BAC Information

Click to search

BAC

Clone NameB6Ng01-047A16
Chromosome8 (Build37)
Map Location 12,899,677 - 13,031,021
singlet/doubletdoublet
Overlap geneMcf2l, F7
Upstream geneLOC100040155, LOC100040175, EG434280, EG434279, Sox1, 1700094C09Rik, Tubgcp3, Atp11a, LOC100040229
Downstream geneF10, Proz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3, Tfdp1, Atp4b, Grk1, Gm687, Gas6, LOC434282, 1700029H14Rik, Rasa3, 4932443I19Rik, LOC665516, Cdc16, Upf3a, AF366264, D8Ertd457e, 2410022L05Rik, EG665536, Fbxo25, LOC100041103, 2610019F03Rik, EG546036, Erich1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047A16.bB6Ng01-047A16.g
ACCDH872017DH872018
length1,074981
definitionDH872017|Mus musculus domesticus DNA, BAC clone: B6Ng01-047A16, 5' end.DH872018|Mus musculus domesticus DNA, BAC clone: B6Ng01-047A16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,029,928 - 13,031,021)(12,899,677 - 12,900,659)
sequence
gaattctcagggcaaggagtcaaaagggacagacagcgagtctgagaccc
agaatcttagactcataaatcaaaggccatgggtttaaaagaaatactta
atgtctcccagatcaatttccttcaggggccgaggctggcctggacaccc
tctccttactcgatgaggctgttattctctggaaccagtcacccaggccc
ttccctcccgactccatccattgcaaacggaggcaagaagttggtctcac
ttttctcacagttccgaccctcaaagtctaggaggcagaagcagacgtaa
gacttgagatgatcctggcaggtacctccgttctgacatggattcgaggc
acactggtccccatctgtgggtgagctgacattagtgtgctgcaaagaag
gggtgtgggggaggggcacagatggctttcacctactcaccactgtaaac
aatccagaactgcttctgagagggaagaagaagccatgtgaggcacggtc
atgagaagtagcacttagtgtccacggagggagctcaggagctatggctg
gggctcctgacctgggcatctgtgtggggcttgggaagatagcgttcctc
tggagacgaggagggattatctgaggttgatgtttctctacgccctttct
agagatatttaagtcgccacacaattgcctttcccaagtgagcgcaccag
agttctgaccctgatcctgctttctccagttctgggctggacctctaaat
gtgggaggtgtcatcccatgggagttctggtctgaataaagaggagatag
tgagctcaacaccagcatcccttactctctacctcctgactggatgcgct
gtgactgtcacgccttccctgactcctgaacgaccaaccagataaacctg
tctttcctcagttatttctgtcagtgttgcttcagtcgtgagaaagcagc
ttctcaggctcctgtgtgagttgctctgagtgagtgtgaggcacttgtag
agagtgtccgtctatttcctgtgtggacaattctttggtttgtgctatcc
ggggaatgaggttcctctggaggt
gaattcttttttgttgtgatattgagctgaggattggaagctatttgggg
ggactctgcctcttcctcccccctccccccaccagtggcacatctatctg
tcattatctaagaaaaacatgcatggcctcgacctctgccagcaattcca
ccctgaagtgctgcctgggcaccacttgtcctgcaccgactcgatgaggt
gggaagaggcaggcaacctttctttcagacaatcatgacctccactagtg
tgtagcaaacactgatcccagctgtataggttcttggctgggtagatgtt
aacttgggcaggttaactcaaatccagtgaccttgacgtcagcctttgaa
aatacatcttccaagttaaggcttcactaaatagaaattctaagactgca
gtgaatgtctggcccttcaagcagaatgtcggaaagcaaaggaagggacg
aggagcacggagagtcaggggcggggagcacggagagtctgaggcttccc
ggtgcccaggtgcagtgtagactgcactcctgctgggcaggtgccaggcg
gccaggcacaacactgtcctgtgtcactgtttctggagatcccagggtga
tcatgggcacgtcctgtctccattgctgctggcctcctccacttagtggg
aacagagaggaatgcacggggcacacacaccgggactccgtcgccttgcc
aaaaggagcagtgtgaacttaggttctgagtaacttcttccttccctgtg
tatttggggttactttgtgcttatgtgggtgtttgtctggccatatttga
tgaaactgaaaacaagcaaaataaacgttcgaagtctactgctgcacctt
ttgagcagggcttgccgactagaagctggtgtttccagaagtcactgaag
cggtgtgacgtgttggtgtgtccatctcactgtgtagagctaaagcctta
tgggatggactttcagatgtgacccgtgtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_13029928_13031021
seq2: B6Ng01-047A16.b_45_1118 (reverse)

seq1  ACCTCACAGAGGAACCCTCATTCCCACAGGATAGCTCACAAACCCAAAGA  50
      ||||| |||||||| |||||||||  | ||||||  |||||| |||||||
seq2  ACCTC-CAGAGGAA-CCTCATTCC--CCGGATAG--CACAAA-CCAAAGA  43

seq1  ATGTTCCACACAGGAAATTACACCGCACACTTCTCTCACAAGTGCCCTCA  100
      ||  ||||||||||||| || | || |||| ||||| ||||||| |||||
seq2  ATTGTCCACACAGGAAA-TAGA-CGGACAC-TCTCT-ACAAGTG-CCTCA  88

seq1  CACTCACTCAGAGCAACTCACACAGGGAGCCTGGAGAAGCTGCTTTCCTC  150
      |||||||||||||||||||||||| ||||||| ||||||||||||| |||
seq2  CACTCACTCAGAGCAACTCACACA-GGAGCCT-GAGAAGCTGCTTT-CTC  135

seq1  ACTGACTGGAGCAACCACCTGACAGAAATAACTGGAGGAAAGACAGGTTT  200
      || ||||| ||||||   ||||||||||||||| ||||||||||||||||
seq2  AC-GACTGAAGCAAC--ACTGACAGAAATAACT-GAGGAAAGACAGGTTT  181

seq1  ATTCTGGTTGGTCGTTCAGGAGTCAGGGAAGGCGTGACAGTCACAGCGCA  250
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TCTGGTTGGTCGTTCAGGAGTCAGGGAAGGCGTGACAGTCACAGCGCA  230

seq1  TCCAGTCAGGAGGTAGAGAGTAAGGGATGCTGGTGTTGAGCTCACTATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCAGGAGGTAGAGAGTAAGGGATGCTGGTGTTGAGCTCACTATCT  280

seq1  CCTCTTTATTCAGACCAGAACTCCCATGGGATGACACCTCCCACATTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTATTCAGACCAGAACTCCCATGGGATGACACCTCCCACATTTAG  330

seq1  AGGTCCAGCCCAGAACTGGAGAAAGCAGGATCAGGGTCAGAACTCTGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCAGCCCAGAACTGGAGAAAGCAGGATCAGGGTCAGAACTCTGGTG  380

seq1  CGCTCACTTGGGAAAGGCAATTGTGTGGCGACTTAAATATCTCTAGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCACTTGGGAAAGGCAATTGTGTGGCGACTTAAATATCTCTAGAAAG  430

seq1  GGCGTAGAGAAACATCAACCTCAGATAATCCCTCCTCGTCTCCAGAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTAGAGAAACATCAACCTCAGATAATCCCTCCTCGTCTCCAGAGGAA  480

seq1  CGCTATCTTCCCAAGCCCCACACAGATGCCCAGGTCAGGAGCCCCAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTATCTTCCCAAGCCCCACACAGATGCCCAGGTCAGGAGCCCCAGCCA  530

seq1  TAGCTCCTGAGCTCCCTCCGTGGACACTAAGTGCTACTTCTCATGACCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCTGAGCTCCCTCCGTGGACACTAAGTGCTACTTCTCATGACCGT  580

seq1  GCCTCACATGGCTTCTTCTTCCCTCTCAGAAGCAGTTCTGGATTGTTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCACATGGCTTCTTCTTCCCTCTCAGAAGCAGTTCTGGATTGTTTAC  630

seq1  AGTGGTGAGTAGGTGAAAGCCATCTGTGCCCCTCCCCCACACCCCTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGAGTAGGTGAAAGCCATCTGTGCCCCTCCCCCACACCCCTTCTT  680

seq1  TGCAGCACACTAATGTCAGCTCACCCACAGATGGGGACCAGTGTGCCTCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCACACTAATGTCAGCTCACCCACAGATGGGGACCAGTGTGCCTCG  730

seq1  AATCCATGTCAGAACGGAGGTACCTGCCAGGATCATCTCAAGTCTTACGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATGTCAGAACGGAGGTACCTGCCAGGATCATCTCAAGTCTTACGT  780

seq1  CTGCTTCTGCCTCCTAGACTTTGAGGGTCGGAACTGTGAGAAAAGTGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCTGCCTCCTAGACTTTGAGGGTCGGAACTGTGAGAAAAGTGAGA  830

seq1  CCAACTTCTTGCCTCCGTTTGCAATGGATGGAGTCGGGAGGGAAGGGCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTCTTGCCTCCGTTTGCAATGGATGGAGTCGGGAGGGAAGGGCCT  880

seq1  GGGTGACTGGTTCCAGAGAATAACAGCCTCATCGAGTAAGGAGAGGGTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGACTGGTTCCAGAGAATAACAGCCTCATCGAGTAAGGAGAGGGTGT  930

seq1  CCAGGCCAGCCTCGGCCCCTGAAGGAAATTGATCTGGGAGACATTAAGTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCAGCCTCGGCCCCTGAAGGAAATTGATCTGGGAGACATTAAGTA  980

seq1  TTTCTTTTAAACCCATGGCCTTTGATTTATGAGTCTAAGATTCTGGGTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTAAACCCATGGCCTTTGATTTATGAGTCTAAGATTCTGGGTCT  1030

seq1  CAGACTCGCTGTCTGTCCCTTTTGACTCCTTGCCCTGAGAATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCGCTGTCTGTCCCTTTTGACTCCTTGCCCTGAGAATTC  1074

seq1: chr8_12899677_12900659
seq2: B6Ng01-047A16.g_68_1048

seq1  GAATTCTTTTTTGTTGTGATATTGAGCTGAGGATTGGAAGCTATTTGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTGTTGTGATATTGAGCTGAGGATTGGAAGCTATTTGGGG  50

seq1  GGACTCTGCCTCTTCCTCCCCCCTCCCCCCACCAGTGGCACATCTATCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTGCCTCTTCCTCCCCCCTCCCCCCACCAGTGGCACATCTATCTG  100

seq1  TCATTATCTAAGAAAAACATGCATGGCCTCGACCTCTGCCAGCAATTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATCTAAGAAAAACATGCATGGCCTCGACCTCTGCCAGCAATTCCA  150

seq1  CCCTGAAGTGCTGCCTGGGCACCACTTGTCCTGCACCGACTCGATGAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAAGTGCTGCCTGGGCACCACTTGTCCTGCACCGACTCGATGAGGT  200

seq1  GGGAAGAGGCAGGCAACCTTTCTTTCAGACAATCATGACCTCCACTAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAGGCAGGCAACCTTTCTTTCAGACAATCATGACCTCCACTAGTG  250

seq1  TGTAGCAAACACTGATCCCAGCTGTATAGGTTCTTGGCTGGGTAGATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCAAACACTGATCCCAGCTGTATAGGTTCTTGGCTGGGTAGATGTT  300

seq1  AACTTGGGCAGGTTAACTCAAATCCAGTGACCTTGACGTCAGCCTTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGGCAGGTTAACTCAAATCCAGTGACCTTGACGTCAGCCTTTGAA  350

seq1  AATACATCTTCCAAGTTAAGGCTTCACTAAATAGAAATTCTAAGACTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATCTTCCAAGTTAAGGCTTCACTAAATAGAAATTCTAAGACTGCA  400

seq1  GTGAATGTCTGGCCCTTCAAGCAGAATGTCGGAAAGCAAAGGAAGGGACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGTCTGGCCCTTCAAGCAGAATGTCGGAAAGCAAAGGAAGGGACG  450

seq1  AGGAGCACGGAGAGTCAGGGGCGGGGAGCACGGAGAGTCTGAGGCTTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCACGGAGAGTCAGGGGCGGGGAGCACGGAGAGTCTGAGGCTTCCC  500

seq1  GGTGCCCAGGTGCAGTGTAGACTGCACTCCTGCTGGGCAGGTGCCAGGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCCAGGTGCAGTGTAGACTGCACTCCTGCTGGGCAGGTGCCAGGCG  550

seq1  GCCAGGCACAACACTGTCCTGTGTCACTGTTTCTGGAGATCCCAGGGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCACAACACTGTCCTGTGTCACTGTTTCTGGAGATCCCAGGGTGA  600

seq1  TCATGGGCACGTCCTGTCTCCATTGCTGCTGGCCTCCTCCACTTAGTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGCACGTCCTGTCTCCATTGCTGCTGGCCTCCTCCACTTAGTGGG  650

seq1  AACAGAGAGGAATGCACGGGGCACACACACCGGGACTCCGTCGCCTTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGAGGAATGCACGGGGCACACACACCGGGACTCCGTCGCCTTGCC  700

seq1  AAAAGGAGCAGTGTGAACTTAGGTTCTGAGTAACTTCTTCCCTTCCCTGT  750
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAAAGGAGCAGTGTGAACTTAGGTTCTGAGTAACTTCTT-CCTTCCCTGT  749

seq1  GTATTTGGGGTTACTTTGTGCTTATGTGGGTGTTTGTCTGGCCATATTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGGGGTTACTTTGTGCTTATGTGGGTGTTTGTCTGGCCATATTTG  799

seq1  ATGAAACTGAAAACAAGCAAAATAAAACGTTCGAAGTCTACTGCTGCACC  850
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATGAAACTGAAAACAAGCAAAAT-AAACGTTCGAAGTCTACTGCTGCACC  848

seq1  -TCTGAGCAGGGCTTGCCGACTAGAAGCTGGTGTTTTCCAGAAGTCACTG  899
       | |||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTTGAGCAGGGCTTGCCGACTAGAAGCTGGTG-TTTCCAGAAGTCACTG  897

seq1  AAGCGGTGTGACGTGGTGGTGTGTCCATCTCACTGTGTAGAGCTAAGGCC  949
      ||||||||||||||| |||||||||||||||||||||||||||||| |||
seq2  AAGCGGTGTGACGTGTTGGTGTGTCCATCTCACTGTGTAGAGCTAAAGCC  947

seq1  -TATGGGATGGACTTCCAGAATGTGACCCGTGTCC  983
       |||||||||||||| ||| |||||||||||||||
seq2  TTATGGGATGGACTTTCAG-ATGTGACCCGTGTCC  981