BAC Information

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BAC

Clone NameB6Ng01-047A03
Chromosome4 (Build37)8 (Build37)
Map Location 90,600,687 - 90,601,86981,009,874 - 81,010,357
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfp352, LOC619842, LOC435792, Ppia-ps4_804.1
Downstream geneLOC664840, LOC664848, LOC100042274, Elavl2, LOC664864, LOC620016, LOC654475
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047A03.bB6Ng01-047A03.g
ACCDH871993DH871994
length1,163971
definitionDH871993|Mus musculus domesticus DNA, BAC clone: B6Ng01-047A03, 5' end.DH871994|Mus musculus domesticus DNA, BAC clone: B6Ng01-047A03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(90,600,687 - 90,601,869)(81,009,874 - 81,010,357)
sequence
gaattcctatgctgtcatgtgtctttgatatgtaaatccaaaaggtttgg
gtacatatccattcagaatattgcacaaaagcagtaaaagttcaatttca
catttacaaactctcactttgtagaaatttattacttaagtaatgtttca
ttcacaaaataaccaaaaagctttcttggaaaatgcaatgaaatatggta
gttactccaaaattaaaaatagaattaccatatgatctaacttctgcgca
tatctgcaaaaaatatttcaaatgaagatcttgaagacacacttgcacac
tcatgttcatagcagcattcacagcagttactaggttgctatatctcagg
tgccctctcacataaataaattatgatatacaaatgaagggggatattat
taaatcttgtcaagatgatgcatgttacatcatgaatgagtcttgagaga
agtatatgatgtgaaataacccaggaaaagcagacaaattgctctatgat
ttcattcacattactatctgtgacagccagattcacagaaagaggttcaa
tggtgattagtagaggatccaggagtaagcaaatggctaatttttgctta
gtgaggaaagaatttcagttttgcaaactgaaatattcagtaggtcagga
ctgtacactgtgaagtagtcgaaatacacattatataaaatattttttag
ccaaccactattttaatgcattgacaggctttagggatgttctatgttaa
ttttatttttattatttcatttatgtttattaagtatgtgccgtataatt
gtagttttataagtaatacaataaaggcatgtgttacatgtgtaggttga
caaatgtattagttacatgtcttgttgctgtgacaaaatgcctgtcaagc
cacttcaggaagaaaggatttattttgactttcagttcaaagttcaatcc
ttttatggtgggaatttgtctctgaggagcctgagacagctgggcataat
gatccacagtcagagcagaagtgatgaacaccattgtcagcaggtttacc
ctttatttcagcccagatcacaagccatgatagtaccacccacatttggg
ttgtgctttcaccctacctcggccctgatcatattcatctaattaccccc
caatctgttcagg
gaattctttgtttagctctgagccctatttttaatggggttgtttgattt
tctggttatttttttttttattattcaataaagttttattttcccaaatg
cacagctgattgaacctgttcatgaatcctcaccagcagccgtagcttct
ccaccctttgtgtttctggtgtaaattatgtgggcttgtgcttttaaccc
agcttgataagtcctttactaaggagctcctgaagggctgccctggccaa
ggaaccatgaatcttcagtctctcagagaccacggctggagtaataagct
tatagttcggaacctccttacagagcttgtcgtatgttgctttgtcgaac
aggacaagattgttcagcttgtcccgaactttgcctttggaccacttctt
cttcttggccttgccaccagatttatttactgggtctttatcctttttgg
ccaactttccagcatctttcttcttgtcatctttgggtggcatggcgaag
ctcagagagtcatgtggaccacagcagcctcgctaagatggagtctacct
tcttgaattctttatatatattggatattagtcccctatctgatttagga
taggtaaagatcctttcccaatctgttggtggtctttttgtattattgac
agtgtcttttccttacagaagctttgcagtttcatgaggtcccatttgtc
aattcttgctcttacagcacaagccattgctgttctattcaggaatttct
cccctgtgccaatatcttctaggcttttccccactttctcctctataagt
ttcagtgtctctggttttatgtggagctccttgatccacttaggtttgac
ctcagtacacggagataggaatggatcaattcacattcttctaaatgata
acaaccagttgtgccagcacatttgttgaaatgctgtctttttcactgga
tgctttagctccttgtcaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_90600687_90601869
seq2: B6Ng01-047A03.b_45_1207

seq1  GAATTCCTATGCTGTCATGTGTCTTTGATATGTAAATCCAAAAGGTTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATGCTGTCATGTGTCTTTGATATGTAAATCCAAAAGGTTTGG  50

seq1  GTACATATCCATTCAGAATATTGCACAAAAGCAGTAAAAGTTCAATTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATATCCATTCAGAATATTGCACAAAAGCAGTAAAAGTTCAATTTCA  100

seq1  CATTTACAAACTCTCACTTTGTAGAAATTTATTACTTAAGTAATGTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACAAACTCTCACTTTGTAGAAATTTATTACTTAAGTAATGTTTCA  150

seq1  TTCACAAAATAACCAAAAAGCTTTCTTGGAAAATGCAATGAAATATGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAAATAACCAAAAAGCTTTCTTGGAAAATGCAATGAAATATGGTA  200

seq1  GTTACTCCAAAATTAAAAATAGAATTACCATATGATCTAACTTCTGCGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTCCAAAATTAAAAATAGAATTACCATATGATCTAACTTCTGCGCA  250

seq1  TATCTGCAAAAAATATTTCAAATGAAGATCTTGAAGACACACTTGCACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCAAAAAATATTTCAAATGAAGATCTTGAAGACACACTTGCACAC  300

seq1  TCATGTTCATAGCAGCATTCACAGCAGTTACTAGGTTGCTATATCTCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTCATAGCAGCATTCACAGCAGTTACTAGGTTGCTATATCTCAGG  350

seq1  TGCCCTCTCACATAAATAAATTATGATATACAAATGAAGGGGGATATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCTCACATAAATAAATTATGATATACAAATGAAGGGGGATATTAT  400

seq1  TAAATCTTGTCAAGATGATGCATGTTACATCATGAATGAGTCTTGAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTTGTCAAGATGATGCATGTTACATCATGAATGAGTCTTGAGAGA  450

seq1  AGTATATGATGTGAAATAACCCAGGAAAAGCAGACAAATTGCTCTATGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATGATGTGAAATAACCCAGGAAAAGCAGACAAATTGCTCTATGAT  500

seq1  TTCATTCACATTACTATCTGTGACAGCCAGATTCACAGAAAGAGGTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCACATTACTATCTGTGACAGCCAGATTCACAGAAAGAGGTTCAA  550

seq1  TGGTGATTAGTAGAGGATCCAGGAGTAAGCAAATGGCTAATTTTTGCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATTAGTAGAGGATCCAGGAGTAAGCAAATGGCTAATTTTTGCTTA  600

seq1  GTGAGGAAAGAATTTCAGTTTTGCAAACTGAAATATTCAGTAGGTCAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGAAAGAATTTCAGTTTTGCAAACTGAAATATTCAGTAGGTCAGGA  650

seq1  CTGTACACTGTGAAGTAGTCGAAATACACATTATATAAAATATTTTTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACACTGTGAAGTAGTCGAAATACACATTATATAAAATATTTTTTAG  700

seq1  CCAACCACTATTTTAATGCATTGACAGGCTTTAGGGATGTTCTATGTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCACTATTTTAATGCATTGACAGGCTTTAGGGATGTTCTATGTTAA  750

seq1  TTTTATTTTTATTATTTCATTTATGTTTATTAAGTATGTGCCGTATAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTTATTATTTCATTTATGTTTATTAAGTATGTGCCGTATAATT  800

seq1  GTAGTTTTATAAGTAATACAAT-AAGGCATGTGTTACATGTGTAGGTTGA  849
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GTAGTTTTATAAGTAATACAATAAAGGCATGTGTTACATGTGTAGGTTGA  850

seq1  CAAATGTATTAGTTACATGTCTTGTTGCTGTGACAAAATGCCTGTCAAGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTATTAGTTACATGTCTTGTTGCTGTGACAAAATGCCTGTCAAGC  900

seq1  CACTTCAGGAAGAAAGGATTTATTTTGACTTTCAGTTCAAAGTTCAATCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCAGGAAGAAAGGATTTATTTTGACTTTCAGTTCAAAGTTCAATCC  950

seq1  -TTTATGGTGGGAATTTGTCTCTGAAGGAGCCTGAGACAGCTGGGCATAA  998
       ||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTTTATGGTGGGAATTTGTCTCTG-AGGAGCCTGAGACAGCTGGGCATAA  999

seq1  TGAATCCAACAGTCAAGAGCAGAAAGTGATGAACACCATTGTCCAGCAGG  1048
      || |||| |||||| ||||||| ||||||||||||||||||| ||||| |
seq2  TG-ATCC-ACAGTC-AGAGCAG-AAGTGATGAACACCATTGT-CAGCA-G  1043

seq1  GTTTACCCTTTTATTTCAGCCCAGAATCACAAGCCATGATAAGGTACCAC  1098
      |||||||| ||||||||||||||| ||||||||||||||||  |||||||
seq2  GTTTACCC-TTTATTTCAGCCCAG-ATCACAAGCCATGATA--GTACCAC  1089

seq1  CCACATTTTGGGTTGTGCTTTTCCACCCTACTTC-GCCCTGTATCAATTA  1147
      ||||| |||||||||||||||  |||||||| || |||||| ||||  | 
seq2  CCACA-TTTGGGTTGTGCTTT--CACCCTACCTCGGCCCTG-ATCATAT-  1134

seq1  ATCTCATCTAATTAACCCCTCACAATCATGTTCAGG  1183
         ||||||||||| ||||   ||||| ||||||||
seq2  ---TCATCTAATTACCCCC---CAATC-TGTTCAGG  1163

seq1: chr8_81009874_81010357
seq2: B6Ng01-047A03.g_124_605

seq1  --TTTTTTTTTTTGATTCAATAAAGTTTTATTTTCCCAAATGTACAGCTG  48
        ||||||||| | |||||||||||||||||||||||||||| |||||||
seq2  TTTTTTTTTTTATTATTCAATAAAGTTTTATTTTCCCAAATGCACAGCTG  50

seq1  ATTGAACCTGTTCATGCATCTTCGCCAGCAGCTGGAGCGTCTCCACCCTT  98
      |||||||||||||||| ||| || |||||||| | ||| |||||||||||
seq2  ATTGAACCTGTTCATGAATCCTCACCAGCAGCCGTAGCTTCTCCACCCTT  100

seq1  TGTGTTTCTGGTGTAAATTATTTGGGCTCTGTGCTTTGAAACCAGCTAGA  148
      ||||||||||||||||||||| |||||| |||||||| || |||||| ||
seq2  TGTGTTTCTGGTGTAAATTATGTGGGCT-TGTGCTTTTAACCCAGCTTGA  149

seq1  TAAGTCCTTTACTAAGGAGCTCCTGAAGGGCTGCCCTGGCCAAGGAACCG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAAGTCCTTTACTAAGGAGCTCCTGAAGGGCTGCCCTGGCCAAGGAACCA  199

seq1  CGAATCTTCAGTCTCTCAGAGACCACAGCTGGAGTAATAAGCTTATAGTT  248
       ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGAATCTTCAGTCTCTCAGAGACCACGGCTGGAGTAATAAGCTTATAGTT  249

seq1  CGGAACCTCCTTACAGAGCTTGTCGTATGTCGCTTTGTCGAACAGGACAA  298
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CGGAACCTCCTTACAGAGCTTGTCGTATGTTGCTTTGTCGAACAGGACAA  299

seq1  GATTGTTCAACTTGTCCCGAACTTTGCCTTTGGACCACTTCTTCTTCTTG  348
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTCAGCTTGTCCCGAACTTTGCCTTTGGACCACTTCTTCTTCTTG  349

seq1  GCCTTGCCACCAGATTTATTTACTGGGTCTTTATCCTTTTTGGCCGACTT  398
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCCTTGCCACCAGATTTATTTACTGGGTCTTTATCCTTTTTGGCCAACTT  399

seq1  TCCGGCATCTTTCTTCTTCTTGTCGTCTTTGGGCGGCATGGCGAAGCTCA  448
      ||| ||||||   ||||||||||| |||||||| ||||||||||||||||
seq2  TCCAGCATCT---TTCTTCTTGTCATCTTTGGGTGGCATGGCGAAGCTCA  446

seq1  GAGAGTCGTGTGGACCACAGCAGCCTCGCTAAGATG  484
      ||||||| ||||||||||||||||||||||||||||
seq2  GAGAGTCATGTGGACCACAGCAGCCTCGCTAAGATG  482