgaattggagaataagctag
atttttttttcatgtaagtcatctgtgccattagtttttagctttaattt
caatttttctgcatatgttagaagtgatataactattttattagttgaat
gacagctgccaaatagtaataataattcctgtgacattagcaacaattcc
ttcaaaatttgaagatgctgtttttaaaaacaatttatttttattctaca
tgaatgagtacctgcctgcatggatggatgtggaccatgtatatcaggtg
cacaagaaagctagaagtcacctggtcacctggaaccagagagtcagtaa
tgagccaccatgtgtgtcctgggaaccaaacttggatcctctgcaggaat
agccattgttttttcaccactgagctatctctcctgccccaactctccag
cccaaaatgatgtcagttttacattaggaccattacatctctttaatcaa
aaattatttgttgacatatttcaagagcttttcatcatcaaatttaagag
agagaaaaaattaccttagtggttcttaaaaaaaaaaaaaaaaaaaaacc
tatcgttgaatatgacattatcatttcagcaaattgtattttgaggaaat
tatttaattttataacaataaagcaaatcaaaagtttagtggtgcacagc
accttggtaaacaaacgagcaaacaaaacaaacatacaaaaaacatgttt
ttgactcctgggtaaggtgacagggtaaaagctacctaacccttgtagta
atagtgttcaggctataatatcttcttgcacttattttacatccttaacc
tgtaattgctgacctattatgtccctgcttctgatctttgctcagcatag
atacagtgggaccttagtgacagcagggtagagcacaggctctctcttat
tacccatgacagatggggtcactgtctagctgtctgtgtgacttgtaata
agaattatatatattttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_116120876_116122010
seq2: B6Ng01-040L21.b_44_1168 (reverse)

seq1  CCTGCCAGCTAAGAAAGCATCACTGATTTAGACTGACAGGTCCACTTCTG  50
      |||||||||||  || || |   ||||||| ||||||| ||| |||||||
seq2  CCTGCCAGCTAGAAACGCTT--ATGATTTA-ACTGACA-GTCAACTTCTG  46

seq1  ACAGGTGCTCTAGATCAACTGGTAAAGATGAAGGAACTTACAAGGGTCTC  100
      ||| ||| ||||||||||||| |||||||||||  || ||||||||||||
seq2  ACA-GTGGTCTAGATCAACTGTTAAAGATGAAG--ACCTACAAGGGTCTC  93

seq1  ACAGCCAAGCAGTCGAAG-AAAAATGTTCCTTACAAACCAACCAATGCAG  149
      |||||| ||||||||||| ||||||||||  |||||||||||||||||||
seq2  ACAGCC-AGCAGTCGAAGAAAAAATGTTC--TACAAACCAACCAATGCAG  140

seq1  TCTCTGTGATGTTTAAGTGCCACATCACAGCCTGGAAAAAAAATAGTGTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGATGTTTAAGTGCCACATCACAGCCTGGAAAAAAAATAGTGTC  190

seq1  CCCATAGTTTTAAGAGAGAGAATAAAACTGTTTAAAAGGAAAAAAAATCA  249
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCCATAGTTTTAAGAGAGAGAATAAAACTGTTTAAAAGG-AAAAAAATCA  239

seq1  TCAAAGAATCAGACACAGCAGGAGATGATAGGGTACTCTCCTCCATAGCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAATCAGACACAGCAGGAGATGATAGGGTACTCTCCTCCATAGCT  289

seq1  GGCAGCTGCAACCTACTAGTCTCAGAGCTCTGAGGTTGGAAGCCTGTCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTGCAACCTACTAGTCTCAGAGCTCTGAGGTTGGAAGCCTGTCTG  339

seq1  CTCAGAAAAGGAGGTCATCTCAAGCCCCATAATAGTCATTAGGTAAGGCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAAAGGAGGTCATCTCAAGCCCCATAATAGTCATTAGGTAAGGCC  389

seq1  TCCTATCCTGAACCAACAGGATGGGAAATCTGGGAAGGGGGCTATGCTGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATCCTGAACCAACAGGATGGGAAATCTGGGAAGGGGGCTATGCTGG  439

seq1  AAAAGCATGAAGACTGTAACTCTCTGGAATATCAGCCTGTAGGGGGAAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCATGAAGACTGTAACTCTCTGGAATATCAGCCTGTAGGGGGAAGA  489

seq1  AGGCAGGAATTTGTCATGATCAGTGACATATATATATATATGTCACTGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGAATTTGTCATGATCAGTGACATATATATATATATGTCACTGAC  539

seq1  AGTCATTTTTTTCTTTTTCTATACACAGGCATCCTGTTCTGTAGAATCAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTTTTTTCTTTTTCTATACACAGGCATCCTGTTCTGTAGAATCAA  589

seq1  ATAGTTAAAAACTTTTGCTTTCCCTAATCCCTTGGGGTTTTCATTATAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTAAAAACTTTTGCTTTCCCTAATCCCTTGGGGTTTTCATTATAGA  639

seq1  GTGAAGGTCTTGCTAATCACAGCATGAGGTGGAGTCAGCCTTATACCACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGTCTTGCTAATCACAGCATGAGGTGGAGTCAGCCTTATACCACT  689

seq1  GTGAACATGGTGAGGTCAACTTGTAGGGATAGGTTTTCCCTTTCTCCCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACATGGTGAGGTCAACTTGTAGGGATAGGTTTTCCCTTTCTCCCTG  739

seq1  GGGGTTCTAGGGATCAAACTCAGGTCATCAGGCTACATGGTAAGTGTCTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTCTAGGGATCAAACTCAGGTCATCAGGCTACATGGTAAGTGTCTA  789

seq1  CCTCATGGACTCCCAATAACAAGATTCTTACTAGCAGCTTTACAGCTCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGGACTCCCAATAACAAGATTCTTACTAGCAGCTTTACAGCTCCT  839

seq1  TCAGATGTGAAACAAAAACCACTAAGTACTTTTTGTACGGGAACTTGTAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGTGAAACAAAAACCACTAAGTACTTTTTGTACGGGAACTTGTAG  889

seq1  AACAGTCAACAGAGACCGATATAGTAATATAGCAAACCCCCTTTCTTGGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCAACAGAGACCGATATAGTAATATAGCAAACCCCCTTTCTTGGC  939

seq1  ATCATTCATGTTGAGCTGAGGAGAACAGGTGAGTCAGATCCACTTTGTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCATGTTGAGCTGAGGAGAACAGGTGAGTCAGATCCACTTTGTTT  989

seq1  AAGCAATCTGGAACTGATTTACATTGTTTGGTTACCTCCCTCTATAAAGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATCTGGAACTGATTTACATTGTTTGGTTACCTCCCTCTATAAAGG  1039

seq1  ACTCTTTTAGGAGAAACATCATAGAGCAACCAGGACAGCTGATCTCGGTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTTAGGAGAAACATCATAGAGCAACCAGGACAGCTGATCTCGGTA  1089

seq1  GCATACATGGAAAGACAGTCTTGAACCAAAGAATTC  1135
      ||||||||||||||||||||||||||||||||||||
seq2  GCATACATGGAAAGACAGTCTTGAACCAAAGAATTC  1125

seq1: chr8_115948407_115949493
seq2: B6Ng01-040L21.g_67_1135

seq1  GAATTCACTAAAAAGCAACATCTGTTGCAGAGTTAGTTTTGATTTTTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAAAAAGCAACATCTGTTGCAGAGTTAGTTTTGATTTTTCAG  50

seq1  AAGACATTGCCCAAAGCCACCAATTATTACTGAATTGGAGAATAAGCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATTGCCCAAAGCCACCAATTATTACTGAATTGGAGAATAAGCTAG  100

seq1  ATTTTTTTTTCATGTAAGTCATCTGTGCCATTAGTTTTTAGCTTTAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTCATGTAAGTCATCTGTGCCATTAGTTTTTAGCTTTAATTT  150

seq1  CAATTTTTCTGCATATGTTAGAAGTGATATAACTATTTTATTAGTTGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTCTGCATATGTTAGAAGTGATATAACTATTTTATTAGTTGAAT  200

seq1  GACAGCTGCCAAATAGTAATAATAATTCCTGTGACATTAGCAACAATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTGCCAAATAGTAATAATAATTCCTGTGACATTAGCAACAATTCC  250

seq1  TTCAAAATTTGAAGATGCTGTTTTTAAAAACAATTTATTTTTATTCTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATTTGAAGATGCTGTTTTTAAAAACAATTTATTTTTATTCTACA  300

seq1  TGAATGAGTACCTGCCTGCATGGATGGATGTGGACCATGTATATCAGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAGTACCTGCCTGCATGGATGGATGTGGACCATGTATATCAGGTG  350

seq1  CACAAGAAAGCTAGAAGTCACCTGGTCACCTGGAACCAGAGAGTCAGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAAAGCTAGAAGTCACCTGGTCACCTGGAACCAGAGAGTCAGTAA  400

seq1  TGAGCCACCATGTGTGTCCTGGGAACCAAACTTGGATCCTCTGCAGGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCACCATGTGTGTCCTGGGAACCAAACTTGGATCCTCTGCAGGAAT  450

seq1  AGCCATTGTTTTTTCACCACTGAGCTATCTCTCCTGCCCCAACTCTCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTGTTTTTTCACCACTGAGCTATCTCTCCTGCCCCAACTCTCCAG  500

seq1  CCCAAAATGATGTCAGTTTTACATTAGGACCATTACATCTCTTTAATCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAATGATGTCAGTTTTACATTAGGACCATTACATCTCTTTAATCAA  550

seq1  AAATTATTTGTTGACATATTTCAAGAGCTTTTCATCATCAAATTTAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTTGTTGACATATTTCAAGAGCTTTTCATCATCAAATTTAAGAG  600

seq1  AGAGAAAAAATTACCTTAGTGGTTCTTAAAAAAAAAAAAAAAAAAAAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAAATTACCTTAGTGGTTCTTAAAAAAAAAAAAAAAAAAAAACC  650

seq1  TATCGTTGAATATGACATTATCATTTCAGCAAATTGTATTTTGAGGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGTTGAATATGACATTATCATTTCAGCAAATTGTATTTTGAGGAAAT  700

seq1  TATTTAATTTTATAACAATAAAGCAAATCAAAAGTTTAGTGGTGCACAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATTTTATAACAATAAAGCAAATCAAAAGTTTAGTGGTGCACAGC  750

seq1  ACCTTGGTAAACAAACGAGCAAACAAAACAAACATACAAAAAACATGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGTAAACAAACGAGCAAACAAAACAAACATACAAAAAACATGTTT  800

seq1  TTGACTCCTGGGTAAGGTGACAGGGTAAAAGCTACCTAACCCTTGTAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCCTGGGTAAGGTGACAGGGTAAAAGCTACCTAACCCTTGTAGTA  850

seq1  ATAGTGTTCAGGCTATAATATCTTCTTGCACTTATTTTACATCCTTAACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTTCAGGCTATAATATCTTCTTGCACTTATTTTACATCCTTAACC  900

seq1  TGTAATTGCCTGACCTATTATGTCCCTGCTTCTGAATCTTTGCTCAGCAT  950
      |||||||| ||||||||||||||||||||||||| |||||||||||||||
seq2  TGTAATTG-CTGACCTATTATGTCCCTGCTTCTG-ATCTTTGCTCAGCAT  948

seq1  AGATACAGGTGGGACCCTAAGTGACCAGCAGGGGTAGAGCACAGGGCTCC  1000
      ||||||| |||||| ||| ||||| ||||| |||||||||||| |||| |
seq2  AGATACA-GTGGGA-CCTTAGTGA-CAGCA-GGGTAGAGCACA-GGCT-C  992

seq1  TCTCTTATTACCCATGGACAGATGGGGGTCACTGTCCTTAGCTGTTCCTT  1050
      ||||||||||||||| ||||||| ||||||||||||  |||||||    |
seq2  TCTCTTATTACCCAT-GACAGAT-GGGGTCACTGTC--TAGCTGT---CT  1035

seq1  GTGTGACCTTGTAAATAAGAATATATATATATATTTA  1087
      |||||| ||||| ||||||||| ||||||||| ||||
seq2  GTGTGA-CTTGT-AATAAGAAT-TATATATATTTTTA  1069