BAC Information

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BAC

Clone NameB6Ng01-046O04
Chromosome8 (Build37)
Map Location 108,335,570 - 108,484,695
singlet/doubletdoublet
Overlap geneRanbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4
Upstream geneBC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2
Downstream geneDpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046O04.bB6Ng01-046O04.g
ACCDH871911DH871912
length919772
definitionDH871911|Mus musculus domesticus DNA, BAC clone: B6Ng01-046O04, 5' end.DH871912|Mus musculus domesticus DNA, BAC clone: B6Ng01-046O04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,483,775 - 108,484,695)(108,335,570 - 108,336,343)
sequence
gaattctttccctctctttccacaggacagggtaaccacagagagaatag
ccctttcctttgccctttggacgcctccagaggaaatgactactatgacc
ggaacttggcactgtttgaggtatctaaggagccattcaggtgtggtcgt
ctggaaggggcttctccggacctctcagctaagcatcaggctggcttctc
ttccactcccaactgccctctctttgcagccatccaggctatggatctca
tggccctttcaatacacttcaccttcccagacccccttgcaaccttacgt
ctgtcctccagggccagtatcctttgccttccttgcagcccctcaccaag
gtgaccacttcctcctcccctccattcctagggcctctcccagcccatgg
ctctgctgtggatagattctttcctttctcctttcctattggctcttcca
gctgttaccctctggttacagaggcttgttttccctccagcctctgtccc
actctgccctccatagctagagctgcagggaatgtgtctctggaaagatt
cccatgtttgtgccttccaacgggaaatttccctttctggacccaagctg
agaagtaagatctggatttaagacatggttcagggtcctaaactccgaac
ctgtacattcatctgcctcacagccaagtaatgtcagcttctcggtctcc
acacattcaaagggcctacatcttcactcatcactcctaacctggcttcc
tgtgtataggatcagaagggacataaaagcttaagacagtgggcagatgg
gagagtcacatatgccacaggggcaagaaacccttggaccccttggagtg
ctggaagtcttgtgctctgtccccacctgagatgtgtatgtatgtgtgtt
atgtgtttgtgtgtgtgtg
gaattcatttacctcacaagcaactgcaggatgaacctatctgatttgct
cttttcttctatgtgacggcaaaacagagaggagataacattcaacaaag
acagccaggaagcacagaaggacaaaagacaagtgcctggtggtagcaga
gtcatgagctactttcttacttcttagtttctgccactgactgccaaaat
cacaatgcaagctgcatctacaagagtctctctgtccccactgtggcttt
gcagtgcaagatcaagccaggtagagatccacctgagacctggagaaggg
gcagccacactgtaggtgggcaggataggccctcagctaaccacacccat
attatatctacccagaagttcttaccactgactcatagacaaaaggggtc
aacttcagaataggatggcagctactggggcccaggatgcctatcattca
ttcctgccctctctgccacagaagtagcaagcatgctaaaactggtcata
tggagagatgcaaacatatttgtcaacttggactcttcccatctctgttt
tccatatttcctataacatgaattctttgttgatgatgggtttgatttct
ttcttttttgttttctgtttgttttgtgtaagttggtgtgtgggtgtgcg
tgggtgtgagtgacaaggtcttacatatggaggctgttctcaaacagact
atgtagcacagatgggcttgaacttttgattctcatgcttctgtgtccaa
gtacttagattataggcatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_108483775_108484695
seq2: B6Ng01-046O04.b_44_962 (reverse)

seq1  CACACACACACAAACACATAACACACATACATACACAATCTTCAGGTGGG  50
      |||||||||||||||||||||||||||||||||||| ||| |||||||||
seq2  CACACACACACAAACACATAACACACATACATACAC-ATC-TCAGGTGGG  48

seq1  GACAGAGCACAAGACTTCCAGCACTCCAAGGGGTCCAAGGGTTTCTTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGCACAAGACTTCCAGCACTCCAAGGGGTCCAAGGGTTTCTTGCC  98

seq1  CCTGTGGCCTATGTGACTCTCCCATCTGCCCACTGTCTTAAGCTTTTATG  150
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGCATATGTGACTCTCCCATCTGCCCACTGTCTTAAGCTTTTATG  148

seq1  TCCCTTCTGATCCTATACACAGGAAGCCAGGTTAGGAGTGATGAGTGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCTGATCCTATACACAGGAAGCCAGGTTAGGAGTGATGAGTGAAG  198

seq1  ATGTAGGCCCTTTGAATGTGTGGAGACCGAGAAGCTGACATTACTTGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGGCCCTTTGAATGTGTGGAGACCGAGAAGCTGACATTACTTGGCT  248

seq1  GTGAGGCAGATGAATGTACAGGTTCGGAGTTTAGGACCCTGAACCATGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGCAGATGAATGTACAGGTTCGGAGTTTAGGACCCTGAACCATGTC  298

seq1  TTAAATCCAGATCTTACTTCTCAGCTTGGGTCCAGAAAGGGAAATTTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCCAGATCTTACTTCTCAGCTTGGGTCCAGAAAGGGAAATTTCCC  348

seq1  GTTGGAAGGCACAAACATGGGAATCTTTCCAGAGACACATTCCCTGCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAAGGCACAAACATGGGAATCTTTCCAGAGACACATTCCCTGCAGC  398

seq1  TCTAGCTATGGAGGGCAGAGTGGGACAGAGGCTGGAGGGAAAACAAGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTATGGAGGGCAGAGTGGGACAGAGGCTGGAGGGAAAACAAGCCT  448

seq1  CTGTAACCAGAGGGTAACAGCTGGAAGAGCCAATAGGAAAGGAGAAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACCAGAGGGTAACAGCTGGAAGAGCCAATAGGAAAGGAGAAAGGA  498

seq1  AAGAATCTATCCACAGCAGAGCCATGGGCTGGGAGAGGCCCTAGGAATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCTATCCACAGCAGAGCCATGGGCTGGGAGAGGCCCTAGGAATGG  548

seq1  AGGGGAGGAGGAAGTGGTCACCTTGGTGAGGGGCTGCAAGGAAGGCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGGAGGAAGTGGTCACCTTGGTGAGGGGCTGCAAGGAAGGCAAAG  598

seq1  GATACTGGCCCTGGAGGACAGACGTAAGGTTGCAAGGGGGTCTGGGAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGGCCCTGGAGGACAGACGTAAGGTTGCAAGGGGGTCTGGGAAGG  648

seq1  TGAAGTGTATTGAAAGGGCCATGAGATCCATAGCCTGGATGGCTGCAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGTATTGAAAGGGCCATGAGATCCATAGCCTGGATGGCTGCAAAG  698

seq1  AGAGGGCAGTTGGGAGTGGAAGAGAAGCCAGCCTGATGCTTAGCTGAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCAGTTGGGAGTGGAAGAGAAGCCAGCCTGATGCTTAGCTGAGAG  748

seq1  GTCCGGAGAAGCCCCTTCCAGACGACCACACCTGAATGGCTCCTTAGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGGAGAAGCCCCTTCCAGACGACCACACCTGAATGGCTCCTTAGATA  798

seq1  CCTCAAACAGTGCCAAGTTCCGGTCATAGTAGTCATTTCCTCTGGAGGCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAACAGTGCCAAGTTCCGGTCATAGTAGTCATTTCCTCTGGAGGCG  848

seq1  TCCAAAGGGCAAAGGAAAGGGCTATTCTCTCTGTGGTTACCCTGTCCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGGGCAAAGGAAAGGGCTATTCTCTCTGTGGTTACCCTGTCCTGT  898

seq1  GGAAAGAGAGGGAAAGAATTC  921
      |||||||||||||||||||||
seq2  GGAAAGAGAGGGAAAGAATTC  919

seq1: chr8_108335570_108336343
seq2: B6Ng01-046O04.g_65_836

seq1  GAATTCATTTACCTCACAAGCAACTGCAGGATGAACCTATCTGATTTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTACCTCACAAGCAACTGCAGGATGAACCTATCTGATTTGCT  50

seq1  CTTTTCTTCTATGTGACGGCAAAACAGAGAGGAGATAACATTCAACAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTCTATGTGACGGCAAAACAGAGAGGAGATAACATTCAACAAAG  100

seq1  ACAGCCAGGAAGCACAGAAGGACAAAAGACAAGTGCCTGGTGGTAGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAGGAAGCACAGAAGGACAAAAGACAAGTGCCTGGTGGTAGCAGA  150

seq1  GTCATGAGCTACTTTCTTACTTCTTAGTTTCTGCCACTGACTGCCAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGAGCTACTTTCTTACTTCTTAGTTTCTGCCACTGACTGCCAAAAT  200

seq1  CACAATGCAAGCTGCATCTACAAGAGTCTCTCTGTCCCCACTGTGGCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGCAAGCTGCATCTACAAGAGTCTCTCTGTCCCCACTGTGGCTTT  250

seq1  GCAGTGCAAGATCAAGCCAGGTAGAGATCCACCTGAGACCTGGAGAAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGCAAGATCAAGCCAGGTAGAGATCCACCTGAGACCTGGAGAAGGG  300

seq1  GCAGCCACACTGTAGGTGGGCAGGATAGGCCCTCAGCTAACCACACCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCACACTGTAGGTGGGCAGGATAGGCCCTCAGCTAACCACACCCAT  350

seq1  ATTATATCTACCCAGAAGTTCTTACCACTGACTCATAGACAAAAGGGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATCTACCCAGAAGTTCTTACCACTGACTCATAGACAAAAGGGGTC  400

seq1  AACTTCAGAATAGGATGGCAGCTACTGGGGCCCAGGATGCCTATCATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAGAATAGGATGGCAGCTACTGGGGCCCAGGATGCCTATCATTCA  450

seq1  TTCCTGCCCTCTCTGCCACAGAAGTAGCAAGCATGCTAAAACTGGTCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCCCTCTCTGCCACAGAAGTAGCAAGCATGCTAAAACTGGTCATA  500

seq1  TGGAGAGATGCAAACATATTTGTCAACTTGGACTCTTCCCATCTCTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGATGCAAACATATTTGTCAACTTGGACTCTTCCCATCTCTGTTT  550

seq1  TCCATATTTCCTATAACATGAATTCTTTGTTGATGATGGGTTTGATTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATTTCCTATAACATGAATTCTTTGTTGATGATGGGTTTGATTTCT  600

seq1  TTCTTTTTTGTTTTCTGTTTGTTTTGTGTAAGTTGGTGTGTGGGTGTGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTGTTTTCTGTTTGTTTTGTGTAAGTTGGTGTGTGGGTGTGCG  650

seq1  TGGGTGTGAGTGACAAGGTCTTACATAGTGAGGCTGTTCTCAAACAGACT  700
      |||||||||||||||||||||||||||  |||||||||||||||||||||
seq2  TGGGTGTGAGTGACAAGGTCTTACATATGGAGGCTGTTCTCAAACAGACT  700

seq1  ATGTAGCCACAGATGGCCTTGAACTTTTGATTCTCATGCTTCTGTGTCCC  750
      |||||| ||||||||| |||||||||||||||||||||||||||||| ||
seq2  ATGTAG-CACAGATGGGCTTGAACTTTTGATTCTCATGCTTCTGTGT-CC  748

seq1  AAGTACTAAGATTATAGGCATGGA  774
      ||||||| ||||||||||||||||
seq2  AAGTACTTAGATTATAGGCATGGA  772