BAC Information

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BAC

Clone NameB6Ng01-047L11
Chromosome8 (Build37)
Map Location 47,701,331 - 47,874,360
singlet/doubletdoublet
Overlap geneCcdc111, Casp3, Irf2
Upstream geneSorbs2, Pdlim3, Ccdc110, 1700029J07Rik, 1810047C23Rik, Ankrd37, Lrp2bp, Snx25, 4933411K20Rik, Slc25a4, LOC621269, LOC100039875, LOC667325, Helt, LOC667337, Acsl1, Mlf1ip
Downstream geneEnpp6, Stox2, 4930448N21Rik, D030016E14Rik, Rwdd4a, LOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047L11.bB6Ng01-047L11.g
ACCDH872501DH872502
length1,037955
definitionDH872501|Mus musculus domesticus DNA, BAC clone: B6Ng01-047L11, 5' end.DH872502|Mus musculus domesticus DNA, BAC clone: B6Ng01-047L11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,701,331 - 47,702,411)(47,873,406 - 47,874,360)
sequence
gaattctttctctcttgaggcccagaacggcttcaggtccctctgggtcc
ccatttacagggcggcttcaggtccctctgagtccccacagtgaggagaa
attacagggcttagatgaaaactatcacctccagatgttttgctctaacg
aacttctctagatgaagtcaacattaacggcaggaaactgctgaggatac
cttatctaaggtatcactttgttaagaacgtttagcacagggaggggtcc
gggcacaaggggtttctcaattagacccttccttgtgaactacagcctcc
acgatgcactgcgagggttgaatgcatcctactgctaaagtccaacagaa
aatggctgattctaacttactttgggagggataatgatagatcaatttgt
ttctggaatctacatttaaccactatggctcttcatgagagcaaaccact
tatctttttctttctttttttttcccccccaagacagggtttctctgtgt
agccctggctgtcctggaactcactctgtagaccaggctggcctcgaact
cagaaatctacctgcctctgcctcccaagtgctgggattaaaggcgtgca
ccaccactgcccgtccacttatccttttaaagcctttgatggaactggaa
aaaataaaaaatgtattatggaaatgcaagagcttgaattccacacgcaa
cgaacggtagacatctgtgtggctacgtgtacgtcagtcccttacatcca
acgaagcaaaggcggtgaaggcaagaggctgctctctggagtacatttgt
ccttaagatattctgggcccctgaaattcgatgctgatcgctgtgctcgt
gtttcgtatatatgcaaaacaaacaaacaaacccacttcccagagtcaga
gtctgatgaatagacgtaaacagtcagagattcagtagtagtcagactct
cactgagagcagagtggacgatggagaagcctcgtgcatgaagagtgata
cgtgcgggcacagctctattctctgccagtctgactg
gaattcaatgcaacccagactcaacgtttatctcgtcgatagccacaata
ctgtagctgattgtttggtttgtccctcaaaggttcataagctggaaact
tgtgaggtaccttttacctagtgaggtacaaggtgacctggtggaacttc
aagaagtagatctactgctaggctatggagccctgatgtcatgagtaggt
ccaaggataggtcccagggggctggatttgttccggaatgaatggtcgtt
agagttctggagaaatatctcaatggttaagagcacagttactcttgcag
aagacccgagcttggttcctagcacccacgtggcaactcacaaccatctg
taattccaactccaaggaagctgatgcctccttctggcctctcgaggcat
ggcatgcagacaggcaaacacacacacacacacacacagagaaaatcact
cttgcaaacaatgggggacttttcatcagcaagccttgcacctcccctaa
aatctaattccaaaagtctctgtccctgtcatgtctgctatatgaggttt
catgttcctgaacctctaagactaaaaacctttctttcataaaaacacaa
tctccagtgtttcatttcaggaacacaaaataaaccaagacatgtgaata
aaaatgtaaaaaaaaaaaaaaaaaaaaaaaaaaccaattagggatttctg
aaatttattttcactatttttcccgctgcatacaacatacacactaaggc
tctcatggtgctgtagttgaagggggagagcaactttccccctcttgatt
tttctgctgaggattcaggtagcctctacactcttaacagaagtctctat
ttctaattctctactaccttataatactaccttttaaaaatggtggtgac
cttactctggccttataattatctacaaaaaaatgtgaaattcctcatcc
ggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_47701331_47702411
seq2: B6Ng01-047L11.b_47_1083

seq1  GAATTCTTTCTCTCTTGAGGCCCAGAACGGCTTCAGGTCCCTCTGGGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTCTCTTGAGGCCCAGAACGGCTTCAGGTCCCTCTGGGTCC  50

seq1  CCATTTACAGGGCGGCTTCAGGTCCCTCTGAGTCCCCACAGTGAGGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTACAGGGCGGCTTCAGGTCCCTCTGAGTCCCCACAGTGAGGAGAA  100

seq1  ATTACAGGGCTTAGATGAAAACTATCACCTCCAGATGTTTTGCTCTAACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGGGCTTAGATGAAAACTATCACCTCCAGATGTTTTGCTCTAACG  150

seq1  AACTTCTCTAGATGAAGTCAACATTAACGGCAGGAAACTGCTGAGGATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTCTAGATGAAGTCAACATTAACGGCAGGAAACTGCTGAGGATAC  200

seq1  CTTATCTAAGGTATCACTTTGTTAAGAACGTTTAGCACAGGGAGGGGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTAAGGTATCACTTTGTTAAGAACGTTTAGCACAGGGAGGGGTCC  250

seq1  GGGCACAAGGGGTTTCTCAATTAGACCCTTCCTTGTGAACTACAGCCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACAAGGGGTTTCTCAATTAGACCCTTCCTTGTGAACTACAGCCTCC  300

seq1  ACGATGCACTGCGAGGGTTGAATGCATCCTACTGCTAAAGTCCAACAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGCACTGCGAGGGTTGAATGCATCCTACTGCTAAAGTCCAACAGAA  350

seq1  AATGGCTGATTCTAACTTACTTTGGGAGGGATAATGATAGATCAATTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTGATTCTAACTTACTTTGGGAGGGATAATGATAGATCAATTTGT  400

seq1  TTCTGGAATCTACATTTAACCACTATGGCTCTTCATGAGAGCAAACCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAATCTACATTTAACCACTATGGCTCTTCATGAGAGCAAACCACT  450

seq1  TATCTTTTTCTTTCTTTTTTTTTCCCCCCCAAGACAGGGTTTCTCTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTTCTTTCTTTTTTTTTCCCCCCCAAGACAGGGTTTCTCTGTGT  500

seq1  AGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACT  550

seq1  CAGAAATCTACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCTACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCA  600

seq1  CCACCACTGCCCGTCCACTTATCCTTTTAAAGCCTTTGATGGAACTGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACTGCCCGTCCACTTATCCTTTTAAAGCCTTTGATGGAACTGGAA  650

seq1  AAAATAAAAAATGTATTATGGAAATGCAAGAGCTTGAATTCCACACGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAAATGTATTATGGAAATGCAAGAGCTTGAATTCCACACGCAA  700

seq1  CGAACGGTAGACATCTGTGTGGCTACGTGTACGTCAGTCCCTTACATCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACGGTAGACATCTGTGTGGCTACGTGTACGTCAGTCCCTTACATCCA  750

seq1  ACGAAGCAAAGGCGGTGAAGGCAAGAGGCTGCTCTCTGGAGTACATTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGCAAAGGCGGTGAAGGCAAGAGGCTGCTCTCTGGAGTACATTTGT  800

seq1  CCTTAAGAATATTCTGGGCCCCTGAAATTCGATGCTGATCGCTGTGCTCG  850
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAG-ATATTCTGGGCCCCTGAAATTCGATGCTGATCGCTGTGCTCG  849

seq1  TGTTTTCGTATATTATGCAAAAACAAAACAAAACAAAACCCACTTCCCAG  900
      || ||||||||| |||||||||   |||||||   |||||||||||||||
seq2  TG-TTTCGTATA-TATGCAAAA--CAAACAAA--CAAACCCACTTCCCAG  893

seq1  AGTCAGAGTCTGAATGAAATAGGACGTAAACCAGTCAGAGATTTCAGTAA  950
      |||||||||||| ||| |||| |||||||| |||||||||| ||||||| 
seq2  AGTCAGAGTCTG-ATG-AATA-GACGTAAA-CAGTCAGAGA-TTCAGTA-  937

seq1  GGTAGTCAGGACCTCTCACTGAGGGAGCAAGAGGTGGACGGAAGTGAAGA  1000
       ||||||||   ||||||||||  |||| ||| |||||||    || |||
seq2  -GTAGTCAG--ACTCTCACTGA--GAGC-AGA-GTGGACG---ATGGAGA  977

seq1  AAGGCCTCGGTGCAATTGAGAGGAAGTAGAATTACCGAGTGCGGGGCACA  1050
      |  ||||| |||||  ||| ||  ||| ||  |||   |||| |||||||
seq2  A--GCCTC-GTGCA--TGA-AG--AGT-GA--TAC---GTGC-GGGCACA  1012

seq1  GCTCTATTTTCTCCTGCCAGAGTTCTGACTG  1081
      |||||||| |   |||||||   ||||||||
seq2  GCTCTATTCT---CTGCCAG---TCTGACTG  1037

seq1: chr8_47873406_47874360
seq2: B6Ng01-047L11.g_70_1024 (reverse)

seq1  ACCCCGGATGGAGGAATTTCACATTTTTTTGGTAGATAATTATAAAGGCA  50
      ||||||||| |||||||||||||||||||| |||||||||||| ||||| 
seq2  ACCCCGGAT-GAGGAATTTCACATTTTTTT-GTAGATAATTAT-AAGGCC  47

seq1  AGAGTAAGGTCAACA-CATTTTT-AAAGGTAGTTATTAT-AGGTAGTAGG  97
      |||||||||||| || ||||||| |||||||| |||||| ||||||||| 
seq2  AGAGTAAGGTCACCACCATTTTTAAAAGGTAG-TATTATAAGGTAGTAGA  96

seq1  GAATTAGAAATAGAGACTCCTGTT-AGAGTGTAGA-GCTAACTGAATCCT  145
      |||||||||||||||||| ||||| |||||||||| |||| |||||||||
seq2  GAATTAGAAATAGAGACTTCTGTTAAGAGTGTAGAGGCTACCTGAATCCT  146

seq1  CAGCAGAAAAATCAAGA-GGGGCAAGTTGCTCT-CCCCTTCAACTACAGC  193
      ||||||||||||||||| |||| |||||||||| ||||||||||||||||
seq2  CAGCAGAAAAATCAAGAGGGGGAAAGTTGCTCTCCCCCTTCAACTACAGC  196

seq1  A-CATGAGAGCCTTAGTGTGTATGTTGTATGCAGCGGGAAAAATAGTGAA  242
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGAGAGCCTTAGTGTGTATGTTGTATGCAGCGGGAAAAATAGTGAA  246

seq1  AATAAATTTCAGAAAATCCCTAATTGTTTTTTTTTTTTTTTTTTTTTTTT  292
      |||||||||||| |||||||||||||    ||||||||||||||||||||
seq2  AATAAATTTCAG-AAATCCCTAATTG---GTTTTTTTTTTTTTTTTTTTT  292

seq1  TTTTTTACATTTTTATTCACATGTCTTGGTTTATTTTGTGTTCCTGAAAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTACATTTTTATTCACATGTCTTGGTTTATTTTGTGTTCCTGAAAT  342

seq1  GAAACACTGGAGATTGTGTTTTTATGAAAGAAAGGTTTTTAGTCTTAGAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACTGGAGATTGTGTTTTTATGAAAGAAAGGTTTTTAGTCTTAGAG  392

seq1  GTTCAGGAACATGAAACCTCATATAGCAGACATGACAGGGACAGAGACTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGGAACATGAAACCTCATATAGCAGACATGACAGGGACAGAGACTT  442

seq1  TTGGAATTAGATTTTAGGGGAGGTGCAAGGCTTGCTGATGAAAAGTCCCC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATTAGATTTTAGGGGAGGTGCAAGGCTTGCTGATGAAAAGTCCCC  492

seq1  CATTGTTTGCAAGAGTGATTTTCTCTGTGTGTGTGTGTGTGTGTGTTTGC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTTGCAAGAGTGATTTTCTCTGTGTGTGTGTGTGTGTGTGTTTGC  542

seq1  CTGTCTGCATGCCATGCCTCGAGAGGCCAGAAGGAGGCATCAGCTTCCTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGCATGCCATGCCTCGAGAGGCCAGAAGGAGGCATCAGCTTCCTT  592

seq1  GGAGTTGGAATTACAGATGGTTGTGAGTTGCCACGTGGGTGCTAGGAACC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGGAATTACAGATGGTTGTGAGTTGCCACGTGGGTGCTAGGAACC  642

seq1  AAGCTCGGGTCTTCTGCAAGAGTAACTGTGCTCTTAACCATTGAGATATT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCGGGTCTTCTGCAAGAGTAACTGTGCTCTTAACCATTGAGATATT  692

seq1  TCTCCAGAACTCTAACGACCATTCATTCCGGAACAAATCCAGCCCCCTGG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGAACTCTAACGACCATTCATTCCGGAACAAATCCAGCCCCCTGG  742

seq1  GACCTATCCTTGGACCTACTCATGACATCAGGGCTCCATAGCCTAGCAGT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTATCCTTGGACCTACTCATGACATCAGGGCTCCATAGCCTAGCAGT  792

seq1  AGATCTACTTCTTGAAGTTCCACCAGGTCACCTTGTACCTCACTAGGTAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTACTTCTTGAAGTTCCACCAGGTCACCTTGTACCTCACTAGGTAA  842

seq1  AAGGTACCTCACAAGTTTCCAGCTTATGAACCTTTGAGGGACAAACCAAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTACCTCACAAGTTTCCAGCTTATGAACCTTTGAGGGACAAACCAAA  892

seq1  CAATCAGCTACAGTATTGTGGCTATCGACGAGATAAACGTTGAGTCTGGG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGCTACAGTATTGTGGCTATCGACGAGATAAACGTTGAGTCTGGG  942

seq1  TTGCGTTGAATTC  955
      |||| ||||||||
seq2  TTGCATTGAATTC  955