BAC Information

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BAC

Clone NameB6Ng01-047A10
Chromosome8 (Build37)
Map Location 100,644,471 - 100,735,331
singlet/doubletdoublet
Overlap geneLOC100041173
Upstream geneLOC333331, LOC546090, LOC636859, EG384885
Downstream geneEG636915, Cdh8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047A10.bB6Ng01-047A10.g
ACCDH872007DH872008
length6311,093
definitionDH872007|Mus musculus domesticus DNA, BAC clone: B6Ng01-047A10, 5' end.DH872008|Mus musculus domesticus DNA, BAC clone: B6Ng01-047A10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,644,471 - 100,645,101)(100,734,781 - 100,735,331)
sequence
gaattcaatcctctatgtagcagaagatgactttgaactacagacttttt
caatttgcacttcccaagtgctgttgctatagatgttgtagaatcacaac
aagccataaccatttttataagcttttctaaattcctactcctcctttct
ccctccctccccctctacttccatctcctgttcccccatcaatgcaggac
agaagcgtctgccccctggtcttccttctacaatccatatggtctgtggg
ctgtatcttgagagagatacagagggtcaggaaatcgaataaaaagatgt
agcaggggggcatgaggaactgggcacagccactggagggtcccagacac
cagagacacatggagctcccaggacataatggaattgacttcagacctaa
ttcatagagagggaggatatagaacctgtagagaccatttccagtagata
ggcacaccgttagtccagggatggggccacccacccacctcaaagttttt
taacccagaaatgtttctgtctaaaggaagaacagagacagaaaatggaa
cagagactaaaggaaaggccaaccagggaacaacatcccacctggggcta
tatcgtgttttcagacaccaaactcaacact
gaattctatcccaggtggttcctctggtgtttatattcctctgttttgtg
taagaatccagtaacctctttgtaccttgctggtgtgtcacccaacttcc
ctattttcttctgtataaaacgtttgatgctcgatttgacaaattacatt
cagattctacacaacctctcctgtgtacatctgtctgtcattccatccaa
cgctttgcccacctgcaactagagacccgttccacgcagacaaaggggct
cagaggatctgcagcattcttacctccttgtacaaagctcaagtctaagt
tggtcaaagacctccacataaaactagagacactgaaatttatagaggag
aaagcgggaaaagcctcaaaagtgtgggcacaggggaaaaaattcctgaa
cagaataccaatggcttgtgctgtaagatcaagaattgacaaatgggacc
tcataaaattgcaaagcttctgtaaggcaaaagatactgtcaataagaca
aaaaggccaccaacctatttttatagaaggtgaatgtcatagatgagata
aaaactttttttttgtattctgttttccaaatgtgaatgatgaatattca
ttagcaacataaagggataaaaataagcttccagcttataagaaatggaa
cactgatcatgtgtgtcattgaggcacactgatgataacatattagtgtt
tccatacttctttaaaagaatgacttgctttgtcttccttagggtttaac
acagtccatgtaacttccattaatgaagcgacgaagtaaaaaaatgacaa
agtatgttccactgtaagtaacaagtggtgtttgggaggaattttttatt
aaagttgtcaggacttctgagaacttcaaatacatagaaacacagaaaat
gaatgtataaaagggtgaagatgagaaggaaacaaatttagaggaggaga
taaggcagtgagaggagatatattagagacggaggcaggagaagaaagga
ggagagggtaagaaaatggagtacaggaaaggaagactgggagaaacata
ggtaagggagcaggaaggagaatggttgaagagaaagactata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_100644471_100645101
seq2: B6Ng01-047A10.b_47_677

seq1  GAATTCAATCCTCTATGTAGCAGAAGATGACTTTGAACTACAGACTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCCTCTATGTAGCAGAAGATGACTTTGAACTACAGACTTTTT  50

seq1  CAATTTGCACTTCCCAAGTGCTGTTGCTATAGATGTTGTAGAATCACAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGCACTTCCCAAGTGCTGTTGCTATAGATGTTGTAGAATCACAAC  100

seq1  AAGCCATAACCATTTTTATAAGCTTTTCTAAATTCCTACTCCTCCTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATAACCATTTTTATAAGCTTTTCTAAATTCCTACTCCTCCTTTCT  150

seq1  CCCTCCCTCCCCCTCTACTTCCATCTCCTGTTCCCCCATCAATGCAGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCTCCCCCTCTACTTCCATCTCCTGTTCCCCCATCAATGCAGGAC  200

seq1  AGAAGCGTCTGCCCCCTGGTCTTCCTTCTACAATCCATATGGTCTGTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCGTCTGCCCCCTGGTCTTCCTTCTACAATCCATATGGTCTGTGGG  250

seq1  CTGTATCTTGAGAGAGATACAGAGGGTCAGGAAATCGAATAAAAAGATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCTTGAGAGAGATACAGAGGGTCAGGAAATCGAATAAAAAGATGT  300

seq1  AGCAGGGGGGCATGAGGAACTGGGCACAGCCACTGGAGGGTCCCAGACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGGGGCATGAGGAACTGGGCACAGCCACTGGAGGGTCCCAGACAC  350

seq1  CAGAGACACATGGAGCTCCCAGGACATAATGGAATTGACTTCAGACCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACACATGGAGCTCCCAGGACATAATGGAATTGACTTCAGACCTAA  400

seq1  TTCATAGAGAGGGAGGATATAGAACCTGTAGAGACCATTTCCAGTAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGAGAGGGAGGATATAGAACCTGTAGAGACCATTTCCAGTAGATA  450

seq1  GGCACACCGTTAGTCCAGGGATGGGGCCACCCACCCACCTCAAAGTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACCGTTAGTCCAGGGATGGGGCCACCCACCCACCTCAAAGTTTTT  500

seq1  TAACCCAGAAATGTTTCTGTCTAAAGGAAGAACAGAGACAGAAAATGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCAGAAATGTTTCTGTCTAAAGGAAGAACAGAGACAGAAAATGGAA  550

seq1  CAGAGACTAAAGGAAAGGCCAACCAGGGAACAACATCCCACCTGGGGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACTAAAGGAAAGGCCAACCAGGGAACAACATCCCACCTGGGGCTA  600

seq1  TATCGTGTTTTCAGACACCAAACTCAACACT  631
      |||||||||||||||||||||||||||||||
seq2  TATCGTGTTTTCAGACACCAAACTCAACACT  631

seq1: chr8_100734781_100735331
seq2: B6Ng01-047A10.g_608_1160 (reverse)

seq1  TATAGTC-TTCTCT--CACCATTCTCCTTCCTGCTCCCTTACCTATGTTT  47
      ||||||| ||||||   |||||||||||||||||||||||||||||||||
seq2  TATAGTCTTTCTCTTCAACCATTCTCCTTCCTGCTCCCTTACCTATGTTT  50

seq1  CT-CCAGTCTTCCTTTCCTGTACT-CATTTTCTTACCCTCTCCT-CTTTC  94
      || ||||||||||||||||||||| ||||||||||||||||||| |||||
seq2  CTCCCAGTCTTCCTTTCCTGTACTCCATTTTCTTACCCTCTCCTCCTTTC  100

seq1  TTCTCTTGCCT-CGTCTCTAATATATCT-CTCTCACTGCCCTTATCTCCT  142
      ||||| ||||| |||||||||||||||| ||||||||| |||||||||||
seq2  TTCTCCTGCCTCCGTCTCTAATATATCTCCTCTCACTG-CCTTATCTCCT  149

seq1  CCTCTAAATTTTGTTTTCCTTCTTCATCTTCACCCTTTTATTACATTTCA  192
      |||||||||||   |||||||| ||||||||||||||||| |||| ||||
seq2  CCTCTAAATTT--GTTTCCTTC-TCATCTTCACCCTTTTA-TACA-TTCA  194

seq1  TTTTCTGTGTTTCTATGTATTTTGAAGTTCTCAGAAGTCCTGACAACTTT  242
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTTCTGTGTTTCTATGTA-TTTGAAGTTCTCAGAAGTCCTGACAACTTT  243

seq1  AATAAAAAATTCCT-CCAAACACCACTTGTTACTTACAGTGGAACATACT  291
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AATAAAAAATTCCTCCCAAACACCACTTGTTACTTACAGTGGAACATACT  293

seq1  TTGTCATTTTTTTACTTCGTCGCTTCATTAATGGAAGTTACATGGACTGT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATTTTTTTACTTCGTCGCTTCATTAATGGAAGTTACATGGACTGT  343

seq1  GTTAAACCCTAAGGAAGACAAAGCAAGTCATTCTTTTAAAGAAGTATGGA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACCCTAAGGAAGACAAAGCAAGTCATTCTTTTAAAGAAGTATGGA  393

seq1  AACACTAATATGTTATCATCAGTGTGCCTCAATGACACACATGATCAGTG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTAATATGTTATCATCAGTGTGCCTCAATGACACACATGATCAGTG  443

seq1  TTCCATTTCTTATAAGCTGGAAGCTTATTTTTATCCCTTTATGTTGCTAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTTCTTATAAGCTGGAAGCTTATTTTTATCCCTTTATGTTGCTAA  493

seq1  TGAATATTCATCATTCACATTTGGAAAACAGAATACAAAAAAAAAGTTTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTCATCATTCACATTTGGAAAACAGAATACAAAAAAAAAGTTTT  543

seq1  TATCTCATCT  551
      ||||||||||
seq2  TATCTCATCT  553