BAC Information

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BAC

Clone NameB6Ng01-042K16
Chromosome8 (Build37)4 (Build37)
Map Location 43,847,843 - 43,849,056116,626,425 - 116,626,662
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC671994, Zfp353, EG620772, LOC628212
Downstream geneTriml1, LOC622082, EG622117, LOC100039417, Zfp42, Adam26b, Adam26a, EG384813, Adam34, EG384814, LOC100039472, LOC547011, LOC622263
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042K16.bB6Ng01-042K16.g
ACCDH868970DH868971
length1,197255
definitionDH868970|Mus musculus domesticus DNA, BAC clone: B6Ng01-042K16, 5' end.DH868971|Mus musculus domesticus DNA, BAC clone: B6Ng01-042K16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(43,847,843 - 43,849,056)(116,626,425 - 116,626,662)
sequence
gaattctgcagcctttattctgaggctatgagaaaactgcaaccaacata
tctttttaagtcagaaccagcctttatcctatatttttcacaagttatga
atctactcttttatggatgcctccatgtcatttgctgaaatttcccaaca
gatagtttagtttctaatagacctaggtcagctcatttactgtcaatacc
aatacctatttgaccatgatcctgttagtgaatagttgacatattttgta
actttgcaatagaaaatattttaagtgtcatctttacacagaagtagtta
ccaattatgcttaatctacctacctgtctaaacctaatattacctaagag
atagatccaggggtttatctatgaggttactttcagctgtgtaaagaggc
taacagggacagaaacagcacaaaacctattggccccagcatccatcccc
gtctgctttctgactgcagaagtaatatgtccattcccccatgctcttgc
cctccatgttagactatatgtcctcaaattgtgaaccaaaataaatctgt
tttgccttaagttttttttttggtggatattatgtcatagtagtaagaaa
atcaagtaatgcacctattttagaattacttactagtgacggaattgtgt
tttttaaagtgagtgaatcacttgactttatacatacttagcaaactgta
ttttattagtgaatacaaaacttccctcccattagcagtatataaaactc
tttcctcattctttcccatatactttacttctttattttaatcctgtcat
ttacattattacaaacaatatcatttataatcatggcaaaaaattgtgaa
gtatccttcaaactaaatatgtaaagcctaggtgatgtctgcctaaacat
tacactatgtaatgatatgtgtgaatttatacacattttgcttccatggg
gcttttaaaataaaatctaattacaattgaaaatgcaaaacctacttgtg
cacttgaacttagaacagactcttgagtaatctcctcaatctgtttttcc
ccatcataatgccaaggaggcaggggatttcttttgggaggaatgacaaa
tatgtagagatttttccttcaaaggccattcttaggattcagtagggttt
ctgaataaatatccaatgcattcggacacaaaatcttttcatcatga
attttattgcaaataactaaatagacatattagaggaaagaatacctcac
ctgtcatattttgaaggaaaagaaagctcagctttaaactcaaagagaat
tatttcttgaagtatcttaatatttaatacttatgatgccatagggtcag
ccctgaaatcatatacatataaataacattacataaactgattaatttat
atttatacaattaagaacacacacacatacacacacacatacacacacat
acaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_43847843_43849056
seq2: B6Ng01-042K16.b_46_1242

seq1  GAATTCTGCAGCCTTTATTCTGAGGCTATGAGAAAACTGCAACCAACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGCCTTTATTCTGAGGCTATGAGAAAACTGCAACCAACATA  50

seq1  TCTTTTTAAGTCAGAACCAGCCTTTATCCTATATTTTTCACAAGTTATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTAAGTCAGAACCAGCCTTTATCCTATATTTTTCACAAGTTATGA  100

seq1  ATCTACTCTTTTATGGATGCCTCCATGTCATTTGCTGAAATTTCCCAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTCTTTTATGGATGCCTCCATGTCATTTGCTGAAATTTCCCAACA  150

seq1  GATAGTTTAGTTTCTAATAGACCTAGGTCAGCTCATTTACTGTCAATACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTTTAGTTTCTAATAGACCTAGGTCAGCTCATTTACTGTCAATACC  200

seq1  AATACCTATTTGACCATGATCCTGTTAGTGAATAGTTGACATATTTTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTATTTGACCATGATCCTGTTAGTGAATAGTTGACATATTTTGTA  250

seq1  ACTTTGCAATAGAAAATATTTTAAGTGTCATCTTTACACAGAAGTAGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCAATAGAAAATATTTTAAGTGTCATCTTTACACAGAAGTAGTTA  300

seq1  CCAATTATGCTTAATCTACCTACCTGTCTAAACCTAATATTACCTAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTATGCTTAATCTACCTACCTGTCTAAACCTAATATTACCTAAGAG  350

seq1  ATAGATCCAGGGGTTTATCTATGAGGTTACTTTCAGCTGTGTAAAGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATCCAGGGGTTTATCTATGAGGTTACTTTCAGCTGTGTAAAGAGGC  400

seq1  TAACAGGGACAGAAACAGCACAAAACCTATTGGCCCCAGCATCCATCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGGACAGAAACAGCACAAAACCTATTGGCCCCAGCATCCATCCCC  450

seq1  GTCTGCTTTCTGACTGCAGAAGTAATATGTCCATTCCCCCATGCTCTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCTTTCTGACTGCAGAAGTAATATGTCCATTCCCCCATGCTCTTGC  500

seq1  CCTCCATGTTAGACTATATGTCCTCAAATTGTGAACCAAAATAAATCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATGTTAGACTATATGTCCTCAAATTGTGAACCAAAATAAATCTGT  550

seq1  TTTGCCTTAAGTTTTTTTTTTGGTGGATATTATGTCATAGTAGTAAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTTAAGTTTTTTTTTTGGTGGATATTATGTCATAGTAGTAAGAAA  600

seq1  ATCAAGTAATGCACCTATTTTAGAATTACTTACTAGTGACGGAATTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTAATGCACCTATTTTAGAATTACTTACTAGTGACGGAATTGTGT  650

seq1  TTTTTAAAGTGAGTGAATCACTTGACTTTATACATACTTAGCAAACTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAGTGAGTGAATCACTTGACTTTATACATACTTAGCAAACTGTA  700

seq1  TTTTATTAGTGAATACAAAACTTCCCTCCCATTAGCAGTATATAAAACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTAGTGAATACAAAACTTCCCTCCCATTAGCAGTATATAAAACTC  750

seq1  TTTCCTCATTCTTTCCCATATACTTTACTTCTTTATTTTAATCCTGTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCATTCTTTCCCATATACTTTACTTCTTTATTTTAATCCTGTCAT  800

seq1  TTACATTATTACAAACAATATCATTTATAATCATGGCAAAAAATTGTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTATTACAAACAATATCATTTATAATCATGGCAAAAAATTGTGAA  850

seq1  GTATCCTTCAAACTAAATATGTAAAGCCTAGGTGATGTCTGCCTAAACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCTTCAAACTAAATATGTAAAGCCTAGGTGATGTCTGCCTAAACAT  900

seq1  TACACTATGTAATGATATGTGTGAATTTATACACATTTTGCTTCCATGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTATGTAATGATATGTGTGAATTTATACACATTTTGCTTCCATGGG  950

seq1  GCTTTTAAAATAAAATCTAATTACAATTGAAAAATGCAAAACCTACTTGT  1000
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCTTTTAAAATAAAATCTAATTACAATTG-AAAATGCAAAACCTACTTGT  999

seq1  GCACTTGAACTTAGAACAGACTCTTGAGTAATCT-CTCAATCTGTTTTTC  1049
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCACTTGAACTTAGAACAGACTCTTGAGTAATCTCCTCAATCTGTTTTTC  1049

seq1  CCCATCATTAATGCAAAGGAAGGCAGGGGGATTTCCTTTGGGAGGAATGA  1099
      ||||||| |||||| |||| ||||| ||||||||| ||||||||||||||
seq2  CCCATCA-TAATGCCAAGG-AGGCA-GGGGATTTCTTTTGGGAGGAATGA  1096

seq1  C-AATATGTAGAGATTTTCTTCTTCACAAGGCATCTTTTAAGATTTCAGG  1148
      | |||||||||||||||| | ||||| |||||   | ||| || |||| |
seq2  CAAATATGTAGAGATTTT-TCCTTCA-AAGGCCATTCTTAGGA-TTCA-G  1142

seq1  TAGGGTTTCTGAATAAATATCCACAAGTGCATTCAGACAACCAAAATATT  1198
      ||||||||||||||||||||||   | ||||||| ||||  |||||   |
seq2  TAGGGTTTCTGAATAAATATCC---AATGCATTCGGACA--CAAAA---T  1184

seq1  CTTTTCATTCACATGA  1214
      ||||||||   |||||
seq2  CTTTTCAT---CATGA  1197

seq1: chr4_116626425_116626662
seq2: B6Ng01-042K16.g_193_329 (reverse)

seq1  TGTGTATGTGTGTGTGTAAACCTGAGGAAGTGTAAACCTGAGGAAAGTGT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GTGTGTGTTTGTGTGTGTGTAAACCTGAGGAAAGTTTGTGTGTGTATGTG  100
           ||| | ||||||||||             | ||||||||||||||
seq2  -----TGTGTATGTGTGTGTA-------------TGTGTGTGTGTATGTG  32

seq1  TGTGTGTAAACCTGAGGAAGCAGCATGACAG-AAAAATATGCATATGATT  149
      |||||||                | | |  | | ||||||  ||    | 
seq2  TGTGTGT---------------TCTTAATTGTATAAATATAAAT----TA  63

seq1  ATTTGTTTATCCTCTCTCTCCAATTAGTCCAAAGTCTCCAAGAGGACAAG  199
      ||  |||||       | |    ||| |   | || |  | ||   | ||
seq2  ATCAGTTTA-------TGTAATGTTATTTATATGTAT--ATGATTTC-AG  103

seq1  GACTGCATCAGTTTTGTTTATCCCTAAGTATTAAATATT  238
      | |||   |  | | |  |   | |||||||||||||||
seq2  GGCTG--ACCCTATGGCAT---CATAAGTATTAAATATT  137