BAC Information

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BAC

Clone NameB6Ng01-042D22
Chromosome8 (Build37)
Map Location 19,976,178 - 19,977,218
singlet/doubletdoublet
Overlap geneEG665822
Upstream geneDefb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730, 4930467E23Rik, LOC100041567, LOC547150, LOC100040599
Downstream gene6820431F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042D22.bB6Ng01-042D22.g
ACCDH868677DH868678
length8851,010
definitionDH868677|Mus musculus domesticus DNA, BAC clone: B6Ng01-042D22, 5' end.DH868678|Mus musculus domesticus DNA, BAC clone: B6Ng01-042D22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,976,330 - 19,977,218)(19,976,178 - 19,977,195)
sequence
gaattccgaattaacatccttgcctgtgggcttcttgtacacaccagaaa
aagttccaaacttgtgctcctagttgttctgctgtgctttgtctaaatga
acttttatgagccggctgccatccagtttcacacagatcctctacccaca
atttcacttgggaagaccaagtctgctgtcatgcactactgtcagggtgt
ggtttctggggcgcttatgcttatttttcatacggattttccaggttggc
ttgggcagaatcctcctctgagcaatgaacactacttgcttcccactgaa
ttttttctccaattcacgaactagcctgacatgaattttctggaaagact
taaagctgaggaactggtacaaaaattatggtagctttccgaccaccacc
aacttcaatttccttggttgtggtgatgttgacttcctgcagcagagcct
tgacatctgcgttcatctccagctcgagcagcacctgagagatgccagac
ttggaactcatccggcttctccccatttggcttcacagtcttggcactgg
agctgaacatggcttcatccttacggagtgccaacttataaagagggaca
gctgtcgagagaaccgcaacaagataattttatggttgagagtcctcaca
acaggaggagctgtgttaaaactccaaccactgtcttagatgagagcctg
tagtgagtaaagctgacacaggtggtactaaggaccccctcctcacagtt
tggagcctccccagctcctgtagaactggcttagacctcagtggctacaa
cattgaggctcagctcctctgtccacccaactctgtcttcctccctttct
cacgaatatcttgcttgggggggtagagggggagt
gaattctcagctgtaaaagaatccagatgttctaagatgatttggggggg
atgccaaaaggatgccagatttttacaaagacctgccaagtcttgatgtg
tgctccttaggaaccattctggaagagatgctgggaaatgcacccccccg
ccactccccctctacccccccccccaagcaagatattcgtgagaaaggaa
gacagagttgggtggacagaggagctgagcctcaatgttgtagccactga
ggtctaagccagttctacaggagctggggaggctccaaactgtgaggagg
gggtccttagtaccacctgtgtcagctttactcactacaggctctcatct
aagacagtggttggagttttaacacagctcctcctgttgtgaggactctc
aaccataaaattatcttgttgcggttctctcgacagctgtccctctttat
aagttggcactccgtaaggatgaagccatgttcagctccagtgccaagac
tgtgaagccaaatggggagaagccggatgagttccaagtctggcatctct
caggtgctgctcgagctggagatgaacgcagatgtcaaggctctgctgca
ggaagtcaacatcaccacaaccaaggaaattgaagttggtggtggtcgga
aagctaccataatttttgtaccagttcctcagttttaagtctttccagaa
aattcatgtcaggctagttcgtgaattggagaaaaaattcagtgggaagc
aaatagtgttcattgctcagaggaggattctgcccaagccaacctggaaa
atccgtatgaaaaataagcagaagcgccccagaaaccacaccctgacagt
agtgcatgacagcagacttggtcttcccaagtgaaattgtgggtagagga
tctgtgtgaaactggatggcagccggctcataaagttcatttagacaaag
cacagcagaacaactaggagcacaaggtgggactttttctgtgtgtacaa
gagcccacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_19976330_19977218
seq2: B6Ng01-042D22.b_43_927 (reverse)

seq1  ACTCCCCCTCCACCCCCTCCCCCAAGCAAGATATTCGTGAGAAAGGGAGG  50
      |||||||||| |||    ||||||||||||||||||||||||||||||||
seq2  ACTCCCCCTCTACC----CCCCCAAGCAAGATATTCGTGAGAAAGGGAGG  46

seq1  AAGACAGAGTTGGGTGGACAGAGGAGCTGAGCCTCAATGTTGTAGCCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGAGTTGGGTGGACAGAGGAGCTGAGCCTCAATGTTGTAGCCACT  96

seq1  GAGGTCTAAGCCAGTTCTACAGGAGCTGGGGAGGCTCCAAACTGTGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCTAAGCCAGTTCTACAGGAGCTGGGGAGGCTCCAAACTGTGAGGA  146

seq1  GGGGGTCCTTAGTACCACCTGTGTCAGCTTTACTCACTACAGGCTCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTCCTTAGTACCACCTGTGTCAGCTTTACTCACTACAGGCTCTCAT  196

seq1  CTAAGACAGTGGTTGGAGTTTTAACACAGCTCCTCCTGTTGTGAGGACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGACAGTGGTTGGAGTTTTAACACAGCTCCTCCTGTTGTGAGGACTC  246

seq1  TCAACCATAAAATTATCTTGTTGCGGTTCTCTCGACAGCTGTCCCTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCATAAAATTATCTTGTTGCGGTTCTCTCGACAGCTGTCCCTCTTT  296

seq1  ATAAGTTGGCACTCCGTAAGGATGAAGCCATGTTCAGCTCCAGTGACAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATAAGTTGGCACTCCGTAAGGATGAAGCCATGTTCAGCTCCAGTGCCAAG  346

seq1  ACTGTGAAGCCAAATGGGGAGAAGCCGGATGAGTTCCAAGTCTGGCATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAAGCCAAATGGGGAGAAGCCGGATGAGTTCCAAGTCTGGCATCT  396

seq1  CTCAGGTGCTGCTTGAGCTGGAGATGAACGCAGATGTCAAGGCTCTGCTG  450
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTGCTGCTCGAGCTGGAGATGAACGCAGATGTCAAGGCTCTGCTG  446

seq1  CAGGAAGTCAACATCACCACAACCAAGGAAATTGAAGTTGGTGGTGGTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGTCAACATCACCACAACCAAGGAAATTGAAGTTGGTGGTGGTCG  496

seq1  GAAAGCTACCATAATTTTTGTACCAGTTCCTCAGCTTTAAGTCTTTCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTACCATAATTTTTGTACCAGTTCCTCAGCTTTAAGTCTTTCCAG  546

seq1  AAAATTCATGTCAGGCTAGTTCGTGAATTGGAGAAAAAATTCAGTGGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCATGTCAGGCTAGTTCGTGAATTGGAGAAAAAATTCAGTGGGAA  596

seq1  GCAAGTAGTGTTCATTGCTCAGAGGAGGATTCTGCCCAAGCCAACCTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTAGTGTTCATTGCTCAGAGGAGGATTCTGCCCAAGCCAACCTGGA  646

seq1  AAATCCGTATGAAAAATAAGCAGAAGCGCCCCAGAAACCACACCCTGACA  700
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAATCCGTATGAAAAATAAGCATAAGCGCCCCAGAAACCACACCCTGACA  696

seq1  GTAGTGCATGACAGCAGACTTGGTCTTCCCAAGTGAAATTGTGGGTAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGCATGACAGCAGACTTGGTCTTCCCAAGTGAAATTGTGGGTAGAG  746

seq1  GATCTGTGTGAAACTGGATGGCAGCCGGCTCATAAAAGTTCATTTAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTGTGAAACTGGATGGCAGCCGGCTCATAAAAGTTCATTTAGACA  796

seq1  AAGCACAGCAGAACAACTAGGAGCACAAGGTTGGAACTTTTTCTGGTGTG  850
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAGCACAGCAGAACAACTAGGAGCACAAGTTTGGAACTTTTTCTGGTGTG  846

seq1  TACAAGAAGCCCACAGGCAAGGATGTTAATTCGGAATTC  889
      |||||||||||||||||||||||||||||||||||||||
seq2  TACAAGAAGCCCACAGGCAAGGATGTTAATTCGGAATTC  885

seq1: chr8_19976178_19977195
seq2: B6Ng01-042D22.g_65_1074

seq1  GAATTCTCAGCTGTAAAAGAATCCAGATGTTCTAAGATGATTTGGGGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCTGTAAAAGAATCCAGATGTTCTAAGATGATTTGGGGGGG  50

seq1  ATGCCAAAAGGATGCCAGATTTTTACAAAGACCTGCCAAGTCTTGATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAAAAGGATGCCAGATTTTTACAAAGACCTGCCAAGTCTTGATGTG  100

seq1  TGCTCCTTAGGAACCATTCTGGAAGAGATGCTGGGAAGTGCACCCCCCCG  150
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGCTCCTTAGGAACCATTCTGGAAGAGATGCTGGGAAATGCACCCCCCCG  150

seq1  CCACTCCCCCTCCACCCCCTCCCCCAAGCAAGATATTCGTGAGAAAGGGA  200
      |||||||||||| |||||| |||||||||||||||||||||||||    |
seq2  CCACTCCCCCTCTACCCCCCCCCCCAAGCAAGATATTCGTGAGAA----A  196

seq1  GGAAGACAGAGTTGGGTGGACAGAGGAGCTGAGCCTCAATGTTGTAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACAGAGTTGGGTGGACAGAGGAGCTGAGCCTCAATGTTGTAGCCA  246

seq1  CTGAGGTCTAAGCCAGTTCTACAGGAGCTGGGGAGGCTCCAAACTGTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTCTAAGCCAGTTCTACAGGAGCTGGGGAGGCTCCAAACTGTGAG  296

seq1  GAGGGGGTCCTTAGTACCACCTGTGTCAGCTTTACTCACTACAGGCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGTCCTTAGTACCACCTGTGTCAGCTTTACTCACTACAGGCTCTC  346

seq1  ATCTAAGACAGTGGTTGGAGTTTTAACACAGCTCCTCCTGTTGTGAGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGACAGTGGTTGGAGTTTTAACACAGCTCCTCCTGTTGTGAGGAC  396

seq1  TCTCAACCATAAAATTATCTTGTTGCGGTTCTCTCGACAGCTGTCCCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACCATAAAATTATCTTGTTGCGGTTCTCTCGACAGCTGTCCCTCT  446

seq1  TTATAAGTTGGCACTCCGTAAGGATGAAGCCATGTTCAGCTCCAGTGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTATAAGTTGGCACTCCGTAAGGATGAAGCCATGTTCAGCTCCAGTGCCA  496

seq1  AGACTGTGAAGCCAAATGGGGAGAAGCCGGATGAGTTCCAAGTCTGGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTGAAGCCAAATGGGGAGAAGCCGGATGAGTTCCAAGTCTGGCAT  546

seq1  CTCTCAGGTGCTGCTTGAGCTGGAGATGAACGCAGATGTCAAGGCTCTGC  600
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTCTCAGGTGCTGCTCGAGCTGGAGATGAACGCAGATGTCAAGGCTCTGC  596

seq1  TGCAGGAAGTCAACATCACCACAACCAAGGAAATTGAAGTTGGTGGTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAAGTCAACATCACCACAACCAAGGAAATTGAAGTTGGTGGTGGT  646

seq1  CGGAAAGCTACCATAATTTTTGTACCAGTTCCTCAGCTTTAAGTCTTTCC  700
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CGGAAAGCTACCATAATTTTTGTACCAGTTCCTCAGTTTTAAGTCTTTCC  696

seq1  AGAAAATTCATGTCAGGCTAGTTCGTGAATTGGAGAAAAAATTCAGTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTCATGTCAGGCTAGTTCGTGAATTGGAGAAAAAATTCAGTGGG  746

seq1  AAGCAAGTAGTGTTCATTGCTCAGAGGAGGATTCTGCCCAAGCCAACCTG  800
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAATAGTGTTCATTGCTCAGAGGAGGATTCTGCCCAAGCCAACCTG  796

seq1  GAAAATCCGTATGAAAAATAAGCAGAAGCGCCCCAGAAACCACACCCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCCGTATGAAAAATAAGCAGAAGCGCCCCAGAAACCACACCCTGA  846

seq1  CAGTAGTGCATGACAGCAGACTTGGTCTTCCCAAGTGAAATTGTGGGTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTGCATGACAGCAGACTTGGTCTTCCCAAGTGAAATTGTGGGTAG  896

seq1  AGGATCTGTGTGAAACTGGATGGCAGCCGGCTCATAAAAGTTCATTTAGA  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGGATCTGTGTGAAACTGGATGGCAGCCGGCTCAT-AAAGTTCATTTAGA  945

seq1  CAAAGCACAGCAGAACAACTAGGAGCACAAGGTTGGAACTTTTTCTGGTG  1000
      |||||||||||||||||||||||||||||||| ||| ||||||||| |||
seq2  CAAAGCACAGCAGAACAACTAGGAGCACAAGG-TGGGACTTTTTCT-GTG  993

seq1  TGTACAAGAAGCCCACAG  1018
      |||||||| |||||||||
seq2  TGTACAAG-AGCCCACAG  1010