BAC Information

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BAC

Clone NameB6Ng01-045C03
Chromosome8 (Build37)
Map Location 50,646,877 - 50,798,048
singlet/doubletdoublet
Overlap genenone
Upstream geneOdz3, 2900073C17Rik, LOC100039866, 4930555F03Rik
Downstream geneLOC100039919, EG667495, LOC100039954, LOC100039966
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045C03.bB6Ng01-045C03.g
ACCDH870680DH870681
length411989
definitionDH870680|Mus musculus domesticus DNA, BAC clone: B6Ng01-045C03, 5' end.DH870681|Mus musculus domesticus DNA, BAC clone: B6Ng01-045C03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,646,877 - 50,647,287)(50,797,057 - 50,798,048)
sequence
gaattcttttgaattctacccacttcagtttgtgtgaacttttaggtact
ttttgtttagttcttcttaatgtgtcacttctggaaggacacctaaatga
tattcaagttcaactttttcatcatagcaatgctaaaatggccatgatga
aaatgctcttctcatagtcatagagctgggcttgaaaacttacaagctga
ctcctattgcaagaataggatgaatgacttcataggcaacccaggaagta
ttgtgttgctattaatggtgcttcctacatatttttcttttttcaccaga
caacactcagctcttcaagatcaagagttatgtcttatttactttttgtg
ttttttgttgttttctgcgatgtcttgtgtgtgtttgtgtgttgtgtgtt
gtgtgttgtat
gaattcattccaacatcttcagtaagcaggttggctgggagctggctggt
ccaggatcacctgtgctgggaaacttcctctgtcccacatggtctctcat
cttccaggaggttagcggagcctgttcatatggcagctgggcagccttcc
aagaaagccagcagtagcattcaagaaagctcaacattgtttcaccaaat
tctatggtggaaagactgtcaccagggagcccaaattcagggggtgggag
aggtaaggtttaaatggaaggatgtctaactcaaagatcaaatggaacag
aaataagcaaagcaaaagcgtaactgttttatgatctctcaaaattagtc
aaaggaataagtcagaatgagagtgcaaagggtaaagttattgctgtaaa
gagactgaagcaaagatcatgattttgcatctaccagtgtatctgcaaat
aggcacatgttcctatttggtgcttttaagatcttaaaagaactttaatc
tctatcgcatcttcattggggtcttatttctctgtgttgttgttgtttgg
ttcttattttcagccaaatctacaggtccttccatggtttgctttttttc
ttggcgtttcttccttctccccatcttactctctgactcccagaactgtt
ctatttctttctctgagtgagtttttatctttccccagcctctcttatcc
tgcttactgtccattccaaactctggcagaaacaaagttaatgaagaaaa
ccacttaggtcatttggcagccatgaagaagcaatgagattgccaacttc
taaagagccagaggacatttaaaccccaaatgctgggaatctttgtgcaa
aacaattggaacagagggaggggaaaaaagcatgtaaaggattattaggt
agcagaggttggccaccgttttccattacttatttccatacttataagag
acgatttctatgtttttgtttagttttgtcaagggagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_50646877_50647287
seq2: B6Ng01-045C03.b_39_449

seq1  GAATTCTTTTGAATTCTACCCACTTCAGTTTGTGTGAACTTTTAGGTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGAATTCTACCCACTTCAGTTTGTGTGAACTTTTAGGTACT  50

seq1  TTTTGTTTAGTTCTTCTTAATGTGTCACTTCTGGAAGGACACCTAAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTAGTTCTTCTTAATGTGTCACTTCTGGAAGGACACCTAAATGA  100

seq1  TATTCAAGTTCAACTTTTTCATCATAGCAATGCTAAAATGGCCATGATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAGTTCAACTTTTTCATCATAGCAATGCTAAAATGGCCATGATGA  150

seq1  AAATGCTCTTCTCATAGTCATAGAGCTGGGCTTGAAAACTTACAAGCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTCTTCTCATAGTCATAGAGCTGGGCTTGAAAACTTACAAGCTGA  200

seq1  CTCCTATTGCAAGAATAGGATGAATGACTTCATAGGCAACCCAGGAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTATTGCAAGAATAGGATGAATGACTTCATAGGCAACCCAGGAAGTA  250

seq1  TTGTGTTGCTATTAATGGTGCTTCCTACATATTTTTCTTTTTTCACCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTGCTATTAATGGTGCTTCCTACATATTTTTCTTTTTTCACCAGA  300

seq1  CAACACTCAGCTCTTCAAGATCAAGAGTTATGTCTTATTTACTTTTTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTCAGCTCTTCAAGATCAAGAGTTATGTCTTATTTACTTTTTGTG  350

seq1  TTTTTTGTTGTTTTCTGCGATGTCTTGTGTGTGTTTGTGTGTTGTGTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTGTTTTCTGCGATGTCTTGTGTGTGTTTGTGTGTTGTGTGTT  400

seq1  GTGTGTTGTAT  411
      |||||||||||
seq2  GTGTGTTGTAT  411

seq1: chr8_50797057_50798048
seq2: B6Ng01-045C03.g_65_1053 (reverse)

seq1  TTCTCCCCTTGCACAAACTCAAACAAAAACATAGAAATCGTCTTCTAATA  50
      |||| |||||| |||||   |||||||||||||||||||||| ||| |||
seq2  TTCT-CCCTTG-ACAAAACTAAACAAAAACATAGAAATCGTC-TCTTATA  47

seq1  AGTATGGGAAAATAAGTAATGGAAAACGGTGGCCAACCTCTTGCTACCTA  100
      |||||||  ||||||||||||||||||||||||||||||| |||||||||
seq2  AGTATGG--AAATAAGTAATGGAAAACGGTGGCCAACCTC-TGCTACCTA  94

seq1  ATAATCCTTTACATGCTTTTTTTCCCCCTCCCTCTGTTCCATTTGTATTT  150
      ||||||||||||||||||||||  ||||||||||||||||| |||| |||
seq2  ATAATCCTTTACATGCTTTTTT--CCCCTCCCTCTGTTCCAATTGT-TTT  141

seq1  GCACAAAGATTCCCAGCATTTGGGGTTTAAATGTCCTCTGGCTCTTTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAGATTCCCAGCATTTGGGGTTTAAATGTCCTCTGGCTCTTTAGA  191

seq1  AGTTGGC-ATCTCATTGCTTCTTCATGGCTGCCAAATGA-CTTAGT-GTT  247
      ||||||| ||||||||||||||||||||||||||||||| || ||| |||
seq2  AGTTGGCAATCTCATTGCTTCTTCATGGCTGCCAAATGACCTAAGTGGTT  241

seq1  TTCTTCATTAACTTTGTTTCTGCCAGAGTTTGGAATGGACAGTAAGCAGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATTAACTTTGTTTCTGCCAGAGTTTGGAATGGACAGTAAGCAGG  291

seq1  ATAAGAGAGGCTGGGGAAAGAT-AAAACTCACTCAGAGAAAG-AATAGAA  345
      |||||||||||||||||||||| ||||||||||||||||||| |||||||
seq2  ATAAGAGAGGCTGGGGAAAGATAAAAACTCACTCAGAGAAAGAAATAGAA  341

seq1  CAGTTCTGGGAGTCAGAGAGTAAGATGGGGAGAAGGAAGAAACGCCAAGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTGGGAGTCAGAGAGTAAGATGGGGAGAAGGAAGAAACGCCAAGA  391

seq1  AAAAAAGCAAACCATGGAAGGACCTGTAGATTTGGCTG-AAATAAGAACC  444
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAAAAGCAAACCATGGAAGGACCTGTAGATTTGGCTGAAAATAAGAACC  441

seq1  AAACAACAACAACACAGAGAAATAAGACCCCAATGAAGATGCGATAGAGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACAACAACACAGAGAAATAAGACCCCAATGAAGATGCGATAGAGA  491

seq1  TTAAAGTTCTTTTAAGATCTTAAAAGCACCAAATAGGAACATGTGCCTAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTTCTTTTAAGATCTTAAAAGCACCAAATAGGAACATGTGCCTAT  541

seq1  TTGCAGATACACTGGTAGATGCAAAATCATGATCTTTGCTTCAGTCTCTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGATACACTGGTAGATGCAAAATCATGATCTTTGCTTCAGTCTCTT  591

seq1  TACAGCAATAACTTTACCCTTTGCACTCTCATTCTGACTTATTCCTTTGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCAATAACTTTACCCTTTGCACTCTCATTCTGACTTATTCCTTTGA  641

seq1  CTAATTTTGAGAGATCATAAAACAGTTACGCTTTTGCTTTGCTTATTTCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTTGAGAGATCATAAAACAGTTACGCTTTTGCTTTGCTTATTTCT  691

seq1  GTTCCATTTGATCTTTGAGTTAGACATCCTTCCATTTAAACCTTACCTCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATTTGATCTTTGAGTTAGACATCCTTCCATTTAAACCTTACCTCT  741

seq1  CCCACCCCCTGAATTTGGGCTCCCTGGTGACAGTCTTTCCACCATAGAAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCCTGAATTTGGGCTCCCTGGTGACAGTCTTTCCACCATAGAAT  791

seq1  TTGGTGAAACAATGTTGAGCTTTCTTGAATGCTACTGCTGGCTTTCTTGG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGAAACAATGTTGAGCTTTCTTGAATGCTACTGCTGGCTTTCTTGG  841

seq1  AAGGCTGCCCAGCTGCCATATGAACAGGCTCCGCTAACCTCCTGGAAGAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGCCCAGCTGCCATATGAACAGGCTCCGCTAACCTCCTGGAAGAT  891

seq1  GAGAGACCATGTGGGACAGAGGAAGTTTCCCAGCACAGGTGATCCTGGAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACCATGTGGGACAGAGGAAGTTTCCCAGCACAGGTGATCCTGGAC  941

seq1  CAGCCAGCTCCCAGCCAACCTGCTTACTGAAGATGTTGGAATGAATTC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGCTCCCAGCCAACCTGCTTACTGAAGATGTTGGAATGAATTC  989