BAC Information

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BAC

Clone NameB6Ng01-043D14
Chromosome8 (Build37)
Map Location 101,648,747 - 101,781,574
singlet/doubletdoublet
Overlap geneCdh8
Upstream geneLOC100041173, EG636915
Downstream geneA330008L17Rik, LOC667531, LOC100042069, LOC436054, LOC100042078
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043D14.bB6Ng01-043D14.g
ACCDH869350DH869351
length1,1141,127
definitionDH869350|Mus musculus domesticus DNA, BAC clone: B6Ng01-043D14, 5' end.DH869351|Mus musculus domesticus DNA, BAC clone: B6Ng01-043D14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,780,441 - 101,781,574)(101,648,747 - 101,649,889)
sequence
gaattcaaacagaatctagaggtaggagcagatgcagaagtctgaaagat
catgcttactggcttgttattcctggcttggtcagcctgccttcttccag
cacccaggacctcaagcctaggggaggcactccccacagtgatcttgcca
tcccacctttctcatcaatcaagaaaatatcatccagtcttgcctacagg
ttactcctatggaggcattttctcgattaaaatttcttctttccagatga
ccctagcttgagtcaagttgacataaagataagccaacatactcagatag
aagggatcaaaaatcttcaggctgtaactgacattgcctgctataaaaca
ggatttaatgcagaacatgaagtgctaacaggcattgcatagaatgaaac
agagaatgggactactctactggggagagtgagatgtatatcatgaaagc
ctcacattaaacatacaagtccacatatcttttaatcttttttacacatc
taacttattatctttaatataagattttttttactgttacatattctagt
acatacacagcaaagatacttagtagatactcaatagctattagttcaaa
agtaatggcaatgctccatactaaatacccaagcaagtgttctgtaaata
gaaacattaaggacattgcagtgccgtggtcagagttattatcatcatca
tcagtacctaggtagagaagtacactggaggcctttctctcattttattt
ttctacacttatgagacaaagctttttttttaaaaaaagttgattttttc
accaagaaaatacagttgaggacctgagagtcttacagaaaatgggccat
gaagctgtctgtgccaacttcataagctggaccacaaactctttaggaga
gctaacatgtgatgcttccagaagaataaagcacatatacaaaatacctg
tgtgctttgttgaaaacacattggatttaagtagcaggcttctttcactt
cccattcagtcactcacacaaagctgtgcagttatatttaattccgtgaa
atcttagtatgtcattctgtgggactcagaatattgcgatgctctgagcc
atttcccagcattc
gaattcactctgtagatcaggacggcattggactcagaaatcttcctgcc
tcttcctcccaagtgctgggattaaaaggcatgtgccaccactgcctggc
aaaattgattttcttattgatcactttttttctaataatacttaattgtg
cacatgggaaaaatccatgttaggtaaatacaacatctacagtattgttc
catctcagtgtgttttgtcatttgttgttatgaaacttttccttgaatta
cagtaatatttctcctctgttgactcttgaccttttttgtttgtttgttt
gtttgtttgtctgaattggtatacgtcttgtattccttttaacctttatg
tgtacctattacttaacatccatatatgaatagaaatgaggcttacatat
tgccttctttataaaatctgccctgataattggtctagtagacgaattta
tagcagtctatttatagcaatgtgaaggttttccatgacttcagggtaga
gatgtttgaatttcacattgtacttcaaatttctaagacctttcccatca
ggtttttcataataaccccacagttgtacagctgtttcctctacatcgga
acattccttcctggaaagagggggcagtacagtaaaatcaggaaagtgag
tcagacttaggaagctctgtgcattctaaacatcccagatcttcctcaag
gttgcacaagcagtaacacttgctaaagagattccctcagttcagctgct
gcctgccagtcaggcattcagggtgtttcagtgaagtaacctaaagagtc
aacattcaacctctggtgggctttttagttatgatgttgcctttaagcca
tccacgttcctatcagcatacccacatccattcttctgcaggtgatctca
atatagtcacttgtttgttagttttgtgttgtttttggtcatctcagttt
tctatgaagaatgaacactttttctcctttctttccaggatctgtcataa
acatcttgtatcaattctccttctgatcaaatgtttaatatttcattttt
tcatataatttgaaatagtgttataatattattctagaatgctaatttat
gttgataatcaatagatgctgaatgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_101780441_101781574
seq2: B6Ng01-043D14.b_46_1159 (reverse)

seq1  GAATGCTGGGGAAAAATGGCTCAAGGAGCATCGCAAATATCTGAGTTCCC  50
      ||||||||||   ||||||||||  |||||||||||   |||||| ||||
seq2  GAATGCTGGG---AAATGGCTCA--GAGCATCGCAATATTCTGAG-TCCC  44

seq1  ACAGAATGACATACTTAAGGATTTCACGGAATTTAAAATATAACTGCACA  100
      |||||||||||||||  | ||||||||||||||  |||||||||||||||
seq2  ACAGAATGACATACT--AAGATTTCACGGAATT--AAATATAACTGCACA  90

seq1  GGCTTTTGTGTGGAGTGACTGAATGGGAAGTGAAAGAAGCCTTGCCTACC  150
      |   ||||||| ||||||||||||||||||||||||||||||   ||| |
seq2  G--CTTTGTGT-GAGTGACTGAATGGGAAGTGAAAGAAGCCT--GCTA-C  134

seq1  TTAAATCCAATTGTGTTTTTCAACAAAGCACACAGGTATTTTGTATATGT  200
      |||||||||| |||| ||||||||||||||||||||||||||||||||||
seq2  TTAAATCCAA-TGTG-TTTTCAACAAAGCACACAGGTATTTTGTATATGT  182

seq1  GCTTTATTCCTTCTGGAAGCATCACATGTTAGCTCTCCTAAAGAGTTTGT  250
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATT-CTTCTGGAAGCATCACATGTTAGCTCTCCTAAAGAGTTTGT  231

seq1  GGTCCAGCTTATGAAAGTTGGCACAGACAGCTTCATGGCCCATTTTCTGT  300
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGTCCAGCTTATG-AAGTTGGCACAGACAGCTTCATGGCCCATTTTCTGT  280

seq1  AAGACTCTCAGGTCCTCAACTGTATTTTCTTGGTGAAAAAATCAACTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCTCAGGTCCTCAACTGTATTTTCTTGGTGAAAAAATCAACTTTT  330

seq1  TTTAAAAAAAAAGCTTTGTCTCATAAGTGTAGAAAAATAAAATGAGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAAAAAGCTTTGTCTCATAAGTGTAGAAAAATAAAATGAGAGAA  380

seq1  AGGCCTCCAGTGTACTTCTCTACCTAGGTACTGATGATGATGATAATAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCCAGTGTACTTCTCTACCTAGGTACTGATGATGATGATAATAAC  430

seq1  TCTGACCACGGCACTGCAATGTCCTTAATGTTTCTATTTACAGAACACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCACGGCACTGCAATGTCCTTAATGTTTCTATTTACAGAACACTT  480

seq1  GCTTGGGTATTTAGTATGGAGCATTGCCATTACTTTTGAACTAATAGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGTATTTAGTATGGAGCATTGCCATTACTTTTGAACTAATAGCTA  530

seq1  TTGAGTATCTACTAAGTATCTTTGCTGTGTATGTACTAGAATATGTAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTATCTACTAAGTATCTTTGCTGTGTATGTACTAGAATATGTAACA  580

seq1  GTAAAAAAAATCTTATATTAAAGATAATAAGTTAGATGTGTAAAAAAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAAAATCTTATATTAAAGATAATAAGTTAGATGTGTAAAAAAGAT  630

seq1  TAAAAGATATGTGGACTTGTATGTTTAATGTGAGGCTTTCATGATATACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGATATGTGGACTTGTATGTTTAATGTGAGGCTTTCATGATATACA  680

seq1  TCTCACTCTCCCCAGTAGAGTAGTCCCATTCTCTGTTTCATTCTATGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTCTCCCCAGTAGAGTAGTCCCATTCTCTGTTTCATTCTATGCAA  730

seq1  TGCCTGTTAGCACTTCATGTTCTGCATTAAATCCTGTTTTATAGCAGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTTAGCACTTCATGTTCTGCATTAAATCCTGTTTTATAGCAGGCA  780

seq1  ATGTCAGTTACAGCCTGAAGATTTTTGATCCCTTCTATCTGAGTATGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGTTACAGCCTGAAGATTTTTGATCCCTTCTATCTGAGTATGTTG  830

seq1  GCTTATCTTTATGTCAACTTGACTCAAGCTAGGGTCATCTGGAAAGAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATCTTTATGTCAACTTGACTCAAGCTAGGGTCATCTGGAAAGAAGA  880

seq1  AATTTTAATCGAGAAAATGCCTCCATAGGAGTAACCTGTAGGCAAGACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAATCGAGAAAATGCCTCCATAGGAGTAACCTGTAGGCAAGACTG  930

seq1  GATGATATTTTCTTGATTGATGAGAAAGGTGGGATGGCAAGATCACTGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATATTTTCTTGATTGATGAGAAAGGTGGGATGGCAAGATCACTGTG  980

seq1  GGGAGTGCCTCCCCTAGGCTTGAGGTCCTGGGTGCTGGAAGAAGGCAGGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGCCTCCCCTAGGCTTGAGGTCCTGGGTGCTGGAAGAAGGCAGGC  1030

seq1  TGACCAAGCCAGGAATAACAAGCCAGTAAGCATGATCTTTCAGACTTCTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAAGCCAGGAATAACAAGCCAGTAAGCATGATCTTTCAGACTTCTG  1080

seq1  CATCTGCTCCTACCTCTAGATTCTGTTTGAATTC  1134
      ||||||||||||||||||||||||||||||||||
seq2  CATCTGCTCCTACCTCTAGATTCTGTTTGAATTC  1114

seq1: chr8_101648747_101649889
seq2: B6Ng01-043D14.g_67_1193

seq1  GAATTCACTCTGTAGATCAGGACGGCATTGGACTCAGAAATCTTCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGATCAGGACGGCATTGGACTCAGAAATCTTCCTGCC  50

seq1  TCTTCCTCCCAAGTGCTGGGATTAAAAGGCATGTGCCACCACTGCCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCCCAAGTGCTGGGATTAAAAGGCATGTGCCACCACTGCCTGGC  100

seq1  AAAATTGATTTTCTTATTGATCACTTTTTTTCTAATAATACTTAATTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGATTTTCTTATTGATCACTTTTTTTCTAATAATACTTAATTGTG  150

seq1  CACATGGGAAAAATCCATGTTAGGTAAATACAACATCTACAGTATTGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGGAAAAATCCATGTTAGGTAAATACAACATCTACAGTATTGTTC  200

seq1  CATCTCAGTGTGTTTTGTCATTTGTTGTTATGAAACTTTTCCTTGAATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCAGTGTGTTTTGTCATTTGTTGTTATGAAACTTTTCCTTGAATTA  250

seq1  CAGTAATATTTCTCCTCTGTTGACTCTTGACCTTTTTTGTTTGTTTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATATTTCTCCTCTGTTGACTCTTGACCTTTTTTGTTTGTTTGTTT  300

seq1  GTTTGTTTGTCTGAATTGGTATACGTCTTGTATTCCTTTTAACCTTTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTCTGAATTGGTATACGTCTTGTATTCCTTTTAACCTTTATG  350

seq1  TGTACCTATTACTTAACATCCATATATGAATAGAAATGAGGCTTACATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTATTACTTAACATCCATATATGAATAGAAATGAGGCTTACATAT  400

seq1  TGCCTTCTTTATAAAATCTGCCCTGATAATTGGTCTAGTAGACGAATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCTTTATAAAATCTGCCCTGATAATTGGTCTAGTAGACGAATTTA  450

seq1  TAGCAGTCTATTTATAGCAATGTGAAGGTTTTCCATGACTTCAGGGTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGTCTATTTATAGCAATGTGAAGGTTTTCCATGACTTCAGGGTAGA  500

seq1  GATGTTTGAATTTCACATTGTACTTCAAATTTCTAAGACCTTTCCCATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTGAATTTCACATTGTACTTCAAATTTCTAAGACCTTTCCCATCA  550

seq1  GGTTTTTCATAATAACCCCACAGTTGTACAGCTGTTTCCTCTACATCGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTCATAATAACCCCACAGTTGTACAGCTGTTTCCTCTACATCGGA  600

seq1  ACATTCCTTCCTGGAAAGAGGGGGCAGTACAGTAAAATCAGGAAAGTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCTTCCTGGAAAGAGGGGGCAGTACAGTAAAATCAGGAAAGTGAG  650

seq1  TCAGACTTAGGAAGCTCTGTGCATTCTAAACATCCCAGATCTTCCTCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTTAGGAAGCTCTGTGCATTCTAAACATCCCAGATCTTCCTCAAG  700

seq1  GTTGCACAAGCAGTAACACTTGCTAAAGAGATTCCCTCAGTTCAGCTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCACAAGCAGTAACACTTGCTAAAGAGATTCCCTCAGTTCAGCTGCT  750

seq1  GCCTGCCAGTCAGGCATTCAGGGTGTTTCAGTGAAGTAACCTAAAGAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCAGTCAGGCATTCAGGGTGTTTCAGTGAAGTAACCTAAAGAGTC  800

seq1  AACATTCAACCTCTGGTGGGCTTTTTAGTTATGATGTTGCCTTTAAGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCAACCTCTGGTGGGCTTTTTAGTTATGATGTTGCCTTTAAGCCA  850

seq1  TCCACGTTCCTATCAGCATACCCACATCCATTCTTCTGCAGGTGATCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACGTTCCTATCAGCATACCCACATCCATTCTTCTGCAGGTGATCTCA  900

seq1  ATATAGTCACTTGTTTGTTAGTTTTGTGTTGTTTTTGGTCAATCTCAGTT  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATATAGTCACTTGTTTGTTAGTTTTGTGTTGTTTTTGGTC-ATCTCAGTT  949

seq1  TTCTATGAAGAATGAACAC-TTTTCTCCTTTCTTTCCAGGATCTGTCATA  999
      ||||||||||||||||||| ||||||||||||||||||||||||||||| 
seq2  TTCTATGAAGAATGAACACTTTTTCTCCTTTCTTTCCAGGATCTGTCAT-  998

seq1  AAACATCTTGTATCAATTCTCCTTCTGATCAAATGTTTTAATTATTTCAT  1049
      ||||||||||||||||||||||||||||||||||||||  | ||||||||
seq2  AAACATCTTGTATCAATTCTCCTTCTGATCAAATGTTT--AATATTTCAT  1046

seq1  TTTTTCATTATAATTTTGAAATAAGTGTATTAATATTATTCTAGGAAAAT  1099
      ||||||| ||||| |||||||| |||||  ||||||||||||||   |||
seq2  TTTTTCA-TATAA-TTTGAAAT-AGTGTTATAATATTATTCTAG---AAT  1090

seq1  GCTAAATATAATGTTGATAAATCAATAGATAGCTGATAGATGAT  1143
      |||||   | |||||||| ||||||||||| |||||   |||||
seq2  GCTAA--TTTATGTTGAT-AATCAATAGAT-GCTGA---ATGAT  1127