BAC Information

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BAC

Clone NameB6Ng01-046O19
Chromosome8 (Build37)
Map Location 74,100,112 - 74,100,659
singlet/doubletsinglet
Overlap geneSlc27a1
Upstream geneEll, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6
Downstream genePgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046O19.bB6Ng01-046O19.g
ACCDH871939DH871940
length541816
definitionDH871939|Mus musculus domesticus DNA, BAC clone: B6Ng01-046O19, 5' end.DH871940|Mus musculus domesticus DNA, BAC clone: B6Ng01-046O19, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
agaaatccgcctgcctctgcctctcgagtgctgtgattaaaggcgtgcgc
caccactgcccagcactctcttaacttctaagccatctctccagcctata
aaaataaatttaaaactaaaaggattcagacagtggtggcacacgtcttt
aaccccagcactgggaggcagaggcagggggatttctgaattccaggcca
acctggtctacagagtgaggtccaggagagccagggcaacacctgtctca
aaaaacaaaacaaaaacaacaacaaaaaaaaacaaaaacaaaaaaaaaaa
aaactaaaaatgaattaaaaaaaaaaaaaaagggggcaaagaagccagaa
aagcattttagaagattgcctgaggcccaaggctggccctcctggtgcag
tgcctaccacaaataatcctagagggaagggagactccagtgcctgggtg
gcaggtctgccaggaaacctgctgccctcaaaaacagctgccccagggat
tggaggattatcaaaggtatagatcggtcaagggctctgct
gaattcttgggcactgttgggttctgcagactttggatacctgggtttgc
aaaactggttgcccccctccccaccgtatgtctgaccaaagaaagtggag
aatttaaatgggcatctgaacatcagaaagcctttgaggatattaaggag
gccctgttgactgcgccggccttggcactgccagatttaaccaggccctt
caccctttacattaatgaaagggtgggagtggccagaggggttcttattc
agactctagggccatggaagaggcctgtggcatatctaagaagctggacc
cagtggccagcggatggcccacatgtctgaaggccactgcagtggtagcc
ttgcttgttaaggatgtcggcaagttaagggactatcttagtcagagttt
ctattcctgcacaaacatcatgaggcatgttggggaggaaagggtttatt
caacttacacttctatactgctgttcatcaccaaggaagtcaggactgga
actcaagcaggtcagaaagcaggagctgatgcagaagccatggagggatg
ttcttttactggcttgcttcccctgtattgcgtcccactcgaccggcaag
aaagacgcaacaaaccggaatcttccgtggcaaaagctttattgcttact
tcctcaggaagaccctgaaccgggaaaatggcaccgcttttataacctag
cagcatgacgtttcagcacttgatatggcgtgacagctcctgattcgttg
ctcgcccatcaccccactattacatcccgagatgggagtgactaagagtg
agtcactctgcactgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_74100112_74100659
seq2: B6Ng01-046O19.b_47_593 (reverse)

seq1  AGCAGAACCCTTGTGCCGATCTTTACCTTTGATAATCCTCCAAACCCTGG  50
      |||||| ||||||  ||||||| |||||||||||||||||||| ||||||
seq2  AGCAGAGCCCTTG-ACCGATCTATACCTTTGATAATCCTCCAATCCCTGG  49

seq1  GGCAGCTGTTTTTGAGGGCAGCAGGTTTCCTGGCTGACCTGCCACCCAGG  100
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGCAGCTGTTTTTGAGGGCAGCAGGTTTCCTGGCAGACCTGCCACCCAGG  99

seq1  CACTGGAGTCTCCCTTCCCTCTAGGATTATTTGTGGTAGGCACTGCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGAGTCTCCCTTCCCTCTAGGATTATTTGTGGTAGGCACTGCACCA  149

seq1  GGAGGGCCAGCCTTGGGCCTCAGGCAATCTTCTAAAATGCTTTTCTGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGCCAGCCTTGGGCCTCAGGCAATCTTCTAAAATGCTTTTCTGGCT  199

seq1  TCTTTGCCCCCTTTTTTTTTTTTTTTAATTCATTTTTAGTTTTTTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCCCCCTTTTTTTTTTTTTTTAATTCATTTTTAGTTTTTTTTTTT  249

seq1  TTTGTTTTTGTTTTTTTTTGTTGTTGTTTTTGTTTTGTTTTTTGAGACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTGTTTTTTTTTGTTGTTGTTTTTGTTTTGTTTTTTGAGACAG  299

seq1  GTGTTGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGTTGGCCTGG  350
      |||||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  GTGTTGCCCTGGCTCTCCTGGACCTCACTCTGTAGACCAGGTTGGCCTGG  349

seq1  AATTCAGAAATCCCCCTGCCTCTGCCTCCCAGTGCTGGGGTTAAAGACGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGAAATCCCCCTGCCTCTGCCTCCCAGTGCTGGGGTTAAAGACGT  399

seq1  GTGCCACCACTGTCTGAATCCTTTTAGTTTTAAATTTATTTTTATAGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACCACTGTCTGAATCCTTTTAGTTTTAAATTTATTTTTATAGGCT  449

seq1  GGAGAGATGGCTTAGAAGTTAAGAGAGTGCTGGGCAGTGGTGGCGCACGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGATGGCTTAGAAGTTAAGAGAGTGCTGGGCAGTGGTGGCGCACGC  499

seq1  CTTTAATCACAGCACTCGAGAGGCAGAGGCAGGCGGATTTCTGAATTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCACAGCACTCGAGAGGCAGAGGCAGGCGGATTTCTGAATTC  547