BAC Information

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BAC

Clone NameB6Ng01-044M17
Chromosome8 (Build37)
Map Location 92,522,516 - 92,621,613
singlet/doubletdoublet
Overlap genenone
Upstream geneSall1, LOC100041089, EG625801, EG384862
Downstream geneTox3, LOC100041133, Chd9, LOC100041156, EG626231, Rbl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044M17.bB6Ng01-044M17.g
ACCDH870446DH870447
length1,169815
definitionDH870446|Mus musculus domesticus DNA, BAC clone: B6Ng01-044M17, 5' end.DH870447|Mus musculus domesticus DNA, BAC clone: B6Ng01-044M17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,522,516 - 92,523,706)(92,620,625 - 92,621,613)
sequence
gaattcataatcagggagggtattagaaacgggtgtgggagccaccagtg
gtaggcacagtgagttgtctcagaggaaaagacagcaaggctggtattca
cagacaatacactaaatgggaaccatgtaccttcagcagctcatggcctc
agtctccccagccgcacattgctaagggaaggtttcagacgcgctaccct
tacttgaaacgcatggggacatccaaaggagaagctgaacgaacaggctc
cgcagcacttctcctttccttcttcattcgctttcagtattaagattgag
gcattgactgtgagctattcttcctgcaggatagagtggaatattgcaaa
acgcatttgcaagcagcctaaatcatgattgacaaaacgagatttgttaa
tacaatggtttgaggcacttgacagaaatttttgtcaacagtgtagatta
agggattccgggggaaaaaatgaaatttgcagatgaaatggctttgatgt
ttctcctgaaaagcattttgttgacagactggatcagagtgaagaaaaaa
aatgtgcattttctcaatgcgtgcgttttaagtctttgacaaaacacgca
ttagtcctgctgctcgggatcatttgtcacctactctattggctttgcct
ctaaccacaaaggggggtaggatgtgagcagaaaaaaaaataaaacaaaa
taaacctactaagatgggtcccgaaatgatggggccccttccggtaattt
ccccaagatcccctcacccccatgaggaaatgtcttctgctatcaagcca
cttagtttaggtaataagcaggagaaagtacaagaaggtttctaagccaa
taattctcaaggcatgatagccagactagcaagtacccatggaaatcact
caagcctacagctgcatgaaggtagggaacagaaacccacctctacataa
gccccgtcgattatttaagatatttaacttatttagatatgcgcaggtgt
gttgatttgagcatagacagagaatggattgttcacatacttgaatatta
gcttattttatgtcaaatatggctgggttcagagttcatcatcaatgctt
tcaagggcccattggcactccctttatgccgcattctctatcatggcaat
atgtcacacgcttcaggat
gaattcaggctggagaactgttggccttaaacattaatcactggcctgct
gagggagataagatattaataacacaaactctcaacttccctgtgaaggg
gaaattcatgaacattaacgtctcctccctctgattattatgctggagag
agagacagacagagagagagagagagagagagagagagagagaatatgaa
tgcagcagagaaacatggccagagaggatcagagccagtgttttgattag
gaagtggttgctatgaaaaatcatgtcaaatataacaacaacaacaacaa
caacaacacatatgaagagaggctgtgtgtgtgtgtggtttccttataca
gtattgtctgaagactgtaaatgtgtgtacttgagaacatataaactatt
tcagacaggtttactattaaagttacgttaaatccattgattgccattat
catcgctgtgcatgtgttttgaagttgggcttcatacatccagtgctggc
ctcagcatgttatggagtccagcgtgcctcaaactttggaactgatgatc
ctcttctctaaacctcctcagtgctgggagtcttcactctctccaaaaca
ctctggttcctctctacaggactcagggtgcgttcgagaggcccagggca
ctcatattccagaacctcccttacccagcagacagatggtgctttgttcc
tgattcatcctcactttcctatctatcaaacatctagaaacacaatgcat
cttataataattgctttagaagacagaaggacgggtacggggggagagag
agggagaaaggaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_92522516_92523706
seq2: B6Ng01-044M17.b_46_1214

seq1  GAATTCATAATCAGGGAGGGTATTAGAAACGGGTGTGGGAGCCACCAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATCAGGGAGGGTATTAGAAACGGGTGTGGGAGCCACCAGTG  50

seq1  GTAGGCACAGTGAGTTGTCTCAGAGGAAAAGACAGCAAGGCTGGTATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCACAGTGAGTTGTCTCAGAGGAAAAGACAGCAAGGCTGGTATTCA  100

seq1  CAGACAATACACTAAATGGGAACCATGTACCTTCAGCAGCTCATGGCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAATACACTAAATGGGAACCATGTACCTTCAGCAGCTCATGGCCTC  150

seq1  AGTCTCCCCAGCCGCACATTGCTAAGGGAAGGTTTCAGACGCGCTACCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCCCAGCCGCACATTGCTAAGGGAAGGTTTCAGACGCGCTACCCT  200

seq1  TACTTGAAACGCATGGGGACATCCAAAGGAGAAGCTGAACGAACAGGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGAAACGCATGGGGACATCCAAAGGAGAAGCTGAACGAACAGGCTC  250

seq1  CGCAGCACTTCTCCTTTCCTTCTTCATTCGCTTTCAGTATTAAGATTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCACTTCTCCTTTCCTTCTTCATTCGCTTTCAGTATTAAGATTGAG  300

seq1  GCATTGACTGTGAGCTATTCTTCCTGCAGGATAGAGTGGAATATTGCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGACTGTGAGCTATTCTTCCTGCAGGATAGAGTGGAATATTGCAAA  350

seq1  ACGCATTTGCAAGCAGCCTAAATCATGATTGACAAAACGAGATTTGTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCATTTGCAAGCAGCCTAAATCATGATTGACAAAACGAGATTTGTTAA  400

seq1  TACAATGGTTTGAGGCACTTGACAGAAATTTTTGTCAACAGTGTAGATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGGTTTGAGGCACTTGACAGAAATTTTTGTCAACAGTGTAGATTA  450

seq1  AGGGATTCCGGGGGAAAAAATGAAATTTGCAGATGAAATGGCTTTGATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTCCGGGGGAAAAAATGAAATTTGCAGATGAAATGGCTTTGATGT  500

seq1  TTCTCCTGAAAAGCATTTTGTTGACAGACTGGATCAGAGTGAAGAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTGAAAAGCATTTTGTTGACAGACTGGATCAGAGTGAAGAAAAAA  550

seq1  AATGTGCATTTTCTCAATGCGTGCGTTTTAAGTCTTTGACAAAACACGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCATTTTCTCAATGCGTGCGTTTTAAGTCTTTGACAAAACACGCA  600

seq1  TTAGTCCTGCTGCTCGGGATCATTTGTCACCTACTCTATTGGCTTTGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCCTGCTGCTCGGGATCATTTGTCACCTACTCTATTGGCTTTGCCT  650

seq1  CTAACCACAAAGGGGGGTAGGATGTGAGCAGAAAAAAAAATAAAACAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCACAAAGGGGGGTAGGATGTGAGCAGAAAAAAAAATAAAACAAAA  700

seq1  TAAACCTACTAAGATGGGTCCCGAAATGATGGGGCCCCTTCCGGTAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTACTAAGATGGGTCCCGAAATGATGGGGCCCCTTCCGGTAATTT  750

seq1  CCCCAAGATCCCCTCACCCCCATGAGGAAATGTCTTCTGCTATCAAGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGATCCCCTCACCCCCATGAGGAAATGTCTTCTGCTATCAAGCCA  800

seq1  CTTAGTTTAGGTAATAAGCAGGAGAAAGTACAAGAAGGTTTCTAAGCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTTAGGTAATAAGCAGGAGAAAGTACAAGAAGGTTTCTAAGCCAA  850

seq1  TAATTCTCAAGGCATGATAGCCAGACTAGCAGGTACCCATGGAAATCACT  900
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TAATTCTCAAGGCATGATAGCCAGACTAGCAAGTACCCATGGAAATCACT  900

seq1  CAAGCCTACAGCTGCATGAAGGTAGGGAACAGAAACCCACCTCTACATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTACAGCTGCATGAAGGTAGGGAACAGAAACCCACCTCTACATAA  950

seq1  GCCCCGTCGATTATTTAAGATATTTAAACTTATTTAAGATATGCGCAGGG  1000
      ||||||||||||||||||||||||| ||||||||| ||||||||||| ||
seq2  GCCCCGTCGATTATTTAAGATATTT-AACTTATTT-AGATATGCGCA-GG  997

seq1  TGTGTTGATTTGAGCAATAGACAGAGAAATGGATTGGTTCACATAACTGG  1050
      ||||||||||||||| |||||||||| |||||||| |||||||| ||| |
seq2  TGTGTTGATTTGAGC-ATAGACAGAG-AATGGATT-GTTCACAT-ACTTG  1043

seq1  AATATTAAGCCTATATGTAATGGTTCAAATATGGCTGGGTCCAGGAGTTC  1100
      |||||| |||   ||| | |||  |||||||||||||||| || ||||||
seq2  AATATT-AGC--TTATTTTATG--TCAAATATGGCTGGGTTCA-GAGTTC  1087

seq1  ATGCATCATTGCCTTCACAGTGTCCCATTGGTCACCTTCCTCTTTAATGG  1150
      || ||||| ||| |||| || | |||||||| |||  ||| |||||   |
seq2  AT-CATCAATGCTTTCA-AG-GGCCCATTGG-CAC--TCC-CTTTA--TG  1128

seq1  CCGCATTCTCTATCATGACAATATGTCACCAGCTTCAGGAT  1191
      ||||||||||||||||| |||||||||||  ||||||||||
seq2  CCGCATTCTCTATCATGGCAATATGTCACACGCTTCAGGAT  1169

seq1: chr8_92620625_92621613
seq2: B6Ng01-044M17.g_68_882 (reverse)

seq1  CCTTCCTCTTCCCCTTCCTCTTCCTCTCCCTCTCCTTCTCTCCCTCTCCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTTCCTCCCTTCCCTCTTCTTCTTTTTCCCTCCCTCCCCCTCCTTCTCCC  100
                                                        
seq2  --------------------------------------------------  0

seq1  CTCTTACTTCATTCTCTCCCTCTTTCTCTCTCTCCCCTCCCTCCCCTCTC  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTCCTCTTCCTTCCCCCTTCTCTCCCCCCTCCCTTCTCCCTCTCTCTCCC  200
                                || ||| |||||||||||||||||
seq2  --------------------------CCTTCCTTTCTCCCTCTCTCTCCC  24

seq1  CCCGTACCCGTCCTTCTGTCTTCTAAAGCAATTATTAT-AGATGCATTGT  249
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCCGTACCCGTCCTTCTGTCTTCTAAAGCAATTATTATAAGATGCATTGT  74

seq1  GTTTCTAGATGTTTGATAGATAGG-AAGTGAGGATGAATCAGGAACAAAG  298
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTTTCTAGATGTTTGATAGATAGGAAAGTGAGGATGAATCAGGAACAAAG  124

seq1  CACCATCTGTCTGCTGGGTAAGGGAGGTTCTGGAATATGAGTGCCCTGGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCTGTCTGCTGGGTAAGGGAGGTTCTGGAATATGAGTGCCCTGGG  174

seq1  CCTCTCGAACGCACCCTGAGTCCTGTAGAGAGGAACCAGAGTGTTTTGGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCGAACGCACCCTGAGTCCTGTAGAGAGGAACCAGAGTGTTTTGGA  224

seq1  GAGAGTGAAGACTCCCAGCACTGAGGAGGTTTAGAGAAGAGGATCATCAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGAAGACTCCCAGCACTGAGGAGGTTTAGAGAAGAGGATCATCAG  274

seq1  TTCCAAAGTTTGAGGCACGCTGGACTCCATAACATGCTGAGGCCAGCACT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAGTTTGAGGCACGCTGGACTCCATAACATGCTGAGGCCAGCACT  324

seq1  GGATGTATGAAGCCCAACTTCAAAACACATGCACAGCGATGATAATGGCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTATGAAGCCCAACTTCAAAACACATGCACAGCGATGATAATGGCA  374

seq1  ATCAATGGATTTAACGTAACTTTAATAGTAAACCTGTCTGAAATAGTTTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGGATTTAACGTAACTTTAATAGTAAACCTGTCTGAAATAGTTTA  424

seq1  TATGTTCTCAAGTACACACATTTACAGTCTTCAGACAATACTGTATAAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCTCAAGTACACACATTTACAGTCTTCAGACAATACTGTATAAGG  474

seq1  AAACCACACACACACACAGCCTCTCTTCATATGTGTTGTTGTTGTTGTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACACACACACACAGCCTCTCTTCATATGTGTTGTTGTTGTTGTTG  524

seq1  TTGTTGTTATATTTGACATGATTTTTCATAGCAACCACTTCCTAATCAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTATATTTGACATGATTTTTCATAGCAACCACTTCCTAATCAAA  574

seq1  ACACTGGCTCTGATCCTCTCTGGCCATGTTTCTCTGCTGCATTCATATTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGCTCTGATCCTCTCTGGCCATGTTTCTCTGCTGCATTCATATTC  624

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTGTCTCTCTCTCCAGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTGTCTCTCTCTCCAGC  674

seq1  ATAATAATCAGAGGGAGGAGACGTTAATGTTCATGAATTTCCCCTTCACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATCAGAGGGAGGAGACGTTAATGTTCATGAATTTCCCCTTCACA  724

seq1  GGGAAGTTGAGAGTTTGTGTTATTAATATCTTATCTCCCTCAGCAGGCCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTTGAGAGTTTGTGTTATTAATATCTTATCTCCCTCAGCAGGCCA  774

seq1  GTGATTAATGTTTAAGGCCAACAGTTCTCCAGCCTGAATTC  989
      |||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTAATGTTTAAGGCCAACAGTTCTCCAGCCTGAATTC  815