BAC Information

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BAC

Clone NameB6Ng01-041C08
Chromosome8 (Build37)
Map Location 18,488,906 - 18,560,415
singlet/doubletdoublet
Overlap genenone
Upstream geneCsmd1, LOC665638, LOC100040466
Downstream geneMcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041C08.bB6Ng01-041C08.g
ACCDH867893DH867894
length1,0451,036
definitionDH867893|Mus musculus domesticus DNA, BAC clone: B6Ng01-041C08, 5' end.DH867894|Mus musculus domesticus DNA, BAC clone: B6Ng01-041C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,488,906 - 18,489,956)(18,559,378 - 18,560,415)
sequence
gaattcatacagccttaccagcacaagccatcactgtccattcacaccca
cacactctccagatggtatcaaattattcccaatactccaaacttgaacc
tagatattcttgctagagttctctggaaaaacgagagatggtaccaacct
tctgaagtactttgtgtttaatgatttcagaggaaatctcattcaaggtc
acaacagctcattaaaaaaaaattcccatatgtagttgtaatctccaagt
agttccattaagggggaaatgtgcaggatttgattttccagagactcaag
aggaaaaaaaaaaaaaagccttggttgttcatctcctccaggaatccctc
ccctgcagaccatcacagtccatactctgggtgcttcatgccatgaaatt
ccaaatttggtcccatccctcactacacctaagggcaaataacaggctaa
caacccctctgtttttagaaagcagagagcagcaggtcagacaactgggc
ttctagcaaggaatgcaaatgctttcagtccagacagcccatcacaacct
cagtgacagacagaagccatcacagatcacagagagccctgcctcatagg
tgttcagaatgacatcatcagggcaacacacagttggaatttatagtgat
tacttggtaaccgcagtgcttctagaggattccaaaaactccctttcagt
tacacacctttgtttaccttctaaaggcttcaaatattgagcaactctgc
taatgtataaatgtgtgaaaaagaatcacacagttgggggcgtcatggat
gaggtgtctggggagaaatgatgggttggcttcctgggtctggttggctg
cttctgctttgtttaaagacagggtcttgccatctagcccaggctgccca
gaaacactggacaaacatcttgactcagatttccaaggctggatcatagg
acaggctccatgcccttttatggggtatttattcgagttcccctttcgtt
tgcaactaataagaaatcacatgaccaaagacagattcagtaatc
gaattcaaacagaggcaagttattgagtcatggttgtgtttggggtagaa
tgtaaggccatgtgtgttcagtaagcattcctccacagagacaacccaca
actcacagcagatttactgttaagaatttatacattaatagacagttttg
ttattatctaatctatatactgattgtgtatcagatgataaaatgtgttt
tctctgtactatagactgttcagtattttaagtaatatgaatcttgaaaa
acattttttaaaaaaaatattgtctggagatgaaattatggtgtttgtgg
ggaaactggagtaactggagattgtgagatgatttgtgctcagaaggaca
aacagcaagttctcccatttgtggatcttagattttatataaagcacata
cacacagacagacacacagacacacaccatacatacagagtcacatacac
agaaagacaaacacacacacagacacagacacagacacatatactgtgcc
ttcaatactgctacccaagtgagagtcagtcaactccttccttctcagag
tctggctataaatactatgcttagagtaaatgaattagaaatgcacccca
ggtaatagtgtatggctgcttcaagcccatgacgtgtatgtacaattgaa
caattgccctcactgcagcaagcctttgtaggaggcagagcagggtgata
tggcccttcagatgcagcacgagtgtcacctgttgggtacaccaatgctg
tcaggaggcccatttctgctgcaaacatctaacttgatttaaaaatctac
ctcgtccagagcaagagaaaatctttgctaaacacaattaggatattgtt
cctcccattaagtacaatgagggccatgtatacacaggtagtcatacctg
cacactcaccaacataccgtaaaaacagtctctaggccacatactgagat
ctccactgaaacctcttggcgagatctgcacaatcaatcactctcagtac
aaagtcgtcatatatcctactaagaacagcccaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_18488906_18489956
seq2: B6Ng01-041C08.b_46_1090

seq1  GAATTCATACAGCCTTACCAGCACAAGCCATCACTGTCCATTCACACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACAGCCTTACCAGCACAAGCCATCACTGTCCATTCACACCCA  50

seq1  CACACTCTCCAGATGGTATCAAATTATTCCCAATACTCCAAACTTGAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCTCCAGATGGTATCAAATTATTCCCAATACTCCAAACTTGAACC  100

seq1  TAGATATTCTTGCTAGAGTTCTCTGGAAAAACGAGAGATGGTACCAACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATTCTTGCTAGAGTTCTCTGGAAAAACGAGAGATGGTACCAACCT  150

seq1  TCTGAAGTACTTTGTGTTTAATGATTTCAGAGGAAATCTCATTCAAGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGTACTTTGTGTTTAATGATTTCAGAGGAAATCTCATTCAAGGTC  200

seq1  ACAACAGCTCATTAAAAAAAAATTCCCATATGTAGTTGTAATCTCCAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGCTCATTAAAAAAAAATTCCCATATGTAGTTGTAATCTCCAAGT  250

seq1  AGTTCCATTAAGGGGGAAATGTGCAGGATTTGATTTTCCAGAGACTCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCATTAAGGGGGAAATGTGCAGGATTTGATTTTCCAGAGACTCAAG  300

seq1  AGGAAAAAAAAAAAAAAGCCTTGGTTGTTCATCTCCTCCAGGAATCCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAAAAAAAAAAGCCTTGGTTGTTCATCTCCTCCAGGAATCCCTC  350

seq1  CCCTGCAGACCATCACAGTCCATACTCTGGGTGCTTCATGCCATGAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCAGACCATCACAGTCCATACTCTGGGTGCTTCATGCCATGAAATT  400

seq1  CCAAATTTGGTCCCATCCCTCACTACACCTAAGGGCAAATAACAGGCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTTGGTCCCATCCCTCACTACACCTAAGGGCAAATAACAGGCTAA  450

seq1  CAACCCCTCTGTTTTTAGAAAGCAGAGAGCAGCAGGTCAGACAACTGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCTCTGTTTTTAGAAAGCAGAGAGCAGCAGGTCAGACAACTGGGC  500

seq1  TTCTAGCAAGGAATGCAAATGCTTTCAGTCCAGACAGCCCATCACAACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCAAGGAATGCAAATGCTTTCAGTCCAGACAGCCCATCACAACCT  550

seq1  CAGTGACAGACAGAAGCCATCACAGATCACAGAGAGCCCTGCCTCATAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACAGACAGAAGCCATCACAGATCACAGAGAGCCCTGCCTCATAGG  600

seq1  TGTTCAGAATGACATCATCAGGGCAACACACAGTTGGAATTTATAGTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGAATGACATCATCAGGGCAACACACAGTTGGAATTTATAGTGAT  650

seq1  TACTTGGTAACCGCAGTGCTTCTAGAGGATTCCAAAAACTCCCTTTCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGTAACCGCAGTGCTTCTAGAGGATTCCAAAAACTCCCTTTCAGT  700

seq1  TACACACCTTTGTTTACCTTCTAAAGGCTTCAAATATTGAGCAACTCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACCTTTGTTTACCTTCTAAAGGCTTCAAATATTGAGCAACTCTGC  750

seq1  TAATGTATAAATGTGTGAAAAAGAATCACACAGTT-GGGGCGTCATGGAT  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAATGTATAAATGTGTGAAAAAGAATCACACAGTTGGGGGCGTCATGGAT  800

seq1  GAGGTGTCTGGGGAGAAATGATGGGTTGGCTTCCTGGGTCTGGTTGGCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGTCTGGGGAGAAATGATGGGTTGGCTTCCTGGGTCTGGTTGGCTG  850

seq1  CTTCTGCTTTGTTTTAAGACAGGGTCTTGCCATCTAGCCCAGGCTGCCCA  899
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTTCTGCTTTGTTTAAAGACAGGGTCTTGCCATCTAGCCCAGGCTGCCCA  900

seq1  GAAACACTGGACAAACATCTTGACTCAGATTTCCAAGGCTGGGATCATAG  949
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAAACACTGGACAAACATCTTGACTCAGATTTCCAAGGCT-GGATCATAG  949

seq1  GCACAGGCTCCATGCCCTTTTTATGGGGTATTTAATTCAGAGTTCTCTCT  999
      | ||||||||||||||| ||||||||||||||| |||| |||||| |  |
seq2  G-ACAGGCTCCATGCCC-TTTTATGGGGTATTT-ATTC-GAGTTCCCCTT  995

seq1  TCGTTTGCAACCTATAAGAAATCACATGACCCACAGACAGACTCCAGTAA  1049
      |||||||||||  |||||||||||||||| ||| ||||||| | ||||||
seq2  TCGTTTGCAACTAATAAGAAATCACATGA-CCAAAGACAGA-TTCAGTAA  1043

seq1  TC  1051
      ||
seq2  TC  1045

seq1: chr8_18559378_18560415
seq2: B6Ng01-041C08.g_70_1105 (reverse)

seq1  TAATGGGCTG-TCCTAGTAGGA-ATATGGACGACTTTGTTACTGAGAGTG  48
      || ||||||| || |||||||| |||| |||||||||| |||||||||||
seq2  TATTGGGCTGTTCTTAGTAGGATATAT-GACGACTTTG-TACTGAGAGTG  48

seq1  ATTTGAATTGTGCAGATCTCGCCCAAGAGGTTTCAGTGGAGAATCTCAGT  98
      |||   ||||||||||||||| ||||||||||||||||||| ||||||||
seq2  ATT--GATTGTGCAGATCTCG-CCAAGAGGTTTCAGTGGAG-ATCTCAGT  94

seq1  ATGTGGCCTAGAGACTGTTTTTACGGTATGTTGGTGAGTGTGCAGGTATG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCCTAGAGACTGTTTTTACGGTATGTTGGTGAGTGTGCAGGTATG  144

seq1  ACTACCTGTGTATACATGGCCCTCATTGTACTTAATGGGAGGAACAATAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTGTGTATACATGGCCCTCATTGTACTTAATGGGAGGAACAATAT  194

seq1  CCTAATTGTGTTTAGC-AAGATTTTCTCTTGCTCTGGACGAGGTAGATTT  247
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCTAATTGTGTTTAGCAAAGATTTTCTCTTGCTCTGGACGAGGTAGATTT  244

seq1  TTAAATCAAGTTAGATGTTTGCAGCAG-AATGGGCCTCCTGACAGCATTG  296
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTAAATCAAGTTAGATGTTTGCAGCAGAAATGGGCCTCCTGACAGCATTG  294

seq1  GTGTACCCAACAGGTGACACTCGTGCTGCATCTGAAGGGCCATATCACCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACCCAACAGGTGACACTCGTGCTGCATCTGAAGGGCCATATCACCC  344

seq1  TGCTCTGCCTCCTACAAAGGCTTGCTGCAGTGAGGGCAATTGTTCAATTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGCCTCCTACAAAGGCTTGCTGCAGTGAGGGCAATTGTTCAATTG  394

seq1  TACATACACGTCATGGGCTTGAAGCAGCCATACACTATTACCTGGGGTGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACACGTCATGGGCTTGAAGCAGCCATACACTATTACCTGGGGTGC  444

seq1  ATTTCTAATTCATTTACTCTAAGCATAGTATTTATAGCCAGACTCTGAGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAATTCATTTACTCTAAGCATAGTATTTATAGCCAGACTCTGAGA  494

seq1  AGGAAGGAGTTGACTGACTCTCACTTGGGTAGCAGTATTGAAGGCACAGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAGTTGACTGACTCTCACTTGGGTAGCAGTATTGAAGGCACAGT  544

seq1  ATATGTGTCTGTGTCTGTGTCTGTGTGTGTGTTTGTCTTTCTGTGTATGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTCTGTGTCTGTGTCTGTGTGTGTGTTTGTCTTTCTGTGTATGT  594

seq1  GACTCTGTATGTATGGTGTGTGTCTGTGTGTCTGTCTGTGTGTATGTGCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGTATGTATGGTGTGTGTCTGTGTGTCTGTCTGTGTGTATGTGCT  644

seq1  TTATATAAAATCTAAGATCCACAAATGGGAGAACTTGCTGTTTGTCCTTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAAAATCTAAGATCCACAAATGGGAGAACTTGCTGTTTGTCCTTC  694

seq1  TGAGCACAAATCATCTCACAATCTCCAGTTACTCCAGTTTCCCCACAAAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACAAATCATCTCACAATCTCCAGTTACTCCAGTTTCCCCACAAAC  744

seq1  ACCATAATTTCATCTCCAGACAATATTTTTTTTAAAAAATGTTTTTCAAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAATTTCATCTCCAGACAATATTTTTTTTAAAAAATGTTTTTCAAG  794

seq1  ATTCATATTACTTAAAATACTGAACAGTCTATAGTACAGAGAAAACACAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATATTACTTAAAATACTGAACAGTCTATAGTACAGAGAAAACACAT  844

seq1  TTTATCATCTGATACACAATCAGTATATAGATTAGATAATAACAAAACTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCATCTGATACACAATCAGTATATAGATTAGATAATAACAAAACTG  894

seq1  TCTATTAATGTATAAATTCTTAACAGTAAATCTGCTGTGAGTTGTGGGTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTAATGTATAAATTCTTAACAGTAAATCTGCTGTGAGTTGTGGGTT  944

seq1  GTCTCTGTGGAGGAATGCTTACTGAACACACATGGCCTTACATTCTACCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGTGGAGGAATGCTTACTGAACACACATGGCCTTACATTCTACCC  994

seq1  CAAACACAACCATGACTCAATAACTTGCCTCTGTTTGAATTC  1038
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACAACCATGACTCAATAACTTGCCTCTGTTTGAATTC  1036