BAC Information

Click to search

BAC

Clone NameB6Ng01-046G13
Chromosome8 (Build37)
Map Location 87,213,788 - 87,311,254
singlet/doubletdoublet
Overlap geneTrmt1, LOC100039997, Lyl1, Nfix
Upstream genePkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130, Cacna1a, Ier2, LOC100039975, Btbd14b
Downstream geneDand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2, Neto2, Itfg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046G13.bB6Ng01-046G13.g
ACCDH871584DH871585
length9481,028
definitionDH871584|Mus musculus domesticus DNA, BAC clone: B6Ng01-046G13, 5' end.DH871585|Mus musculus domesticus DNA, BAC clone: B6Ng01-046G13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,310,303 - 87,311,254)(87,213,788 - 87,214,846)
sequence
gaattccaggtgggaaaaagtgaacttccagaagcctggctgtgaatcag
aacctgcagcttttgcttaagtaagagtcatcaaactgtccatagctggg
gcacactgaactgtgccctctaatccagacactctctgactccaaatagt
gctgtgataggcacggggatccggtgaagttccacgcagggtggtgtgcg
cctgcaatcccaacacgcaggaggtagatgctgaagcaggaagatcgcca
ccatttgaggccagtgtggtatacatagttccagactaggctggactaga
ggaagaatcttgtctcagaaaaaccaaaaccaaaatccaaactaagaaac
ccaacagtcacccccaactgataatagcaaccatagcaacataaaaaggg
actggacacgggacggggacggtatgaggccatgggagggctactgtgtg
tagcatgcgaacggagggtctgaaatgtgtatgtaaatggtaaggctggg
gtggctatgtggtttgctgatggtggcagcctatggtcctgtggggatct
agttggtagactcactagcagtaaaaagtctgtgccagccatgtacacgt
ggctgtagaggcacagtgccttctaggtttcaccactgtgcccggtcaga
cccagcatctctatgcatctgcacccctaccccaggtccctctgcgttcc
aggtgcttccatcctccctgcaaccgccttctctagctttcccctccctt
gttcacccccgccggctcccggggcttcccccatggagttgcctcggcca
aaaccaaccctgctcctacgacaacgcctcgaagcctgcaggggggcggg
accctacccctatggccgacttcaaagtcatagcccactcttttgggatc
tcaacagccaccccgggcacacgtcgccgctgcttagagtaggactgc
gaattcaaccgggacctgacgtgagcaagggtcgcgggttagcttggcca
aggggagttggtcagttaggtagaggttgtacgagaatatcagtccggga
cgcggcactcaaaggaagagaaaagttggtagagaggcgtcagcattagt
cgaaggccaacatcttgaaagatgaaggcacataccggatttttatatta
agtgccaggactatacattccttttagggtcctcctgtgttcaaggtgtg
tggctccccttttccctttacaatgtggtcgtggactttgacttccgaga
gttaattcctgtagttgtattcacacagacctgttacttttctgcaagtc
aaatttcacgtcagtttacatacattgaattgaagaggggggggactttg
caaaagtcaccttacggttttctgggtttaactaaagatagagcagttag
catttttagcctttgagatgggatttctctactagaatttggggcagtaa
ggaagggactttatggattagggagggacaacaaccttttcaactgtcaa
agggaggactgaggacctgggccacagctaaggagctggcatacaatgtg
accacctccctaccatcccctcctccaggtgtgctgtgatcacagagttt
gctcgaattcatcttggggcccagggaatccagagtgagtggaggttcag
cctggggggaagagtatcactcacaaagttcacttcccacttcatcacac
cttcattaggttcctgaaaggttctaagctctctgcttttttctgccttt
ctcctgggggttcagggaaacaccttcttgcatgaatcatcaggattttg
gaccatttgaaagttacgtgaatttctaaagatcatgatagtctggtttt
gctgatgactgcagtcaagttcagagagagactcagagaaatagctgtga
cttgttgatcagagaggaacagctgaagaatgaatctggccaaggactgc
acgactgctgcaatgggagatctgtgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_87310303_87311254
seq2: B6Ng01-046G13.b_42_989 (reverse)

seq1  GCAGTCCTACTCTCTAGCAGCGGCCACGTGTGCCCGGGGTTGCTGTTGAG  50
      |||||||||||||  ||||||||| ||||||||||||||| |||||||||
seq2  GCAGTCCTACTCT-AAGCAGCGGCGACGTGTGCCCGGGGTGGCTGTTGAG  49

seq1  A-CCCAAAAGAGCTGGGCTCTGAGCTCTG-AGTCGGCCAAAGGGGCAGGG  98
      | |||||||||| |||||| ||| || || ||||||||| ||||| ||||
seq2  ATCCCAAAAGAG-TGGGCTATGA-CTTTGAAGTCGGCCATAGGGGTAGGG  97

seq1  -CCCG-CACCCTGCAGGCTTCGGAGCGTTGTCGTTGGAGCAGTGTTGGTT  146
       |||| | ||||||||||||||  |||||||||| ||||||| |||||||
seq2  TCCCGCCCCCCTGCAGGCTTCGAGGCGTTGTCGTAGGAGCAGGGTTGGTT  147

seq1  TTGGCCGAGGCAACTCCAATGGGGGAAGCCCCGGGAGCCGGCGGGGGTGG  196
      ||||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  TTGGCCGAGGCAACTCC-ATGGGGGAAGCCCCGGGAGCCGGCGGGGGT-G  195

seq1  AACAAAGGAGGGGAAAGCTAGAGAAGGCGGCTGCAGGGAGGACGGAAGCA  246
      ||||| |||||||||||||||||||||||| ||||||||||| |||||||
seq2  AACAAGGGAGGGGAAAGCTAGAGAAGGCGGTTGCAGGGAGGATGGAAGCA  245

seq1  CCCTGGAACGCAGAGGGACCCTGGGGGTAGGGGTGCAGATGCATAGAGAT  296
       |||||||||||||||||||   |||||||||||||||||||||||||||
seq2  -CCTGGAACGCAGAGGGACC--TGGGGTAGGGGTGCAGATGCATAGAGAT  292

seq1  GCTGGGTCTGACCGGGCACAGTGGTGAAACCTAGAAGGCACTGTGCCTCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTCTGACCGGGCACAGTGGTGAAACCTAGAAGGCACTGTGCCTCT  342

seq1  ACAGCCACGTGTACATGGCTGGCACAGACTTTTTACTGCTAGTGAGTCTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCACGTGTACATGGCTGGCACAGACTTTTTACTGCTAGTGAGTCTA  392

seq1  CCAACTAGATCCCCACAGGACCATAGGCTGCCACCATCAGCAAACCACAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTAGATCCCCACAGGACCATAGGCTGCCACCATCAGCAAACCACAT  442

seq1  AGCCACCCCAGCCTTACCATTTACATACACATTTCAGACCCTCCGTTCGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCCCAGCCTTACCATTTACATACACATTTCAGACCCTCCGTTCGC  492

seq1  ATGCTACACACAGTAGCCCTCCCATGGCCTCATACCGTCCCCGTCCCGTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTACACACAGTAGCCCTCCCATGGCCTCATACCGTCCCCGTCCCGTG  542

seq1  TCCAGTCCCTTTTTATGTTGCTATGGTTGCTATTATCAGTTGGGGGTGAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCCCTTTTTATGTTGCTATGGTTGCTATTATCAGTTGGGGGTGAC  592

seq1  TGTTGGGTTTCTTAGTTTGGATTTTGGTTTTGGTTTTTCTGAGACAAGAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGTTTCTTAGTTTGGATTTTGGTTTTGGTTTTTCTGAGACAAGAT  642

seq1  TCTTCCTCTAGTCCAGCCTAGTCTGGAACTATGTATACCACACTGGCCTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCTAGTCCAGCCTAGTCTGGAACTATGTATACCACACTGGCCTC  692

seq1  AAATGGTGGCGATCTTCCTGCTTCAGCATCTACCTCCTGCGTGTTGGGAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTGGCGATCTTCCTGCTTCAGCATCTACCTCCTGCGTGTTGGGAT  742

seq1  TGCAGGCGCACACCACCCTGCGTGGAACTTCACCGGATCCCCGTGCCTAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCGCACACCACCCTGCGTGGAACTTCACCGGATCCCCGTGCCTAT  792

seq1  CACAGCACTATTTGGAGTCAGAGAGTGTCTGGATTAGAGGGCACAGTTCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCACTATTTGGAGTCAGAGAGTGTCTGGATTAGAGGGCACAGTTCA  842

seq1  GTGTGCCCCAGCTATGGACAGTTTGATGACTCTTACTTAAGCAAAAGCTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCCCAGCTATGGACAGTTTGATGACTCTTACTTAAGCAAAAGCTG  892

seq1  CAGGTTCTGATTCACAGCCAGGCTTCTGGAAGTTCACTTTTTCCCACCTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCTGATTCACAGCCAGGCTTCTGGAAGTTCACTTTTTCCCACCTG  942

seq1  GAATTC  952
      ||||||
seq2  GAATTC  948

seq1: chr8_87213788_87214846
seq2: B6Ng01-046G13.g_68_1095

seq1  GAATTCAACCGGGACCTGACGTGAGCAAGGGTCGCGGGTTAGCTTGGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCGGGACCTGACGTGAGCAAGGGTCGCGGGTTAGCTTGGCCA  50

seq1  AGGGGAGTTGGTCAGTTAGGTAGAGGTTGTACGAGAATATCAGTCCGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGTTGGTCAGTTAGGTAGAGGTTGTACGAGAATATCAGTCCGGGA  100

seq1  CGCGGCACTCAAAGGAAGAGAAAAGTTGGTAGAGAGGCGTCAGCATTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGGCACTCAAAGGAAGAGAAAAGTTGGTAGAGAGGCGTCAGCATTAGT  150

seq1  CGAAGGCCAACATCTTGAAAGATGAAGGCACATACCGGATTTTTATATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGGCCAACATCTTGAAAGATGAAGGCACATACCGGATTTTTATATTA  200

seq1  AGTGCCAGGACTATACATTCCTTTTAGGGTCCTCCTGTGTTCAAGGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCAGGACTATACATTCCTTTTAGGGTCCTCCTGTGTTCAAGGTGTG  250

seq1  TGGCTCCCCTTTTCCCTTTACAATGTGGTCGTGGACTTTGACTTCCGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCCCTTTTCCCTTTACAATGTGGTCGTGGACTTTGACTTCCGAGA  300

seq1  GTTAATTCCTGTAGTTGTATTCACACAGACCTGTTACTTTTCTGCAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTCCTGTAGTTGTATTCACACAGACCTGTTACTTTTCTGCAAGTC  350

seq1  AAATTTCACGTCAGTTTACATACATTGAATTGAAGAGGGGGGGGACTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCACGTCAGTTTACATACATTGAATTGAAGAGGGGGGGGACTTTG  400

seq1  CAAAAGTCACCTTACGGTTTTCTGGGTTTAACTAAAGATAGAGCAGTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTCACCTTACGGTTTTCTGGGTTTAACTAAAGATAGAGCAGTTAG  450

seq1  CATTTTTAGCCTTTGAGATGGGATTTCTCTACTAGAATTTGGGGCAGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAGCCTTTGAGATGGGATTTCTCTACTAGAATTTGGGGCAGTAA  500

seq1  GGAAGGGACTTTATGGATTAGGGAGGGACAACAACCTTTTCAACTGTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGACTTTATGGATTAGGGAGGGACAACAACCTTTTCAACTGTCAA  550

seq1  AGGGAGGACTGAGGACCTGGGCCACAGCTAAGGAGCTGGCATACAATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGACTGAGGACCTGGGCCACAGCTAAGGAGCTGGCATACAATGTG  600

seq1  ACCACCTCCCTACCATCCCCTCCTCCAGGTGTGCTGTGATCACAGAGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTCCCTACCATCCCCTCCTCCAGGTGTGCTGTGATCACAGAGTTT  650

seq1  GCTCGAATTCATCTTGGGGCCAAGGGAATCCAGAGTGAGTGGAGGTTCAG  700
      ||||||||||||||||||||| ||||||||||||||||||||||||||| 
seq2  GCTCGAATTCATCTTGGGGCCCAGGGAATCCAGAGTGAGTGGAGGTTCA-  699

seq1  GCCTGGGGGGAAGAGTATCACTCACAAAGTTCACTTCCCACTTCATCCAC  750
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCCTGGGGGGAAGAGTATCACTCACAAAGTTCACTTCCCACTTCAT-CAC  748

seq1  ACCTCATTTAGGTTCCTGAAA-GCTCTAGGCTCTCTGC-TCTTTCTGCCT  798
      ||||   |||||||||||||| | |||| ||||||||| | |||||||||
seq2  ACCTTCATTAGGTTCCTGAAAGGTTCTAAGCTCTCTGCTTTTTTCTGCCT  798

seq1  TTCTCCTGGGGGTTCAGGGAAACACCTTCTTGCATGAATCATCAGGATTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTGGGGGTTCAGGGAAACACCTTCTTGCATGAATCATCAGGATTT  848

seq1  T-GACCATTTGAAAGTTACGGTGAAATTTCTTAAAAGGATCATTGATAGT  897
      | ||||||||||||||||| ||| |||||||   || ||||| |||||||
seq2  TGGACCATTTGAAAGTTAC-GTG-AATTTCT---AAAGATCA-TGATAGT  892

seq1  CTGGTTTTTGCCTGAGTGACTGCAGTCAAGGTTCCAGGAGAGAAGGACTC  947
      ||||||||   |||| ||||||||||||| ||||    |||||  |||||
seq2  CTGGTTTT--GCTGA-TGACTGCAGTCAA-GTTC----AGAGAGAGACTC  934

seq1  AGAGAAAATAGCTGTGGACTTGTCTGATCAAGAAGAGGAAACAGCTGGAA  997
      |||| |||||||||| ||||||| ||||||   ||||| ||||||||  |
seq2  AGAG-AAATAGCTGT-GACTTGT-TGATCA--GAGAGG-AACAGCTG--A  976

seq1  AGAATGAAAATCTGGCCCCAGGGGACTGGCCACGGACTGCTGCAGTGGGT  1047
      ||||||  |||||||||     ||||||  ||| |||||||||| |||  
seq2  AGAATG--AATCTGGCC---AAGGACTG--CAC-GACTGCTGCAATGG--  1016

seq1  GAGATCTGTGAG  1059
      ||||||||||||
seq2  GAGATCTGTGAG  1028