BAC Information

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BAC

Clone NameB6Ng01-046P13
Chromosome8 (Build37)14 (Build37)
Map Location 6,146,040 - 6,147,30717,370,387 - 17,370,916
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC623409, LOC669429, LOC100040360
Downstream geneEG665127, EG546032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046P13.bB6Ng01-046P13.g
ACCDH871965DH871966
length1,230544
definitionDH871965|Mus musculus domesticus DNA, BAC clone: B6Ng01-046P13, 5' end.DH871966|Mus musculus domesticus DNA, BAC clone: B6Ng01-046P13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(6,146,040 - 6,147,307)(17,370,387 - 17,370,916)
sequence
gaattcttatattgtcctaggtgaaaatgcattaaattaggaatatttgt
cgatatgtataatgaatattaatattatattaagtaaaatgtgcatattt
ctgcctatatctatttgtttttaatcttcaggaaatagtctatgcattat
aatacataagtcaatgttacctcctgttaaattacaatcttgtttttgtc
aaattacaaccttgtaattggtcaacattagataaaaacagtttaatcac
tgtagagagtcaattcacactctcattttctttctcgtgtgtatgtatgt
gtgtgtctgtaagtgtgtgtatgcacatgggtatgtaggtatttccataa
attactacatataaagagaaataatgactaaataactatggatgatgctg
atagaacagtttctaacttcatatttgtcagaacttacattctaagcaca
aatttcgaagctgttttaaagatttattttctagaagtctctttaacact
tgcagattttaactactttcttcattgaaaggctcccctatttgctgcca
cccagtttcagagagctgccctaccttctggtacatgattgcaactattt
gataaaccatgtcagttcagttagtcatttcttcatttctgcattcctcc
atccacccagcaaaacttcttctctgtaatcccagaaatctccaaaccca
gaaatccaaaagaaaagaaaaagaagcaaaacaaaaacaactaaaagcaa
aaacaatgcctagctgtattaagggagtggatttggaaatattgatgtgg
atgattacctatgataactttgtcagaatgcgatagggatttctaaatac
attcagcaatttcatctgcgaaatgaagaatcatttgctttaagagagag
aaaagccgaatgtggtgtgttagtgttagcttcataatctcaggacctaa
gctaagttaactgtcatatcaatgagggaactgtgctgatagatgaaaaa
acaaacaaacaacaaacaacaaacaatctcaactcaacagcaagccaaac
aaacagtgcttcgagaagaacaagaataatggaaaacagtgcatcacact
taaagcatattccaataaaagtctgttaatacccaacaagcaatccctcc
caaaactggaagatatcaattattaagtccaccatgggtacttaataaat
ggcttcgaattattgggcttttttgggggg
ctttaagattacccatggaaggagttacagagacaaagtttggtgctaag
acgaaaggatggaccatccagagactaccccacccgggatccatcccata
atcagccatcaaatatggacactattgcatataccagcaagattttcctg
aaagaacctggatatagctgtcttgtgtgaggctatgccagtgcctggct
cacagtcatctattggatggaacacagggcccccaatggaggagctagag
aaagtacccaatgagctgaaggggtctgcaaccctataggtcgaacaaca
ttatgaactaaccagtacccccagagctcatgtctctagctgcatatgca
gcagaagatggcctagtaggccatcattgggaagagaggcctcttggtct
tgcaaactttatacgccccagtacaggggaatgccagggccaagacgtgg
gattgggtgggtaggggagcagggcgggagggagggtataggggactttc
aggatagcatttgaaatgtaaatgaagaaaatgtctgataaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_6146040_6147307
seq2: B6Ng01-046P13.b_46_1275

seq1  GAATTCTTATATTGTCCTAGGTGAAAATGCATTAAATTAGGAATATTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATATTGTCCTAGGTGAAAATGCATTAAATTAGGAATATTTGT  50

seq1  CGATATGTATAATGAATATTAATATTATATTAAGTAAAATGTGCATATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATATGTATAATGAATATTAATATTATATTAAGTAAAATGTGCATATTT  100

seq1  CTGCCTATATCTATTTGTTTTTAATCTTCAGGAAATAGTCTATGCATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTATATCTATTTGTTTTTAATCTTCAGGAAATAGTCTATGCATTAT  150

seq1  AATACATAAGTCAATGTTACCTCCTGTTAAATTACAATCTTGTTTTTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATAAGTCAATGTTACCTCCTGTTAAATTACAATCTTGTTTTTGTC  200

seq1  AAATTACAACCTTGTAATTGGTCAACATTAGATAAAAACAGTTTAATCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACAACCTTGTAATTGGTCAACATTAGATAAAAACAGTTTAATCAC  250

seq1  TGTAGAGAGTCAATTCACACTCTCATTTTCTTTCTCGTGTGTATGTATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGAGTCAATTCACACTCTCATTTTCTTTCTCGTGTGTATGTATGT  300

seq1  GTGTGTCTGTAAGTGTGTGTATGCACATGGGTATGTAGGTATTTCCATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTGTAAGTGTGTGTATGCACATGGGTATGTAGGTATTTCCATAA  350

seq1  ATTACTACATATAAAGAGAAATAATGACTAAATAACTATGGATGATGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTACATATAAAGAGAAATAATGACTAAATAACTATGGATGATGCTG  400

seq1  ATAGAACAGTTTCTAACTTCATATTTGTCAGAACTTACATTCTAAGCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACAGTTTCTAACTTCATATTTGTCAGAACTTACATTCTAAGCACA  450

seq1  AATTTCGAAGCTGTTTTAAAGATTTATTTTCTAGAAGTCTCTTTAACACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCGAAGCTGTTTTAAAGATTTATTTTCTAGAAGTCTCTTTAACACT  500

seq1  TGCAGATTTTAACTACTTTCTTCATTGAAAGGCTCCCCTATTTGCTGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATTTTAACTACTTTCTTCATTGAAAGGCTCCCCTATTTGCTGCCA  550

seq1  CCCAGTTTCAGAGAGCTGCCCTACCTTCTGGTACATGATTGCAACTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTTCAGAGAGCTGCCCTACCTTCTGGTACATGATTGCAACTATTT  600

seq1  GATAAACCATGTCAGTTCAGTTAGTCATTTCTTCATTTCTGCATTCCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACCATGTCAGTTCAGTTAGTCATTTCTTCATTTCTGCATTCCTCC  650

seq1  ATCCACCCAGCAAAACTTCTTCTCTGTAATCCCAGAAATCTCCAAACCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCCAGCAAAACTTCTTCTCTGTAATCCCAGAAATCTCCAAACCCA  700

seq1  GAAATCCAAAAGAAAAGAAAAAGAAGCAAAACAAAAACAACTAAAAGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCAAAAGAAAAGAAAAAGAAGCAAAACAAAAACAACTAAAAGCAA  750

seq1  AAACAATGCCTAGCTGTATTAAGGGAGTGGATTTGGAAATATTGATGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATGCCTAGCTGTATTAAGGGAGTGGATTTGGAAATATTGATGTGG  800

seq1  ATGATTACCTATGATAACTTTGTCAGAATGCGATAGGGATTTCTAAATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTACCTATGATAACTTTGTCAGAATGCGATAGGGATTTCTAAATAC  850

seq1  ATTCAGCAATTTCATCTGCGAAATGAAGAATCATTTGCTTTAAGAGAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCAATTTCATCTGCGAAATGAAGAATCATTTGCTTTAAGAGAGAG  900

seq1  AAAAGCCGAATGTGGTGTGTTAGTGTTAGCTTCATAAATCTCAGGACCTA  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAAAGCCGAATGTGGTGTGTTAGTGTTAGCTTCAT-AATCTCAGGACCTA  949

seq1  AGCTAAGTTAACTGTCATATCAATGAGGGAACTGTGCTGATAGATGAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGTTAACTGTCATATCAATGAGGGAACTGTGCTGATAGATGAAAA  999

seq1  AACAAACAAACAAACAAACAAACAAACAAATCCCAAACTCAAACAAGCAA  1050
      ||||||||||| ||||||| ||||||| |||| | |||||||   |||||
seq2  AACAAACAAAC-AACAAAC-AACAAAC-AATCTC-AACTCAA--CAGCAA  1043

seq1  GCCAAACCAAACAGTGCTTCAGAGGAGAACAAGATTAAGTGAAGACAGTG  1100
      |||||| ||||||||||||| ||| ||||||||| |||  ||| ||||||
seq2  GCCAAA-CAAACAGTGCTTC-GAGAAGAACAAGAATAATGGAAAACAGTG  1091

seq1  CAATCAGCACTTAGAGCCATATTCCAAATAAAAGTCTGTTAATACACAAC  1150
      | |||| |||||| || |||||||| ||||||||||||||||||| ||||
seq2  C-ATCA-CACTTAAAG-CATATTCC-AATAAAAGTCTGTTAATACCCAAC  1137

seq1  AAGCAAATTCCACTCACAAAATCATGGGAAGATATCAATTTATTTAAGTA  1200
      ||||||  ||| ||| ||||   |  ||||||||||||||   |||||| 
seq2  AAGCAA--TCC-CTCCCAAA---ACTGGAAGATATCAATT--ATTAAGT-  1178

seq1  TCACACCCATGGGTTACTTTATTAAATGTGGCCTTTCAGAATTATTTTTT  1250
         |  ||||||| ||||| || ||   ||||  ||| ||||||    ||
seq2  ---CCACCATGGG-TACTTAATAAA---TGGC--TTC-GAATTA----TT  1214

seq1  GGGCTTTTTTTTGGGGGG  1268
      ||||  ||||||||||||
seq2  GGGC--TTTTTTGGGGGG  1230

seq1: chr14_17370387_17370916
seq2: B6Ng01-046P13.g_144_615 (reverse)

seq1  TTTTTATTAGATATTTTCTTCATTTACATTTCTTTTTTACTATATATTTT  50
                                       ||||||  | | |||||
seq2  ---------------------------------TTTTTATCAGACATTTT  17

seq1  CTTTATATACATTTCAAATTTCAAATGCTATCCCAAAAGTTCCCTATAAC  100
      ||| || |||       ||||||||||||||||  ||||| ||||||| |
seq2  CTTCATTTAC-------ATTTCAAATGCTATCCTGAAAGTCCCCTATACC  60

seq1  CTCCC-CCTGCCCTGCTTCCCTACCCACCCATTCCTGCTTCTTGGCTCTG  149
      ||||| || |||||||| ||||||||||||| |||  | ||||||| |||
seq2  CTCCCTCCCGCCCTGCTCCCCTACCCACCCAATCCCACGTCTTGGCCCTG  110

seq1  GCATTCCCCTGTACTGGGGCATATAAAGTTTGCAATATCAAGGGGCCTCT  199
      |||||||||||||||||||| |||||||||||||| | |||| |||||||
seq2  GCATTCCCCTGTACTGGGGCGTATAAAGTTTGCAAGACCAAGAGGCCTCT  160

seq1  CTTCCCAGTGGTGGTTGACTAGGCCATCTTCTGCTACATATGCAGCTAGA  249
      ||||||| || |||   |||||||||||||||||| ||||||||||||||
seq2  CTTCCCAATGATGGCCTACTAGGCCATCTTCTGCTGCATATGCAGCTAGA  210

seq1  GACAAGAGCTCTGGGGGTACTGGTTAGTTGATAATGTTGTTCCACCTATA  299
      |||| |||||||||||||||||||||||| |||||||||||| |||||||
seq2  GACATGAGCTCTGGGGGTACTGGTTAGTTCATAATGTTGTTCGACCTATA  260

seq1  GGGTTGCAGACCCCTTCAGCTCCTTGGGTGCTTTCTCTAGCTTCTCCATT  349
      |||||||||||||||||||||| |||||| |||||||||||| |||||||
seq2  GGGTTGCAGACCCCTTCAGCTCATTGGGTACTTTCTCTAGCTCCTCCATT  310

seq1  GGGGGCCCTGTGTTCTATCCAATAGATGACTGTGAGCATCCACTTCTGTA  399
      ||||||||||||||| |||||||||||||||||||               
seq2  GGGGGCCCTGTGTTCCATCCAATAGATGACTGTGA---------------  345

seq1  TTTGCTAGGCACTGGCATAACCTCACACGAGACAGCTATACCAGGGTCCC  449
         || ||||||||||||| |||||||| ||||||||||| |  ||| | 
seq2  ---GCCAGGCACTGGCATAGCCTCACACAAGACAGCTATATCCAGGTTCT  392

seq1  TTCATCAAAATCTTGCCGGCATATGCAATAGTGTCTGGGTTTGGTGGCTG  499
      ||||  |||||||||| || |||||||||||||||    |||| ||||||
seq2  TTCAGGAAAATCTTGCTGGTATATGCAATAGTGTCCATATTTGATGGCTG  442

seq1  ATTATGGGATGGATCCCTGGGTGGGGTAGTC  530
      ||||||||||||||||| |||||||||||||
seq2  ATTATGGGATGGATCCC-GGGTGGGGTAGTC  472