BAC Information

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BAC

Clone NameB6Ng01-040N14
Chromosome8 (Build37)
Map Location 105,245,452 - 105,373,163
singlet/doubletdoublet
Overlap geneCdh11
Upstream genenone
Downstream geneEG667618, LOC100041368, 1600027J07Rik, LOC100041397
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040N14.bB6Ng01-040N14.g
ACCDH867689DH867690
length1,1251,142
definitionDH867689|Mus musculus domesticus DNA, BAC clone: B6Ng01-040N14, 5' end.DH867690|Mus musculus domesticus DNA, BAC clone: B6Ng01-040N14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,245,452 - 105,246,585)(105,372,007 - 105,373,163)
sequence
gaattcagatgaaatttaaatcttctacaatgtgcttctagcatcttgtc
tgagagatggtagcaacaagaaaaatagaattgttttactgtgtgagata
ctcaggatggcatagatttggaaaccctgggtttatcctggacatgcatg
gagacattcacataaccggaagctgatagattaggcaactctaaggcata
ttatagctgggcaggaaaattgatgccagtaataagtcacacatgtagat
ctcaggacccagatatcagccgtccctgggaaccagtaaactgacagcaa
atgaacctcaagggagggacatttactaaatagatctaaaaagcagagct
ttcatactaaaatgaatttttcttaagccttcataactactagtttctct
tcctaagttgagacttgtatgggacccatcaatcatttcttccttatgat
ttctttctcttggaatgagaatgtctgtcttccctattcctcaccccatt
gtatgatggaaacacataattcatttgggtccacaaattacagctacagg
ggatttggcttcaagattaactttaatttggctcctccatgtttgatata
gataaaatttcaatgagaggtggaactataaaattagtgttactccatcc
cctgccaccacttagggttcagggaaccctgagaaagacaaggtagaaag
attttaagagccagagagaatgagggcaccaaggaaacgagatcttctaa
aaacagtatccatgcacatatgaagtcacagagactgtgacagtaagcac
aggatatactcaggtctgaaccagatagggttccagtcctgagaggtgaa
atggctcatagccctaatgtttaacccaaaagccatctctaattgataat
tgctcacaaaagaaaaatggctttctccatagagtctctctgggtataca
aacaaatcttaaggccagcctcatacctggcagcatgcccatatgagttt
catgggcatatttcttctgatgtctgtttgtctatttcgtttatatgttt
ttattatttactatcttttgccatatgtatttttaatgagaagagaaaga
aaaggtgtggaattggtagggaggg
gaattcagaagcctctttcttgagactgggtataacatttcgactgttac
atttgccccaaactggatttaggataacaatagttaaaacatctttattt
atatgttcttcctggtttaaaaacaggttgtgtatgtttgttcgcttgtt
tgtttttggtaaattgtagttattgtcacggaaacttgagcagaaactgc
atgaggccgtcacttttacacagtcaaccccatgttcatgttctaacttg
aaccagttctttgagctgcttgatttcttgaattatctgataagacaaaa
aacatttgacttttttcactgaccctaatggaaacccccagtgaaaatcc
ctactgttggctgatcctgagagaaattcacaacactcatttttcagatt
tgccttttcatcatcttgggtatttctaagaattttataatgtcaactta
cactttaaagtatggttattaaggaggtgcttgtttctcttataaatgaa
taagtttttaattgtaatgagtagaaggttattttaacataaatacaatg
aaaattggttgcttcataaagatactaagccaaacgcccactctctgttg
ggaggagggtagtgctgtttaagggcaaatcagaaagtgataagtaaatg
aaaaaggcaaattactaataaaaacattggcgggagtgaaaaagttatac
tttttacactgagcattatttaacagcaggtatgcatacaaacctaatct
cccattcttaaggctattagtgtgtcgtattccatgcaataagaagtatc
tctttaaggaattagcgactatatggtgctaaagccatttacttaaagct
taactcttaagagctttctggaataagcacccattactcagatgctaaga
gtgaagttgaattgggtcccttatggcaagatttccattgtcaaagcaga
gacagtctcttagcattctttcttactgtgggtgactagtgctagcttta
catcataacttgagtagacacacttagcttttttctgccattaacatgct
ttctcacttttctcattcgaacttataggaagaagccttactttttcata
gatattgcaccaaccactttggaactgttggctcctatgaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_105245452_105246585
seq2: B6Ng01-040N14.b_47_1171

seq1  GAATTCAGATGAAATTTAAATCTTCTACAATGTGCTTCTAGCATCTTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATGAAATTTAAATCTTCTACAATGTGCTTCTAGCATCTTGTC  50

seq1  TGAGAGATGGTAGCAACAAGAAAAATAGAATTGTTTTACTGTGTGAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGATGGTAGCAACAAGAAAAATAGAATTGTTTTACTGTGTGAGATA  100

seq1  CTCAGGATGGCATAGATTTGGAAACCCTGGGTTTATCCTGGACATGCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGATGGCATAGATTTGGAAACCCTGGGTTTATCCTGGACATGCATG  150

seq1  GAGACATTCACATAACCGGAAGCTGATAGATTAGGCAACTCTAAGGCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATTCACATAACCGGAAGCTGATAGATTAGGCAACTCTAAGGCATA  200

seq1  TTATAGCTGGGCAGGAAAATTGATGCCAGTAATAAGTCACACATGTAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCTGGGCAGGAAAATTGATGCCAGTAATAAGTCACACATGTAGAT  250

seq1  CTCAGGACCCAGATATCAGCCGTCCCTGGGAACCAGTAAACTGACAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGACCCAGATATCAGCCGTCCCTGGGAACCAGTAAACTGACAGCAA  300

seq1  ATGAACCTCAAGGGAGGGACATTTACTAAATAGATCTAAAAAGCAGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACCTCAAGGGAGGGACATTTACTAAATAGATCTAAAAAGCAGAGCT  350

seq1  TTCATACTAAAATGAATTTTTCTTAAGCCTTCATAACTACTAGTTTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACTAAAATGAATTTTTCTTAAGCCTTCATAACTACTAGTTTCTCT  400

seq1  TCCTAAGTTGAGACTTGTATGGGACCCATCAATCATTTCTTCCTTATGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGTTGAGACTTGTATGGGACCCATCAATCATTTCTTCCTTATGAT  450

seq1  TTCTTTCTCTTGGAATGAGAATGTCTGTCTTCCCTATTCCTCACCCCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTCTTGGAATGAGAATGTCTGTCTTCCCTATTCCTCACCCCATT  500

seq1  GTATGATGGAAACACATAATTCATTTGGGTCCACAAATTACAGCTACAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGATGGAAACACATAATTCATTTGGGTCCACAAATTACAGCTACAGG  550

seq1  GGATTTGGCTTCAAGATTAACTTTAATTTGGCTCCTCCATGTTTGATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGGCTTCAAGATTAACTTTAATTTGGCTCCTCCATGTTTGATATA  600

seq1  GATAAAATTTCAATGAGAGGTGGAACTATAAAATTAGTGTTACTCCATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAATTTCAATGAGAGGTGGAACTATAAAATTAGTGTTACTCCATCC  650

seq1  CCTGCCACCACTTAGGGTTCAGGGAACCCTGAGAAAGACAAGGTAGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCACCACTTAGGGTTCAGGGAACCCTGAGAAAGACAAGGTAGAAAG  700

seq1  ATTTTAAGAGCCAGAGAGAATGAGGGCACCAAGGAAACGAGATCTTCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAGAGCCAGAGAGAATGAGGGCACCAAGGAAACGAGATCTTCTAA  750

seq1  AAACAGTATCCATGCACATATGAAGTCACAGAGACTGTGACAGTAAGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTATCCATGCACATATGAAGTCACAGAGACTGTGACAGTAAGCAC  800

seq1  AGGATATACTCAGGTCTGAACCAGATAGGGTTCCAGTCCTGAGAGGTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATACTCAGGTCTGAACCAGATAGGGTTCCAGTCCTGAGAGGTGAA  850

seq1  ATGGCTCATAGCCCTAATGTTTAACCCAAAAGCCATCTCTAATTGATAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCATAGCCCTAATGTTTAACCCAAAAGCCATCTCTAATTGATAAT  900

seq1  TGCTCACAAAAGAAAAATTGGCTTTCTCCATAGAGTCTCTCTGGGTATAC  950
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGCTCACAAAAGAAAAA-TGGCTTTCTCCATAGAGTCTCTCTGGGTATAC  949

seq1  AAACAAATCTTAAGGCCAGCCTCATACCTGGCAGCATGCCCATATGAGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATCTTAAGGCCAGCCTCATACCTGGCAGCATGCCCATATGAGTT  999

seq1  TCATGGGCATATTTTCTTCTGATTGTCTGTTTTGTTCTATTTCGTTTTAT  1050
      ||||||||||| |||||||||| |||||||||   ||||||||| |||||
seq2  TCATGGGCATA-TTTCTTCTGA-TGTCTGTTT--GTCTATTTCG-TTTAT  1044

seq1  ATGTTTTTATTTTATTTACTTATCTTTTTGCCATATGTA-TTTTAATGAG  1099
      |||||||||  |||||||| |||| |||||||||||||| ||||||||||
seq2  ATGTTTTTA--TTATTTAC-TATC-TTTTGCCATATGTATTTTTAATGAG  1090

seq1  -AGAGAAAGAAAAGGTGTGGATTTGGGTAGGAAGGG  1134
       |||||||||||||||||||| || |||||| ||||
seq2  AAGAGAAAGAAAAGGTGTGGAATT-GGTAGGGAGGG  1125

seq1: chr8_105372007_105373163
seq2: B6Ng01-040N14.g_70_1211 (reverse)

seq1  ATTC-TAGGAG-CAACAGTTTTCAAAGTGGTTGGTGCAATATCTATGAAA  48
      |||| |||||| |||||| || ||||||||||||||||||||||||||||
seq2  ATTCATAGGAGCCAACAG-TTCCAAAGTGGTTGGTGCAATATCTATGAAA  49

seq1  AAGTTAAGGGCTCTCTCTATAGCTCCAGAATGAGAAAAGTGAAGAAAGCA  98
      ||| |||||  |||  |||||  | | |||||||||||||| ||||||||
seq2  AAG-TAAGGCTTCTTCCTATAAGTTC-GAATGAGAAAAGTG-AGAAAGCA  96

seq1  TGGTTAATGGGCAGGAAAAAAAGCTAAGGTGTGTCTACTCCAAGTTAATG  148
      | |||||| |||||  ||||||||||| ||||||||||| |||||||   
seq2  T-GTTAAT-GGCAG--AAAAAAGCTAA-GTGTGTCTACT-CAAGTTA--T  138

seq1  GATGTAAAAGCTAGCACTAGTCACCCACAGTAAAGAAAGAATGCTAAGGA  198
      ||||| ||||||||||||||||||||||||| ||||||||||||||| ||
seq2  GATGT-AAAGCTAGCACTAGTCACCCACAGT-AAGAAAGAATGCTAA-GA  185

seq1  GACTGTTCTCTTGCTTTGACAATGGATATCCTTGCCATTAGGGA-CCAAT  247
      ||||| |||| ||||||||||||||| || |||||||| ||||| |||||
seq2  GACTG-TCTC-TGCTTTGACAATGGAAAT-CTTGCCATAAGGGACCCAAT  232

seq1  TCAACTTCACTCTTAGCATCTGAGTATTGGTTGCTTATTCCAGAAAGCTC  297
      |||||||||||||||||||||||||| ||| |||||||||||||||||||
seq2  TCAACTTCACTCTTAGCATCTGAGTAATGGGTGCTTATTCCAGAAAGCTC  282

seq1  TTAAGAGTTAAGCTTTAAGTAAAATGGCTTTAGCACCATATAGTCGCTAA  347
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTAAGAGTTAAGCTTTAAGT-AAATGGCTTTAGCACCATATAGTCGCTAA  331

seq1  TTCCTTAAAGAGATACTTCTTATTGCATGGAATACGACACACTAATAGCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAAAGAGATACTTCTTATTGCATGGAATACGACACACTAATAGCC  381

seq1  TTAAGAATGGGAGATTAGGTTTGTATGCATACCTGCTGTTAAATAATGCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAATGGGAGATTAGGTTTGTATGCATACCTGCTGTTAAATAATGCT  431

seq1  CAGTGT-AAAAGTATAACTTTTTCACTCCCGCCAATGTTTTTATTAGTAA  496
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTAAAAAGTATAACTTTTTCACTCCCGCCAATGTTTTTATTAGTAA  481

seq1  TTTGCCTTTTTCATTTACTTATCACTTTCTGATTTGCCCTTAAACAGCAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTTTTTCATTTACTTATCACTTTCTGATTTGCCCTTAAACAGCAC  531

seq1  TACCCTCCTCCCAACAGAGAGTGGGCGTTTGGCTTAGTATCTTTATGAAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTCCTCCCAACAGAGAGTGGGCGTTTGGCTTAGTATCTTTATGAAG  581

seq1  CAACCAATTTTCATTGTATTTATGTTAAAATAACCTTCTACTCATTACAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAATTTTCATTGTATTTATGTTAAAATAACCTTCTACTCATTACAA  631

seq1  TTAAAAACTTATTCATTTATAAGAGAAACAAGCACCTCCTTAATAACCAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAACTTATTCATTTATAAGAGAAACAAGCACCTCCTTAATAACCAT  681

seq1  ACTTTAAAGTGTAAGTTGACATTATAAAATTCTTAGAAATACCCAAGATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAAGTGTAAGTTGACATTATAAAATTCTTAGAAATACCCAAGATG  731

seq1  ATGAAAAGGCAAATCTGAAAAATGAGTGTTGTGAATTTCTCTCAGGATCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAGGCAAATCTGAAAAATGAGTGTTGTGAATTTCTCTCAGGATCA  781

seq1  GCCAACAGTAGGGATTTTCACTGGGGGTTTCCATTAGGGTCAGTGAAAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACAGTAGGGATTTTCACTGGGGGTTTCCATTAGGGTCAGTGAAAAA  831

seq1  AGTCAAATGTTTTTTGTCTTATCAGATAATTCAAGAAATCAAGCAGCTCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAATGTTTTTTGTCTTATCAGATAATTCAAGAAATCAAGCAGCTCA  881

seq1  AAGAACTGGTTCAAGTTAGAACATGAACATGGGGTTGACTGTGTAAAAGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTGGTTCAAGTTAGAACATGAACATGGGGTTGACTGTGTAAAAGT  931

seq1  GACGGCCTCATGCAGTTTCTGCTCAAGTTTCCGTGACAATAACTACAATT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGCCTCATGCAGTTTCTGCTCAAGTTTCCGTGACAATAACTACAATT  981

seq1  TACCAAAAACAAACAAGCGAACAAACATACACAACCTGTTTTTAAACCAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAAAACAAACAAGCGAACAAACATACACAACCTGTTTTTAAACCAG  1031

seq1  GAAGAACATATAAATAAAGATGTTTTAACTATTGTTATCCTAAATCCAGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACATATAAATAAAGATGTTTTAACTATTGTTATCCTAAATCCAGT  1081

seq1  TTGGGGCAAATGTAACAGTCGAAATGTTATACCCAGTCTCAAGAAAGAGG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCAAATGTAACAGTCGAAATGTTATACCCAGTCTCAAGAAAGAGG  1131

seq1  CTTCTGAATTC  1157
      |||||||||||
seq2  CTTCTGAATTC  1142