BAC Information

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BAC

Clone NameB6Ng01-044K22
Chromosome8 (Build37)
Map Location 66,447,503 - 66,566,153
singlet/doubletdoublet
Overlap geneTll1
Upstream geneSpock3, LOC384831, EG244495
Downstream geneLOC100040989, Cpe, Sc4mol, Klhl2, LOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044K22.bB6Ng01-044K22.g
ACCDH870366DH870367
length1,2081,153
definitionDH870366|Mus musculus domesticus DNA, BAC clone: B6Ng01-044K22, 5' end.DH870367|Mus musculus domesticus DNA, BAC clone: B6Ng01-044K22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,564,936 - 66,566,153)(66,447,503 - 66,448,689)
sequence
gaattcagtataacttcattttgcttaatagaggctttgattctcacaga
atttgctgaaaatagtggaaaaatatatttttttcataaaacactttccg
gtccccagttgttatttaacatctaaacatatctttcttagaagcacatg
gtataatgttagcagattcttctaagtctccttgcaacagccatgtatca
aggaccctgggtcgttcggtaactgtgctaagttatgtgcttctgacctc
gggcattttcattctcttcaatgattcctttctctgcctggctcatcaga
ataagcatcactcattcctactttagatttactttgttgtgcaaacatag
tgtctgttttgctgatgatataaatatttatatcatcccagactgttttt
atagctctgttttacgtttccagagtcattatctttctttctttaacaca
agatgtgcagagtcatttataatttattgagtatttgaagagatgagggt
tctcatgctgtgtgttactcctcctcagatgcagggaatgtctgttttga
gtgctatacccttcccggggaagagagggtcttttagacaattgaatgaa
cattgcaaaaaccggggtggggggaagcaattctcagagactggaatcca
gctaggttcatagggtgcatagtatgtcccttgccaaagttccaggaaaa
ctaatggaattatgtccattgacctgaagcatagaaagtgtgtagattac
agtttgtaagttcaggtcactggcacctatttccaaagactaagaaaggg
cttagaaagtgaaaactgtacaatcacccttttagaaatcttttcatagg
agtgaagaaaacagagaaacaccttgtatagaacattctggaaaatgagt
gtatttttaaaagatttatttatgtttacattatgtgtatgagtgtttgt
ctatatggatgtctgtacgtgtgattccccagtactcacaaagctggagt
gtatccccactcctaagctgggttcagaggtttgagaagccacagtgttg
ggttcctacgactaaacctatgtcctctgcaagagttagccaggtattct
taagctttggagctcaccacctctgcctctaaaaggttcctcttcattct
tggcctttctatatcggaattgctgatatacatttgaaataccttaattg
ggctgtat
gaattcagaggaaactttaaattcatgagaaggataaaatacatatttga
gtcaaaatttggacagctctaaaggaaataaaacatcagttaaaaattca
agtaactaggaatatgggaccatgatgcaatgcttgcccagaattacaaa
aaatacttatcaactgaaaaaagtgctaattcttataagttggctaatgg
gaagtttcaaattaaggcacaatttcaacaatgcagtgtatttcaaccct
atgttctatgttattcagagaaatgtagaaaagcccatttctcttgcact
gataacaagtacctagcactgcctcaaaatgtattgaaatggaatagtaa
tttaaccaatttgtaatcatgctgtttgctgggcatttgtgtgggtactg
aatattgaactagttaaaacataaataccatctgttgtaaagaaaagttt
ccttgatagggtatgagactaccattatatgtgggtataaagagaaatat
ttatatattgttgttcaggatcatgctgatttattaaattgataatggta
gattcctatccaataattgtgactttgtgagcactaagtaattagctagg
tttctagtactaagcaagatatctctctagttggtcagttcttacgtcta
gttggagagctatagattatacactgaacccctaaggttattatatcatg
ctagttttgtatgtgattaatagatatcatagtcctgaaaatatacatac
aagcagcattgtatcaagtgaacacgatctattaataaaatgaatttgaa
ggagagtagaaagggatacatgggaggatttgggcaatgtaaaaggaagg
gggaaatgttgagattatattgcaataaatgaaatgaattaaactaatta
aatatataaagtttttttgtagcccaaattgacactattatcacccttca
ataatactaagtctcaatctggtttgggtatacaggtttatgactttagc
tttttatagttgaaaaaaatcttcggttaccaattattactgtaatgctt
caggaaagtcagttataatcatgatatctcatcatgacagagaatcctgc
tgatccagcactcagaggtaggaccatgagtcaaggcagggtgcatcaat
gta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_66564936_66566153
seq2: B6Ng01-044K22.b_45_1252 (reverse)

seq1  ATACAAACCCAATTAAGGTAATATCAAAATGTAATATACAACAATTCAGA  50
      |||| | |||||||||||| || || |||||| |||| || |||||| ||
seq2  ATAC-AGCCCAATTAAGGT-ATTTC-AAATGT-ATAT-CAGCAATTCCGA  45

seq1  ATAAGAAAGGCAAAGAAATGAAAGAGGGAAACATTATTAAGAGGCAGGAG  100
         |||||||| ||| |||| ||||||  ||| |  || ||||||||  |
seq2  TATAGAAAGGCCAAG-AATG-AAGAGG--AACCT--TTTAGAGGCAGAGG  89

seq1  TGGTGAGCT-CAAAGCTTAAGAATA-CTTGCT-ACTCTTGCAGAGGACAT  147
      ||||||||| ||||||||||||||| || ||| |||||||||||||||||
seq2  TGGTGAGCTCCAAAGCTTAAGAATACCTGGCTAACTCTTGCAGAGGACAT  139

seq1  AGGTTTAGTCGTAGGAACCC-ACACTGTGGC-TCTCAAACCCTCTGAACT  195
      |||||||||||||||||||| |||||||||| ||||||| ||||||||| 
seq2  AGGTTTAGTCGTAGGAACCCAACACTGTGGCTTCTCAAA-CCTCTGAAC-  187

seq1  CCAGCTTAGGAGT-GTGATACCACCTCCAGCCTTTGTGAGTACTGGGGAA  244
      ||||||||||||| | |||||   |||||| |||||||||||||||||||
seq2  CCAGCTTAGGAGTGGGGATAC--ACTCCAG-CTTTGTGAGTACTGGGGAA  234

seq1  TCACACGTACAGACATCCATATAGACAAACACTCATACACATAATGTAAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACGTACAGACATCCATATAGACAAACACTCATACACATAATGTAAA  284

seq1  CATAAATAAATCTTTTTAAAAATACACTCATTTTCCAGAATGTTCTATAC  344
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CATAAATAAATC-TTTTAAAAATACACTCATTTTCCAGAATGTTCTATAC  333

seq1  AAGGTGTTTCTCTGTTTTCTTCACTCCTATGAAAAGATTTCTAAAAGGGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTTTCTCTGTTTTCTTCACTCCTATGAAAAGATTTCTAAAAGGGT  383

seq1  GATTGTACAGTTTTCACTTTCTAAGCCC-TTCTTAGTCTTTGGAAATAGG  443
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GATTGTACAGTTTTCACTTTCTAAGCCCTTTCTTAGTCTTTGGAAATAGG  433

seq1  TGCCAGTGACCTGAACTTACAAACTGTAATCTACACACTTTCTATGCTTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTGACCTGAACTTACAAACTGTAATCTACACACTTTCTATGCTTC  483

seq1  AGGTCAATGGACATAATTCCATTAGTTTTCCTGGAACTTTGGCAAGGGAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAATGGACATAATTCCATTAGTTTTCCTGGAACTTTGGCAAGGGAC  533

seq1  ATACTATGCACCCTATGAACCTAGCTGGATTCCAGTCTCTGAGAATTGCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATGCACCCTATGAACCTAGCTGGATTCCAGTCTCTGAGAATTGCT  583

seq1  TCCCCCCACCCCGGTTTTTGCAATGTTCATTCAATTGTCTAAAAGACCCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCACCCCGGTTTTTGCAATGTTCATTCAATTGTCTAAAAGACCCT  633

seq1  CTCTTCCCCGGGAAGGGTATAGCACTCAAAACAGACATTCCCTGCATCTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCCCGGGAAGGGTATAGCACTCAAAACAGACATTCCCTGCATCTG  683

seq1  AGGAGGAGTAACACACAGCATGAGAACCCTCATCTCTTCAAATACTCAAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGTAACACACAGCATGAGAACCCTCATCTCTTCAAATACTCAAT  733

seq1  AAATTATAAATGACTCTGCACATCTTGTGTTAAAGAAAGAAAGATAATGA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATAAATGACTCTGCACATCTTGTGTTAAAGAAAGAAAGATAATGA  783

seq1  CTCTGGAAACGTAAAACAGAGCTATAAAAACAGTCTGGGATGATATAAAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAAACGTAAAACAGAGCTATAAAAACAGTCTGGGATGATATAAAT  833

seq1  ATTTATATCATCAGCAAAACAGACACTATGTTTGCACAACAAAGTAAATC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATCATCAGCAAAACAGACACTATGTTTGCACAACAAAGTAAATC  883

seq1  TAAAGTAGGAATGAGTGATGCTTATTCTGATGAGCCAGGCAGAGAAAGGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTAGGAATGAGTGATGCTTATTCTGATGAGCCAGGCAGAGAAAGGA  933

seq1  ATCATTGAAGAGAATGAAAATGCCCGAGGTCAGAAGCACATAACTTAGCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGAAGAGAATGAAAATGCCCGAGGTCAGAAGCACATAACTTAGCA  983

seq1  CAGTTACCGAACGACCCAGGGTCCTTGATACATGGCTGTTGCAAGGAGAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACCGAACGACCCAGGGTCCTTGATACATGGCTGTTGCAAGGAGAC  1033

seq1  TTAGAAGAATCTGCTAACATTATACCATGTGCTTCTAAGAAAGATATGTT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGAATCTGCTAACATTATACCATGTGCTTCTAAGAAAGATATGTT  1083

seq1  TAGATGTTAAATAACAACTGGGGACCGGAAAGTGTTTTATGAAAAAAATA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTTAAATAACAACTGGGGACCGGAAAGTGTTTTATGAAAAAAATA  1133

seq1  TATTTTTCCACTATTTTCAGCAAATTCTGTGAGAATCAAAGCCTCTATTA  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCCACTATTTTCAGCAAATTCTGTGAGAATCAAAGCCTCTATTA  1183

seq1  AGCAAAATGAAGTTATACTGAATTC  1218
      |||||||||||||||||||||||||
seq2  AGCAAAATGAAGTTATACTGAATTC  1208

seq1: chr8_66447503_66448689
seq2: B6Ng01-044K22.g_68_1220

seq1  GAATTCAGAGGAAACTTTAAATTCATGAGAAGGATAAAATACATATTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGAAACTTTAAATTCATGAGAAGGATAAAATACATATTTGA  50

seq1  GTCAAAATTTGGACAGCTCTAAAGGAAATAAAACATCAGTTAAAAATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAATTTGGACAGCTCTAAAGGAAATAAAACATCAGTTAAAAATTCA  100

seq1  AGTAACTAGGAATATGGGACCATGATGCAATGCTTGCCCAGAATTACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTAGGAATATGGGACCATGATGCAATGCTTGCCCAGAATTACAAA  150

seq1  AAATACTTATCAACTGAAAAAAGTGCTAATTCTTATAAGTTGGCTAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTTATCAACTGAAAAAAGTGCTAATTCTTATAAGTTGGCTAATGG  200

seq1  GAAGTTTCAAATTAAGGCACAATTTCAACAATGCAGTGTATTTCAACCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTCAAATTAAGGCACAATTTCAACAATGCAGTGTATTTCAACCCT  250

seq1  ATGTTCTATGTTATTCAGAGAAATGTAGAAAAGCCCATTTCTCTTGCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTATGTTATTCAGAGAAATGTAGAAAAGCCCATTTCTCTTGCACT  300

seq1  GATAACAAGTACCTAGCACTGCCTCAAAATGTATTGAAATGGAATAGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACAAGTACCTAGCACTGCCTCAAAATGTATTGAAATGGAATAGTAA  350

seq1  TTTAACCAATTTGTAATCATGCTGTTTGCTGGGCATTTGTGTGGGTACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACCAATTTGTAATCATGCTGTTTGCTGGGCATTTGTGTGGGTACTG  400

seq1  AATATTGAACTAGTTAAAACATAAATACCATCTGTTGTAAAGAAAAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGAACTAGTTAAAACATAAATACCATCTGTTGTAAAGAAAAGTTT  450

seq1  CCTTGATAGGGTATGAGACTACCATTATATGTGGGTATAAAGAGAAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATAGGGTATGAGACTACCATTATATGTGGGTATAAAGAGAAATAT  500

seq1  TTATATATTGTTGTTCAGGATCATGCTGATTTATTAAATTGATAATGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATATTGTTGTTCAGGATCATGCTGATTTATTAAATTGATAATGGTA  550

seq1  GATTCCTATCCAATAATTGTGACTTTGTGAGCACTAAGTAATTAGCTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTATCCAATAATTGTGACTTTGTGAGCACTAAGTAATTAGCTAGG  600

seq1  TTTCTAGTACTAAGCAAGATATCTCTCTAGTTGGTCAGTTCTTACGTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGTACTAAGCAAGATATCTCTCTAGTTGGTCAGTTCTTACGTCTA  650

seq1  GTTGGAGAGCTATAGATTATACACTGAACCCCTAAGGTTATTATATCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGAGCTATAGATTATACACTGAACCCCTAAGGTTATTATATCATG  700

seq1  CTAGTTTTGTATGTGATTAATAGATATCATAGTCCTGAAAATATACATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTTGTATGTGATTAATAGATATCATAGTCCTGAAAATATACATAC  750

seq1  AAGCAGCATTGTATCAAGTGAACACGATCTATTAATAAAATGAATTTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCATTGTATCAAGTGAACACGATCTATTAATAAAATGAATTTGAA  800

seq1  GGAGAGTAGAAAGGGATACATGGGAGGATTTGGGCAATGTAAAAGGAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTAGAAAGGGATACATGGGAGGATTTGGGCAATGTAAAAGGAAGG  850

seq1  GGGAAATGTTGAGATTATATTGCAATAAAATGAAATGAAATTAAACTAAA  900
      |||||||||||||||||||||||||| |||||||||| ||||||||||| 
seq2  GGGAAATGTTGAGATTATATTGCAAT-AAATGAAATG-AATTAAACTAAT  898

seq1  TTAAAATAATAATAAAGTATTTTTTGTAGCCCAAATTGAACACTATTATC  950
      | || ||    ||||||| ||||||||||||||||||| |||||||||||
seq2  TAAATAT----ATAAAGT-TTTTTTGTAGCCCAAATTG-ACACTATTATC  942

seq1  ACCCTTTCAATAAATACTAAGTCTCAAATCTGGTTTGGGTATAACAGGGT  1000
      |||| |||||| ||||||||||||| |||||||||||||||| ||| |||
seq2  ACCC-TTCAAT-AATACTAAGTCTC-AATCTGGTTTGGGTAT-ACA-GGT  987

seq1  TTATGACTTTAGCTTTTTATAGGTTGAAAAAAAATTCTTCGGTTACCAAA  1050
      ||||||||||||||||||||| |||||||||||  |||||||||||| ||
seq2  TTATGACTTTAGCTTTTTATA-GTTGAAAAAAA--TCTTCGGTTACC-AA  1033

seq1  TTATTACTGTTAATGCTTCAAGAAAGTCAGTTATAAATTCAATGTATATC  1100
      ||||||||| |||||||||| |||||||||||||||  || ||| |||||
seq2  TTATTACTG-TAATGCTTCAGGAAAGTCAGTTATAA--TC-ATG-ATATC  1078

seq1  TCATCATTTTTACCAGAGAATCTCTGCTGAATCCAGCACTCAGGAGGTAG  1150
      ||||||    |  ||||||||| |||||| |||||||||||| |||||||
seq2  TCATCA----TGACAGAGAATC-CTGCTG-ATCCAGCACTCA-GAGGTAG  1121

seq1  GACGCATGAAAGTACAGAGGCA-GGTGCAGCCAATGTA  1187
      ||| ||||  ||| || ||||| ||||||  |||||||
seq2  GAC-CATG--AGT-CA-AGGCAGGGTGCA-TCAATGTA  1153