BAC Information

Click to search

BAC

Clone NameB6Ng01-047M13
Chromosome8 (Build37)
Map Location 80,088,070 - 80,197,362
singlet/doubletdoublet
Overlap geneAI931714, Tmem34, Ednra
Upstream geneLOC100039211, LOC384847, Nr3c2, Arhgap10, LOC100039235
Downstream geneEG622803, Ttc29, Pou4f2, LOC100039422, Rbmxrt, Slc10a7, LOC100039466
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047M13.bB6Ng01-047M13.g
ACCDH872547DH872548
length1,0781,123
definitionDH872547|Mus musculus domesticus DNA, BAC clone: B6Ng01-047M13, 5' end.DH872548|Mus musculus domesticus DNA, BAC clone: B6Ng01-047M13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,196,166 - 80,197,362)(80,088,070 - 80,089,218)
sequence
gaattcctttgggagtttgcacgtaatccagggaaatgtgtgtgttttca
ctaaagtcccctgaaatgtatcatctcctctgactttaaatacagataat
aatccactatattgtttaaggatatcatggcttttttttagagggaaaaa
catatgtagacaatcctaaaacattaatgttcaacatcttggtaggtttt
tttttttgagccattatactatttagttagaactacataatatataattt
gttgatgaatacatatctttatcagaattttattttcagtattttgctag
ctccattttagtgtaattggtttctagtatggccacatatatttaaattt
gtgcttattaaaatataatgttgaagtctagaaagttagttcagttggtt
cagtccccagaatccatgtaagaagctagtcacagtagcgccagcttgta
aaaaccagtgctgggaagaacaaggactgacgaagccacaggcttgagcc
agatgaccggtccccatgtgagaccctgtctcaaaaaacaaggtaaatgg
cttctgaagaatgatacctaaggctgttctgtcctacacacatgcacaca
tgaacacatgcatgcacacacatgtgcgcacacaaatacatgagcatgca
tgaacatacacacaggaacacatacatacacatacatgcacatgaacaca
tgaacatgcataaacacacaaagtattgttctcagaaggaattctgcctc
ccaccagatttctaaaggtgtctgtgcgacataaggaaccttgtctggac
ttctgtcttatagaaccattttctgtatggaaagggctgctttccattca
gaagctgtagtgttcaagaacatggtggtcatgtctgtgggaactgatca
actacacaagaggcatgttatctcaataaatatctggagaagacataaga
gtaaaagcacgtcttcccagtctgaggtgaatcattagaataacttggat
tttatcttcattaaaagacaagaaactggaatttctggattgtatcatct
tgctgaagagagaggagagagagaggag
gaattccaggatcagagccagctttttcttttttcttttctttttcttaa
attgaaggattctttaaaaaaaaaaaaaaagatttatttatttgttgtat
gtatgtgagtacactgtagctgtacagatggttgtgagccatcatgtgga
tgttgggaattgaattcaggatatctgctcactctggtccaaagatggtg
cccatcttgtagagtatgtggtgtggctctcacctcattgtgtgatgctc
actcacatccctatgtacgtggtgaaggaccgaacgaagtgctttgtcta
ttcttgcttgtcccctgctagcttgccagaattcaaaagcacattttttg
aatatgaataggagtcatttgttgaatatgcgttctgtaaatacattcct
ttttaaaagttttaaaatttatatttctgcatgtgtgtttgtgtgtgtgc
catgtgtatgtggagtttgtgggaccataagagggttttgctggagttgt
aggtgtttatatgacatccgacacgtggacccagctgagctcagggactc
tacgagaacagaaagggtgcttaacctctagccatctcttcacaaaattg
ttaattttaatgtggcgttatcactttttcttcaagtgactatttatatc
tatatttaagacacccgtggccatgaggttttatttcattattatgtttt
atattttctcaactattagacaatgatatttgataatttaccaatcctgt
cttacaccttaccgtttctttcaactcttcctagggttggtgctaaggac
attgctggtatacatttaccaacaatgtgaaatttcagagcccagcctat
acttctgttgatacagaagaaacagttgaaccctacacaactgaaagatg
agtggcatccccggagatacctgcctttgacgagtgctttcagattatga
aagtgattcatatcttcagtaaaacagcacgttgctcttacctttgttgt
gtcttgttgtttgttgtttgttgtatcagtctggtcctcgtgtcgccccc
actctttcggaactcatccttaagacaggctgacctccatcctgaatctc
tggccttgcctgtcctccagagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_80196166_80197362
seq2: B6Ng01-047M13.b_44_1121 (reverse)

seq1  CTCCTCTCTCTCTTTCTTAATACTTGCCACCTGGAAATACTAAGGGAAGG  50
                                                        
seq2  --------------------------------------------------  0

seq1  CATTCTAGCTAAAGGCTGACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  100
                                              ||| ||||||
seq2  ----------------------------------------CTC-CTCTCT  9

seq1  CTCTCTTTCTCTCTCTCTCTCTCAGCAAGGATGTATACAAATCCAGAATA  150
      |||||       |||||||| ||||||| |||| |||| |||||||||  
seq2  CTCTC-------CTCTCTCT-TCAGCAA-GATG-ATAC-AATCCAGAAAT  48

seq1  TCCAGTTTCTTGTCTTTTTAATGGAGGATTAAAATCCAAGTTTATTCTAA  200
      |||||||||||||| |||||||| ||   ||||||||||| |||||||||
seq2  TCCAGTTTCTTGTC-TTTTAATGAAG--ATAAAATCCAAG-TTATTCTAA  94

seq1  TGAATTCACCTCAGACTTGGGAAGACGTGCCTTTTACTTCCTTATGTTCT  250
      || ||||||||||||| |||||||||||| ||||||||  |||||||   
seq2  TG-ATTCACCTCAGAC-TGGGAAGACGTG-CTTTTACT--CTTATGT--C  137

seq1  TTCTCCAGATTATTTATTGAGGATAACATGCCTTCTTGTGGTAGTTTGAT  300
      ||||||||| |||||||||| ||||||||||| |||||| |||| |||||
seq2  TTCTCCAGA-TATTTATTGA-GATAACATGCC-TCTTGT-GTAG-TTGAT  182

seq1  CAGTTCCCACAGACATGACCACCATGTTCCTTGAACACTACAGCTTCTGA  350
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CAGTTCCCACAGACATGACCACCATGTT-CTTGAACACTACAGCTTCTGA  231

seq1  ATGGAAAGCAGCCCTTTCCATACAGAAAATGGTTCTATAAGACAGAAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGCAGCCCTTTCCATACAGAAAATGGTTCTATAAGACAGAAGTC  281

seq1  CAGACAAGGTTCCTTATGTCGCACAGACACCTTTAGAAATCTGGTGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAAGGTTCCTTATGTCGCACAGACACCTTTAGAAATCTGGTGGGAG  331

seq1  GCAGAATTCCTTCTGAGAACAATACTTTGTGTGTTTATGCATGTTCATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATTCCTTCTGAGAACAATACTTTGTGTGTTTATGCATGTTCATGT  381

seq1  GTTCATGTGCATGTATGTGTATGTATGTGTTCCTGTGTGTATGTTCATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGTGCATGTATGTGTATGTATGTGTTCCTGTGTGTATGTTCATGC  431

seq1  ATGCTCATGTATTTGTGTGCGCACATGTGTGTGCATGCATGTGTTCATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCATGTATTTGTGTGCGCACATGTGTGTGCATGCATGTGTTCATGT  481

seq1  GTGCATGTGTGTAGGACAGAACAGCCTTAGGTATCATTCTTCAGAAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGTGTGTAGGACAGAACAGCCTTAGGTATCATTCTTCAGAAGCCA  531

seq1  TTTACCTTGTTTTTTGAGACAGGGTCTCACATGGGGACCGGTCATCTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTTGTTTTTTGAGACAGGGTCTCACATGGGGACCGGTCATCTGGC  581

seq1  TCAAGCCTGTGGCTTCGTCAGTCCTTGTTCTTCCCAGCACTGGTTTTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCCTGTGGCTTCGTCAGTCCTTGTTCTTCCCAGCACTGGTTTTTAC  631

seq1  AAGCTGGCGCTACTGTGACTAGCTTCTTACATGGATTCTGGGGACTGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGCGCTACTGTGACTAGCTTCTTACATGGATTCTGGGGACTGAAC  681

seq1  CAACTGAACTAACTTTCTAGACTTCAACATTATATTTTAATAAGCACAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGAACTAACTTTCTAGACTTCAACATTATATTTTAATAAGCACAAA  731

seq1  TTTAAATATATGTGGCCATACTAGAAACCAATTACACTAAAATGGAGCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATATATGTGGCCATACTAGAAACCAATTACACTAAAATGGAGCTA  781

seq1  GCAAAATACTGAAAATAAAATTCTGATAAAGATATGTATTCATCAACAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATACTGAAAATAAAATTCTGATAAAGATATGTATTCATCAACAAA  831

seq1  TTATATATTATGTAGTTCTAACTAAATAGTATAATGGCTCAAAAAAAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATATTATGTAGTTCTAACTAAATAGTATAATGGCTCAAAAAAAAAA  881

seq1  ACCTACCAAGATGTTGAACATTAATGTTTTAGGATTGTCTACATATGTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACCAAGATGTTGAACATTAATGTTTTAGGATTGTCTACATATGTTT  931

seq1  TTCCCTCTAAAAAAAAGCCATGATATCCTTAAACAATATAGTGGATTATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCTAAAAAAAAGCCATGATATCCTTAAACAATATAGTGGATTATT  981

seq1  ATCTGTATTTAAAGTCAGAGGAGATGATACATTTCAGGGGACTTTAGTGA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTATTTAAAGTCAGAGGAGATGATACATTTCAGGGGACTTTAGTGA  1031

seq1  AAACACACACATTTCCCTGGATTACGTGCAAACTCCCAAAGGAATTC  1197
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACACACATTTCCCTGGATTACGTGCAAACTCCCAAAGGAATTC  1078

seq1: chr8_80088070_80089218
seq2: B6Ng01-047M13.g_66_1188

seq1  GAATTCCAGGATCAGAGCCAGCTTTTTCTTTTTTCTTTTCTTTTTCTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGATCAGAGCCAGCTTTTTCTTTTTTCTTTTCTTTTTCTTAA  50

seq1  ATTGAAGGATTCTTTAAAAAAAAAAAAAAAGATTTATTTATTTGTTGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGGATTCTTTAAAAAAAAAAAAAAAGATTTATTTATTTGTTGTAT  100

seq1  GTATGTGAGTACACTGTAGCTGTACAGATGGTTGTGAGCCATCATGTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGAGTACACTGTAGCTGTACAGATGGTTGTGAGCCATCATGTGGA  150

seq1  TGTTGGGAATTGAATTCAGGATATCTGCTCACTCTGGTCCAAAGATGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGAATTGAATTCAGGATATCTGCTCACTCTGGTCCAAAGATGGTG  200

seq1  CCCATCTTGTAGAGTATGTGGTGTGGCTCTCACCTCATTGTGTGATGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTTGTAGAGTATGTGGTGTGGCTCTCACCTCATTGTGTGATGCTC  250

seq1  ACTCACATCCCTATGTACGTGGTGAAGGACCGAACGAAGTGCTTTGTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACATCCCTATGTACGTGGTGAAGGACCGAACGAAGTGCTTTGTCTA  300

seq1  TTCTTGCTTGTCCCCTGCTAGCTTGCCAGAATTCAAAAGCACATTTTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCTTGTCCCCTGCTAGCTTGCCAGAATTCAAAAGCACATTTTTTG  350

seq1  AATATGAATAGGAGTCATTTGTTGAATATGCGTTCTGTAAATACATTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAATAGGAGTCATTTGTTGAATATGCGTTCTGTAAATACATTCCT  400

seq1  TTTTAAAAGTTTTAAAATTTATATTTCTGCATGTGTGTTTGTGTGTGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAGTTTTAAAATTTATATTTCTGCATGTGTGTTTGTGTGTGTGC  450

seq1  CATGTGTATGTGGAGTTTGTGGGACCATAAGAGGGTTTTGCTGGAGTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTATGTGGAGTTTGTGGGACCATAAGAGGGTTTTGCTGGAGTTGT  500

seq1  AGGTGTTTATATGACATCCGACACGTGGACCCAGCTGAGCTCAGGGACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTTATATGACATCCGACACGTGGACCCAGCTGAGCTCAGGGACTC  550

seq1  TACGAGAACAGAAAGGGTGCTTAACCTCTAGCCATCTCTTCACAAAATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAGAACAGAAAGGGTGCTTAACCTCTAGCCATCTCTTCACAAAATTG  600

seq1  TTAATTTTAATGTGGCGTTATCACTTTTTCTTCAAGTGACTATTTATATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTAATGTGGCGTTATCACTTTTTCTTCAAGTGACTATTTATATC  650

seq1  TATATTTAAGACACCCGTGGCCATGAGGTTTTATTTCATTATTATG-TTT  699
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TATATTTAAGACACCCGTGGCCATGAGGTTTTATTTCATTATTATGTTTT  700

seq1  ATATTTTCTCAACTATTAGACAATGATATTTGATAATTTACCAATCCTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCTCAACTATTAGACAATGATATTTGATAATTTACCAATCCTGT  750

seq1  CTTACACCTTACCGTTTCTTTCAACTCTTCCTAGGGTTGGTGCTAAGGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACCTTACCGTTTCTTTCAACTCTTCCTAGGGTTGGTGCTAAGGAC  800

seq1  ATTGCTGGTATACATTTACCAACAAATGTGAAATTTCAGAGCCCAGCCTA  849
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATTGCTGGTATACATTTACCAAC-AATGTGAAATTTCAGAGCCCAGCCTA  849

seq1  TACTTCTGTTGATACAGAAGAAACAGTTGAACCCTACACAACTGAAAAGA  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TACTTCTGTTGATACAGAAGAAACAGTTGAACCCTACACAACTG-AAAGA  898

seq1  TGAGTGGCATCCCCGGAGGATACCTGCCTTTGACGGAGTGCTTTCAGATT  949
      ||||||||||||||||| |||||||||||||||| |||||||||||||||
seq2  TGAGTGGCATCCCCGGA-GATACCTGCCTTTGAC-GAGTGCTTTCAGATT  946

seq1  ATGAAAGTTGATTTCAATAATCTTCAGGTAAAAACAGCACGTTTGCTTCT  999
      ||||||| ||| ||||   ||||||||   ||||||||||| |||| |||
seq2  ATGAAAG-TGA-TTCA--TATCTTCAG--TAAAACAGCACG-TTGC-TCT  988

seq1  TACCTTTGTTGTTGTCTTGTTTGTTTGTTTGTTTGTTTGTTTCCAGTCAT  1049
      ||||||||||| ||||||| ||||||| ||||||| |||| | ||||| |
seq2  TACCTTTGTTG-TGTCTTG-TTGTTTG-TTGTTTG-TTGTAT-CAGTC-T  1032

seq1  GGTTTCTCTGTGTCGCCCCAACTCTTCTGGAACTCACTCTTTAGAGCAGG  1099
      || | ||| |||||||||| ||||||  ||||||||  ||| ||| ||||
seq2  GG-TCCTC-GTGTCGCCCCCACTCTTTCGGAACTCATCCTTAAGA-CAGG  1079

seq1  CTGACCTCCAACTCTTGACATCTTCCTGCCTCTGCCTCTGCCTCCAGAGC  1149
      ||||||||||  || ||| ||||  ||| |  ||||| | ||||||||||
seq2  CTGACCTCCA--TCCTGA-ATCT--CTGGCCTTGCCTGT-CCTCCAGAGC  1123