BAC Information

Click to search

BAC

Clone NameB6Ng01-047E23
Chromosome8 (Build37)
Map Location 17,580,411 - 17,663,698
singlet/doubletdoublet
Overlap genenone
Upstream geneCsmd1
Downstream geneLOC665638, LOC100040466, Mcph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047E23.bB6Ng01-047E23.g
ACCDH872209DH872210
length948460
definitionDH872209|Mus musculus domesticus DNA, BAC clone: B6Ng01-047E23, 5' end.DH872210|Mus musculus domesticus DNA, BAC clone: B6Ng01-047E23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,662,746 - 17,663,698)(17,580,411 - 17,580,876)
sequence
gaattcttttcagtccctactattggatagatcatatctagctttcaaac
aagcaagatcaattaagtaaaaatacttttcagaaaaagaaaaggaatat
gaagtaaaggaagcagggaagagagcagagggtgagagtagagaaaattt
agagaattcagttgttagattctgggagtacagcaatataccacaaatag
attagtgtgttaggattggaataaaaaactgcaaatccatgggaaactaa
aagacttagagaagtccagagtggacactgcaaggagcaccaaaagttcc
tgcctaacatagagaaagtctctgctggctctataaaggaaacatcaagg
ctgtacttatgtactcagagtgtgggaatggattgaatcttcccagcttt
agtataaggtaatttggcttgaagttgaagtagtgatcactggaatgcca
agtggggaaaggaggagtgaactgaagaagcttatggaataaccatgaag
atgaagtctacaaatctatcacatgcacaaaccaggttaagggagctcag
gactcacaagctagggaagatgggtcagacatctcctgggcttattggtt
tggtttgtgtatagtgtgtctttctttctcaaaagagaaatacaaaaaca
taagaagaaacaagattaaaattttctattcattcatatcgaaagcagga
aagcgtagaggaggttgaaaaagaagaagagaaaaagagcaagaggaaga
ggaaaaggaagaagagcagaagaggatgaaaagaatgggaagaagaggtg
aagaggaagaaggcaaaagaaggaagagaagaagcaaggagtgataagag
agacaggaggatgagcataagggggaggagaaaagagaaaggatttctac
agaatctataaacaagcagagtgcccactaatgcatttaaatgtgaga
cgtggttgaatcggagaactgattcctagaagttgacctctgacttcctc
acatggcctggggcatgcagacatccacatacatacaaacacaaagtgaa
aataaatacatatttttaaaaaaatcaaccaagtgagaagcattcacata
tctacagctgagaaacatcctttgaaaaattgcattatgtcataaatgat
ctgtctacatgatacaggctaacagagtgaactaagcccttgttgctcat
gttaaaggcttgatgattttcacttagcagctgcatggacttctagaatt
ctaattctcagttattccagacaaatattcactaaaagttgtcagcatct
aattttttatgggggtgggggatgtagaggactgttaaatctgctggggt
attttagtggctttaataatgcaataacattggaaagaagattggtaaca
gtattgccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_17662746_17663698
seq2: B6Ng01-047E23.b_45_985 (reverse)

seq1  TTTAAATGCATTAGTGGGCACTCTGCTTGTTTATAGATTTCTGTAGAAAT  50
      ||||||||||||||||||||||||||||||||||||| ||||||||||| 
seq2  TTTAAATGCATTAGTGGGCACTCTGCTTGTTTATAGA-TTCTGTAGAAA-  48

seq1  TCCTTTCTCTTTTCTCCTCCCCCTTATGCTCATCCTCCTTGTCTCTCTTT  100
      |||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  TCCTTTCTCTTTTCTCCTCCCCCTTATGCTCATCCTCC-TGTCTCTC-TT  96

seq1  ATCACTCCTTGCTTTCTTCTCTTCCCTTCTTTTTGCCTTCTTCCTCTTTC  150
      |||||||||||| |||||||||| ||||| |||||||||||||||| |||
seq2  ATCACTCCTTGC-TTCTTCTCTT-CCTTC-TTTTGCCTTCTTCCTC-TTC  142

seq1  ACCTCTTCTTCCCATTCTTTTTCATCCTCTTCCTGCTCTTCTTCCTTTTC  200
      ||||||||||||||||| ||||||||||||| ||||||||||||||||||
seq2  ACCTCTTCTTCCCATTC-TTTTCATCCTCTT-CTGCTCTTCTTCCTTTTC  190

seq1  CTCTTCCTCTTGCTCTTTTTTCTCTTCTTCTTTTTCAACCTCCTCCTACG  250
      ||||||||||||||| |||||||||||||||||||||||||||| |||||
seq2  CTCTTCCTCTTGCTC-TTTTTCTCTTCTTCTTTTTCAACCTCCT-CTACG  238

seq1  CTTTCCTGCTTTCGATATGAATGAATAGAAAATTTTAATCTTGTTTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGCTTTCGATATGAATGAATAGAAAATTTTAATCTTGTTTCTTC  288

seq1  TTATGTTTTTGTATTTCTCTTTTGAGAAAGAAAGACACACTATACACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTTTTGTATTTCTCTTTTGAGAAAGAAAGACACACTATACACAAA  338

seq1  CCAAACCAATAAGCCCAGGAGATGTCTGACCCATCTTCCCTAGCTTGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCAATAAGCCCAGGAGATGTCTGACCCATCTTCCCTAGCTTGTGA  388

seq1  GTCCTGAGCTCCCTTAACCTGGTTTGTGCATGTGATAGATTTGTAGACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGAGCTCCCTTAACCTGGTTTGTGCATGTGATAGATTTGTAGACTT  438

seq1  CATCTTCATGGTTATTCCATAAGCTTCTTCAGTTCACTCCTCCTTTCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCATGGTTATTCCATAAGCTTCTTCAGTTCACTCCTCCTTTCCCC  488

seq1  ACTTGGCATTCCAGTGATCACTACTTCAACTTCAAGCCAAATTACCTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCATTCCAGTGATCACTACTTCAACTTCAAGCCAAATTACCTTAT  538

seq1  ACTAAAGCTGGGAAGATTCAATCCATTCCCACACTCTGAGTACATAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGCTGGGAAGATTCAATCCATTCCCACACTCTGAGTACATAAGTA  588

seq1  CAGCCTTGATGTTTCCTTTATAGAGCCAGCAGAGACTTTCTCTATGTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTGATGTTTCCTTTATAGAGCCAGCAGAGACTTTCTCTATGTTAG  638

seq1  GCAGGAACTTTTGGTGCTCCTTGCAGTGTCCACTCTGGACTTCTCTAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAACTTTTGGTGCTCCTTGCAGTGTCCACTCTGGACTTCTCTAAGT  688

seq1  CTTTTAGTTTCCCATGGATTTGCAGTTTTTTATTCCAATCCTAACACACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGTTTCCCATGGATTTGCAGTTTTTTATTCCAATCCTAACACACT  738

seq1  AATCTATTTGTGGTATATTGCTGTACTCCCAGAATCTAACAACTGAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATTTGTGGTATATTGCTGTACTCCCAGAATCTAACAACTGAATTC  788

seq1  TCTAAATTTTCTCTACTCTCACCCTCTGCTCTCTTCCCTGCTTCCTTTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATTTTCTCTACTCTCACCCTCTGCTCTCTTCCCTGCTTCCTTTAC  838

seq1  TTCATATTCCTTTTCTTTTTCTGAAAAGTATTTTTACTTAATTGATCTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATTCCTTTTCTTTTTCTGAAAAGTATTTTTACTTAATTGATCTTG  888

seq1  CTTGTTTGAAAGCTAGATATGATCTATCCAATAGTAGGGACTGAAAAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTGAAAGCTAGATATGATCTATCCAATAGTAGGGACTGAAAAGAA  938

seq1  TTC  953
      |||
seq2  TTC  941

seq1: chr8_17580411_17580876
seq2: B6Ng01-047E23.g_66_531

seq1  GAATTCCGTGGTTGAATCGGAGAACTGATTCCTAGAAGTTGACCTCTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGTGGTTGAATCGGAGAACTGATTCCTAGAAGTTGACCTCTGAC  50

seq1  TTCCTCACATGGCCTGGGGCATGCAGACATCCACATACATACAAACACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCACATGGCCTGGGGCATGCAGACATCCACATACATACAAACACAA  100

seq1  AGTGAAAATAAATACATATTTTTAAAAAAATCAACCAAGTGAGAAGCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAATAAATACATATTTTTAAAAAAATCAACCAAGTGAGAAGCATT  150

seq1  CACATATCTACAGCTGAGAAACATCCTTTGAAAAATTGCATTATGTCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATCTACAGCTGAGAAACATCCTTTGAAAAATTGCATTATGTCATA  200

seq1  AATGATCTGTCTACATGATACAGGCTAACAGAGTGAACTAAGCCCTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCTGTCTACATGATACAGGCTAACAGAGTGAACTAAGCCCTTGTT  250

seq1  GCTCATGTTAAAGGCTTGATGATTTTCACTTAGCAGCTGCATGGACTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGTTAAAGGCTTGATGATTTTCACTTAGCAGCTGCATGGACTTCT  300

seq1  AGAATTCTAATTCTCAGTTATTCCAGACAAATATTCACTAAAAGTTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCTAATTCTCAGTTATTCCAGACAAATATTCACTAAAAGTTGTCA  350

seq1  GCATCTAATTTTTTATGGGGGTGGGGGATGTAGAGGACTGTTAAATCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTAATTTTTTATGGGGGTGGGGGATGTAGAGGACTGTTAAATCTGC  400

seq1  TGGGGTATTTTAGTGGCTTTAATAATGCAATAACATTGGAAAGAAGATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTATTTTAGTGGCTTTAATAATGCAATAACATTGGAAAGAAGATTG  450

seq1  GTAACAGTATTGCCAA  466
      ||||||||||||||||
seq2  GTAACAGTATTGCCAA  466