BAC Information

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BAC

Clone NameB6Ng01-046A22
Chromosome8 (Build37)
Map Location 87,492,585 - 87,675,078
singlet/doubletdoublet
Overlap geneLOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556
Upstream geneAsf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130, Cacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a
Downstream geneEG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2, Neto2, Itfg1, LOC100040798, Phkb, LOC671665
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046A22.bB6Ng01-046A22.g
ACCDH871335DH871336
length947999
definitionDH871335|Mus musculus domesticus DNA, BAC clone: B6Ng01-046A22, 5' end.DH871336|Mus musculus domesticus DNA, BAC clone: B6Ng01-046A22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,674,531 - 87,675,078)(87,492,585 - 87,493,608)
sequence
gaattccagtgagaacagccaatagggatggcttctctcacctggtactt
aaccatgactggaagcagtttggggagaattgagttaaactcatcttaca
tttgtagataacagcgcattattgagggaagtcaaggcaggaacctggaa
gcagggactgatgcagaagccatggagaaacactgcttagaggcccgctc
cctgtaagcctttcagcctgctttcttattgaagaaacatggtcccatgg
gtggtactccccacagtaccctcttacaccaatcatcagtcaagaaaatg
tcccacagacttgcctacaggtcatacggatgaagagttttctcagttga
tgttctttttctcagattgcaccaattttacaagtaaagatgatgatgac
acagtcaaaacaattaacccctcagtcagcttgacacacttggcatcagc
tttcacccttctgttacattcagccccaagatctcatgttaatattaata
tcacaatataaaagaaataacatgaaatgtcccacagtctttaaaaatgc
aaacactttaaacattctgactccttaaaatatctaaagtctcagctgaa
tgtaattccagaacttaagtcccagcactcagaggtggaggcaggtggat
cactgaactcaagaccagaatggtctaaaagtaagttccaggacagtcag
agctacataataagaccctatctcaaaaaaaagaaacaatccaatgtctc
tttcagagttcaaagtctctactgtggctcctgtaaaaccaaaaatttct
tactccaatagggaagatccagggcccaatcacaataaaaaccaaaacca
aatggaagtccatcagaagtctagtcagcctcaaatacagaccacactga
catgagggatactagaaacactgacatcacagctgtcacagtgatgt
gaattcttcactgatacttcctcatgtagatgaactcacaaaggctggtg
ccccacacccttcctcagcagatctttgccaaatggcatcccctttccct
attcttcccttaggccttttgctgttcccttttcactgtctcacagtccc
tgtgactttaactgtgctagtcattccagctgtgttggttcttaccacct
caagctgactggccagtttctttctctgcctccacccttctagcactatg
ttaataggttgtttattagacaggcagtgtttaatataattatcagatga
ccaaggaagctgcggggcaagaagttgagaacaaaaggtagtacggttgg
ggcatggctgtaaattttcaataaagtgaaacggaacaaaataaaacaaa
acaataactcacagacgagaaatcacactcagagaaaaagtgcccagttc
cttgagacccagcctgcactgagctgggcagggatctgaagtcagccaga
gagggtctgtttgtagggccttggccaagtgaggccttcgggggttgggg
tggggaggacaccttttcatagcgtaactcccgtccacctgctagtttac
ccttttgtcgctgcagcgtcagcagctcccaggtatcacctttcaccgtg
cgggccaaagtattggtagtctgggtcgatctgagtaggggacaccagac
ctaggagcactaggggagtcagcaacggagccaagtggctccgggccatg
cccggattccaaccgaccccaacgcgccccgtggccgagctcgcgaggag
ctcacagcacagacaatctggcgtccgaagggcacaccccacccaacctt
tgtgaaagcgtgtgaccggccacgccgcgcttccctcacccccccggcag
cgcatgatcgacgcgcgctgtccgccacctcccgcgcactgctggtgtgt
tggccacgcataaagtcgctgcctagggctcctcggtttgagattcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_87674531_87675078
seq2: B6Ng01-046A22.b_44_591 (reverse)

seq1  ATTTTTAAAGACTGTGGGACATTTCATGTTATTTCTTTTATATTGTGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAAGACTGTGGGACATTTCATGTTATTTCTTTTATATTGTGATA  50

seq1  TTAATATTAACATGAGATCTTGGGGCTGAATGTAACAGAAGGGTGAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTAACATGAGATCTTGGGGCTGAATGTAACAGAAGGGTGAAAGC  100

seq1  TGATGCCAAGTGTGTCAAGCTGACTGAGGGGTTAATTGTTTTGACTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCAAGTGTGTCAAGCTGACTGAGGGGTTAATTGTTTTGACTGTGT  150

seq1  CATCATCATCTTTACTTGTAAAATTGGTGCAATCTGAGAAAAAGAACATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCATCTTTACTTGTAAAATTGGTGCAATCTGAGAAAAAGAACATC  200

seq1  AACTGAGAAAACTCTTCATCCGTATGACCTGTAGGCAAGTCTGTGGGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGAAAACTCTTCATCCGTATGACCTGTAGGCAAGTCTGTGGGACA  250

seq1  TTTTCTTGACTGATGATTGGTGTAAGAGGGTACTGTGGGGAGTACCACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTGACTGATGATTGGTGTAAGAGGGTACTGTGGGGAGTACCACCC  300

seq1  ATGGGACCATGTTTCTTCAATAAGAAAGCAGGCTGAAAGGCTTACAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACCATGTTTCTTCAATAAGAAAGCAGGCTGAAAGGCTTACAGGGA  350

seq1  GCGGGCCTCTAAGCAGTGTTTCTCCATGGCTTCTGCATCAGTCCCTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGCCTCTAAGCAGTGTTTCTCCATGGCTTCTGCATCAGTCCCTGCTT  400

seq1  CCAGGTTCCTGCCTTGACTTCCCTCAATAATGCGCTGTTATCTACAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTCCTGCCTTGACTTCCCTCAATAATGCGCTGTTATCTACAAATG  450

seq1  TAAGATGAGTTTAACTCAATTCTCCCCAAACTGCTTCCAGTCATGGTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGAGTTTAACTCAATTCTCCCCAAACTGCTTCCAGTCATGGTTAA  500

seq1  GTACCAGGTGAGAGAAGCCATCCCTATTGGCTGTTCTCACTGGAATTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAGGTGAGAGAAGCCATCCCTATTGGCTGTTCTCACTGGAATTC  548

seq1: chr8_87492585_87493608
seq2: B6Ng01-046A22.g_69_1066

seq1  GAATTCTTCACTGATACTTCCTCATGTAGATGAACTCACAAAGGCTGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCACTGATACTTCCTCATGTAGATGAACTCACAAAGGCTGGTG  50

seq1  CCCCACACCCTTCCTCAGCAGATCTTTGCCAAATGGCATCCCCTTTCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACACCCTTCCTCAGCAGATCTTTGCCAAATGGCATCCCCTTTCCCT  100

seq1  ATTCTTCCCTTAGGCCTTTTGCTGTTCCCTTTTCACTGTCTCACAGTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCCCTTAGGCCTTTTGCTGTTCCCTTTTCACTGTCTCACAGTCCC  150

seq1  TGTGACTTTAACTGTGCTAGTCATTCCAGCTGTGTTGGTTCTTACCACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTTTAACTGTGCTAGTCATTCCAGCTGTGTTGGTTCTTACCACCT  200

seq1  CAAGCTGACTGGCCAGTTTCTTTCTCTGCCTCCACCCTTCTAGCACTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGACTGGCCAGTTTCTTTCTCTGCCTCCACCCTTCTAGCACTATG  250

seq1  TTAATAGGTTGTTTATTAGACAGGCAGTGTTTAATATAATTATCAGATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGGTTGTTTATTAGACAGGCAGTGTTTAATATAATTATCAGATGA  300

seq1  CCAAGGAAGCTGCGGGGCAAGAAGTTGAGAACAAAAGGTAGTACGGTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAAGCTGCGGGGCAAGAAGTTGAGAACAAAAGGTAGTACGGTTGG  350

seq1  GGCATGGCTGTAAATTTTCAATAAAGTGAAACGGAACAAAATAAAACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGCTGTAAATTTTCAATAAAGTGAAACGGAACAAAATAAAACAAA  400

seq1  ACAATAACTCACAGACGAGAAATCACACTCAGAGAAAAAGTGCCCAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAACTCACAGACGAGAAATCACACTCAGAGAAAAAGTGCCCAGTTC  450

seq1  CTTGAGACCCAGCCTGCACTGAGCTGGGCAGGGATCTGAAGTCAGCCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGACCCAGCCTGCACTGAGCTGGGCAGGGATCTGAAGTCAGCCAGA  500

seq1  GAGGGTCTGTTTGTAGGGCCTTGGCCAAGTGAGGCCTTCGGGGGTTGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTCTGTTTGTAGGGCCTTGGCCAAGTGAGGCCTTCGGGGGTTGGGG  550

seq1  TGGGGAGGACACCTTTTCATAGCGTAACTCCCGTCCACCTGCTAGTTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGGACACCTTTTCATAGCGTAACTCCCGTCCACCTGCTAGTTTAC  600

seq1  CCTTTTGTCGCTGCAGCGTCAGCAGCTCCCAGGTATCACC-TTCACCGTG  649
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCTTTTGTCGCTGCAGCGTCAGCAGCTCCCAGGTATCACCTTTCACCGTG  650

seq1  CGGGCCAAAGTATTGGTAGTCTGGGTCGATCTGAGTAGGGGACACCAGAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCCAAAGTATTGGTAGTCTGGGTCGATCTGAGTAGGGGACACCAGAC  700

seq1  CTAGGAGCACTAGGGGAGTCAGCAACGGAGCCAAGTGGCTCCGGGCCATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGCACTAGGGGAGTCAGCAACGGAGCCAAGTGGCTCCGGGCCATG  750

seq1  CCCGGATTCCAACCGACCCCAACGCGCCCCGTGGCCGAGGCTCGCGAGGA  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCCGGATTCCAACCGACCCCAACGCGCCCCGTGGCCGA-GCTCGCGAGGA  799

seq1  GCCCACAGCACAGACAATCTTGGCGTCCGAAAGGGCACACCCCACCCAAC  849
      || |||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  GCTCACAGCACAGACAATC-TGGCGTCCG-AAGGGCACACCCCACCCAAC  847

seq1  CCTTGTGAAAGCGTGTGGACCGGGCCACGCGGCGCCTTCCCCTCACCCCC  899
      | |||||||||||||| |||| |||||||| ||||  | |||||||||||
seq2  CTTTGTGAAAGCGTGT-GACC-GGCCACGCCGCGC--TTCCCTCACCCCC  893

seq1  CCGGCAGCCGCAATGGATCCGACCGCGGCGCTGTCCCGCCCACCTCCCCG  949
      ||||||| ||||   ||| ||| ||| |||||||||   |||||| ||||
seq2  CCGGCAG-CGCA--TGAT-CGA-CGC-GCGCTGTCC--GCCACCT-CCCG  934

seq1  CGCACTGCCTGGTGTGGTTTGGGCCACGCATAAAAGGTTCTCCGGCCTAG  999
      ||||||| ||||||||   | |||||||||||||  ||    | ||||||
seq2  CGCACTG-CTGGTGTG---TTGGCCACGCATAAA--GT--CGCTGCCTAG  976

seq1  GGCTCTCTCGGTTTTGAGATCTCTT  1024
      ||||| ||||| |||||||| ||||
seq2  GGCTC-CTCGG-TTTGAGAT-TCTT  998