BAC Information

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BAC

Clone NameB6Ng01-048E08
Chromosome8 (Build37)
Map Location 92,335,368 - 92,478,707
singlet/doubletdoublet
Overlap genenone
Upstream geneSall1, LOC100041089, EG625801, EG384862
Downstream geneTox3, LOC100041133, Chd9, LOC100041156, EG626231
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048E08.bB6Ng01-048E08.g
ACCDH872881DH872882
length1,111960
definitionDH872881|Mus musculus domesticus DNA, BAC clone: B6Ng01-048E08, 5' end.DH872882|Mus musculus domesticus DNA, BAC clone: B6Ng01-048E08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,335,368 - 92,336,506)(92,477,738 - 92,478,707)
sequence
gaattcaactctactggagttccaggtgtcaaatcaccttacactgaagt
ctactgaagtcaacatggaaagtcaatcaaagcgggcctttttgaggaca
gaacatcaagatgaggagttttgagacaggcttctagcctcctgagaggc
catcttccagatgtgtccccagatgccctgggatgcacttcctccccacc
attcccatcaggctttggttcagtaaattcccgtttgtgtggaagtacgc
ttggctgccacagacacacctcttcttgttcatctgggtaattacacagt
gcctcttgtgagctagatcttttctccttgagggaaagaacagtctcagc
ctcaaaggtatttcctcccacactgtgtccacatgatctgccatttagaa
gcatttgaacaaatcattttatccatccccctccttttcagggagtttgg
gcaattgatagtactctctgtagtcctgggtgcaaaaagaactaccaaag
tgatggctggtgtgttttcttctatgtgaggtacatcacatctctggatg
atgggcatatggcatgtggtgctcaatctgcagccctccctgcaaatccc
agagagccagccacactggtaggaagattcataatttcccaccaccctct
ggctttttatgtgggtctctgattgcaaaccttcacggaaatcttaattg
gtggcagggtttacacagttcagtgagtcatttgctctctcgatgttgac
ttctgctgccatttccattccaaacaatgattcactgctaatttcaactg
tgtgtaactgtggcaatttcagcacctttggtatttctttctgacccagg
aaagctaatttcagacagaaagaggactgggagacatatgtactccatac
ttagctctcacataaatagctccatagctatgataggatctcatgggccc
atttcttactcatgctataactacaaaagggatggtggataacttctgaa
atgaaaacacatggcactccatgccaggatgactcaggaggggctccttc
aaatcttgtatggagctgtactctacactggagtgaatggtggggagacg
gagcctgcttg
gaattcccaatatgccttctgaggtatctggattactggagtaattggat
cacagaactttgttaagaaagatatgctatcaagaaaggatttagaaata
ccaattagagtcaggtgacccactgagaaacattagaattctttacacct
tttcatcatggggcaaattgtccatttaactgcagagatgatcaagatgg
taattacacatgctgaaggggtggcatgtactccacatggcatttcttac
tgtgtacctgcatccttcctccccaaaggctccaacctcagctgaattca
tgacagattagggcttatgtacatgtatggatagtcttccatgagaaggg
agaaaacacagactaatttgtgtcaatagataaagagctgatgtactcat
gagaagggccgttttcattctggacaaagtccttgatctctaaggttctt
caaaccttatttatttaaattttactttaaatgaaacactttcttttaaa
tgtaattctaagcagagctgaactttaacatatacctttctcccattcat
tctgggcctagatcttgggaagaaagttattcttttggtaaagaatcgat
tctgaaagcaaaattggttcacagtggcctatgtacctagggagcaattt
ctctttggcctgggggaaaattgtacatttaaattaccgcgaaaagtgag
accatctccagtatcatctttgctttcttgagatacaagatgattagtgt
cgtctcttgtggctaggactgcattttgagggactcactagagggaacat
aaatatgtcccctcccctttgcccaaggcgacagtgaattattcaaggcg
gactcattaactgaatctgtgcttgttacatgtcctaacaagactggtaa
atttatgcaggacagagaacttctgcatatctaagacatgacagccagca
ggataagagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_92335368_92336506
seq2: B6Ng01-048E08.b_43_1153

seq1  GAATTCAACTCTACTGGAGTTCCAGGTGTCAAATCACCTTACACTGAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTCTACTGGAGTTCCAGGTGTCAAATCACCTTACACTGAAGT  50

seq1  CTACTGAAGTCAACATGGAAAGTCAATCAAAGCGGGCCTTTTTGAGGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGAAGTCAACATGGAAAGTCAATCAAAGCGGGCCTTTTTGAGGACA  100

seq1  GAACATCAAGATGAGGAGTTTTGAGACAGGCTTCTAGCCTCCTGAGAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATCAAGATGAGGAGTTTTGAGACAGGCTTCTAGCCTCCTGAGAGGC  150

seq1  CATCTTCCAGATGTGTCCCCAGATGCCCTGGGATGCACTTCCTCCCCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCCAGATGTGTCCCCAGATGCCCTGGGATGCACTTCCTCCCCACC  200

seq1  ATTCCCATCAGGCTTTGGTTCAGTAAATTCCCGTTTGTGTGGAAGTACGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCATCAGGCTTTGGTTCAGTAAATTCCCGTTTGTGTGGAAGTACGC  250

seq1  TTGGCTGCCACAGACACACCTCTTCTTGTTCATCTGGGTAATTACACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGCCACAGACACACCTCTTCTTGTTCATCTGGGTAATTACACAGT  300

seq1  GCCTCTTGTGAGCTAGATCTTTTCTCCTTGAGGGAAAGAACAGTCTCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTGTGAGCTAGATCTTTTCTCCTTGAGGGAAAGAACAGTCTCAGC  350

seq1  CTCAAAGGTATTTCCTCCCACACTGTGTCCACATGATCTGCCATTTAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGGTATTTCCTCCCACACTGTGTCCACATGATCTGCCATTTAGAA  400

seq1  GCATTTGAACAAATCATTTTATCCATCCCCCTCCTTTTCAGGGAGTTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGAACAAATCATTTTATCCATCCCCCTCCTTTTCAGGGAGTTTGG  450

seq1  GCAATTGATAGTACTCTCTGTAGTCCTGGGTGCAAAAAGAACTACCAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTGATAGTACTCTCTGTAGTCCTGGGTGCAAAAAGAACTACCAAAG  500

seq1  TGATGGCTGGTGTGTTTTCTTCTATGTGAGGTACATCACATCTCTGGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCTGGTGTGTTTTCTTCTATGTGAGGTACATCACATCTCTGGATG  550

seq1  ATGGGCATATGGCATGTGGTGCTCAATCTGCAGCCCTCCCTGCAAATCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCATATGGCATGTGGTGCTCAATCTGCAGCCCTCCCTGCAAATCCC  600

seq1  AGAGAGCCAGCCACACTGGTAGGAAGATTCATAATTTCCCACCACCCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCCAGCCACACTGGTAGGAAGATTCATAATTTCCCACCACCCTCT  650

seq1  GGCTTTTTATGTGGGTCTCTGATTGCAAACCTTCACGGAAATCTTAATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTTATGTGGGTCTCTGATTGCAAACCTTCACGGAAATCTTAATTG  700

seq1  GTGGCAGGGTTTACACAGTTCAGTGAGTCATTTGCTCTCTCGATGTTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGGGTTTACACAGTTCAGTGAGTCATTTGCTCTCTCGATGTTGAC  750

seq1  TTCTGCTGCCATTTCCATTCCAAACAATGATTCACTGCTAATTTCAACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTGCCATTTCCATTCCAAACAATGATTCACTGCTAATTTCAACTG  800

seq1  TGTGTAACTGTGGCAATTTCAGCACCTTTGGTATTTCTTTCTGACCCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAACTGTGGCAATTTCAGCACCTTTGGTATTTCTTTCTGACCCAGG  850

seq1  AAAGCTAATTTCAGAACAGAAAGAGGACTGGAAGACATATTGTACTCCCA  900
      |||||||||||||| |||||||||||||||| ||||||| |||||| |||
seq2  AAAGCTAATTTCAG-ACAGAAAGAGGACTGGGAGACATA-TGTACT-CCA  897

seq1  TAACTTAGCTCTCCACATAAATAAGCTCCCATTAGCCTATGGATAGGAAT  950
      | |||||||||| ||||||||| ||||||   ||| |||| |||||||  
seq2  T-ACTTAGCTCT-CACATAAAT-AGCTCC--ATAG-CTAT-GATAGGA--  938

seq1  CCTCATGGGCCCCATTTCTTACCTCATTGCTTAATAACCTACAAAAGGGA  1000
       |||||||| ||||||||||| |||| ||||  |||| ||||||||||||
seq2  TCTCATGGG-CCCATTTCTTA-CTCA-TGCT--ATAA-CTACAAAAGGGA  982

seq1  TGGTGGATAACTCTGAGATATGAAAACCACATGCCACTCCATGCCAAGGA  1050
      |||||||||||| |  || ||||||| |||||| ||||||||||| ||||
seq2  TGGTGGATAACT-TCTGAAATGAAAA-CACATGGCACTCCATGCC-AGGA  1029

seq1  TGACTCAGGAAGTGGCTCTCTACCAATC-TGTACTGGAGCTGTACTCTAC  1099
      ||||||||| || ||||| || | |||| |||| ||||||||||||||||
seq2  TGACTCAGG-AGGGGCTC-CTTCAAATCTTGTA-TGGAGCTGTACTCTAC  1076

seq1  ACTGTAAGTGACAGTGGTGGAAGCACGTGAGCCTGGCTTG  1139
      ||||  ||||  | ||||||    ||| |||||| |||||
seq2  ACTG-GAGTG--AATGGTGGGGAGACG-GAGCCT-GCTTG  1111

seq1: chr8_92477738_92478707
seq2: B6Ng01-048E08.g_68_1027 (reverse)

seq1  GCTCTCTATCCTGGCTTGCCTTGTCATGTCTTTAGATATGGCAGAAGTTT  50
      ||||| |||||| ||| ||  ||||||||| |||||||| ||||||| ||
seq2  GCTCT-TATCCT-GCTGGC--TGTCATGTC-TTAGATAT-GCAGAAG-TT  43

seq1  CTCTGTCCTGGCATTAAATTTACCAGTCTTGTTTAGGACATGGTAACAAG  100
      ||||||||| ||| ||||||||||||||||| ||||||||| ||||||||
seq2  CTCTGTCCT-GCA-TAAATTTACCAGTCTTG-TTAGGACAT-GTAACAAG  89

seq1  CACAGATTCAGTTAATTGAGTCCGCCTTGAATAATTCACTTGTCGCCTGG  150
      ||||||||||||||| ||||||||||||||||||||||| |||||||| |
seq2  CACAGATTCAGTTAA-TGAGTCCGCCTTGAATAATTCAC-TGTCGCCTTG  137

seq1  GGCAAAGGGGAGGGGACATATTTATGTTCCCTCTAGTGAGTCCCTCAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGGGGAGGGGACATATTTATGTTCCCTCTAGTGAGTCCCTCAAAA  187

seq1  TGCAGTCCTAGCCACAAGAGACGACACTAATCATC-TGTATCTCAGGAAG  249
      ||||||||||||||||||||||||||||||||||| ||||||||| ||| 
seq2  TGCAGTCCTAGCCACAAGAGACGACACTAATCATCTTGTATCTCAAGAAA  237

seq1  CAAAAGATGATACTGGAGATGGTCTCACTTTTCGCGGT-ATTTGAATGTA  298
        |||||||||||||||||||||||||||||||||||| |||| ||||||
seq2  GCAAAGATGATACTGGAGATGGTCTCACTTTTCGCGGTAATTTAAATGTA  287

seq1  CAATTTTCCCCCAGGCC-AAGAGAAATTGCTCCCTAGGTACATAGGCCAC  347
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CAATTTTCCCCCAGGCCAAAGAGAAATTGCTCCCTAGGTACATAGGCCAC  337

seq1  TGTGAACCAATTTTGCTTTCAGAATCGATTCTTTACCAAAAGAATAACTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACCAATTTTGCTTTCAGAATCGATTCTTTACCAAAAGAATAACTT  387

seq1  TCTTCCCAAGATCTAGGCCCAGAATGAATGGGAGAAAGGTATATGTTAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCAAGATCTAGGCCCAGAATGAATGGGAGAAAGGTATATGTTAAA  437

seq1  GTTCAGCTCTGCTTAGAATTACATTTAAAAGAAAGTGTTTCATTTAAAGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGCTCTGCTTAGAATTACATTTAAAAGAAAGTGTTTCATTTAAAGT  487

seq1  AAAATTTAAATAAATAAGGTTTGAAGAACCTTAGAGATCAAGGACTTTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTAAATAAATAAGGTTTGAAGAACCTTAGAGATCAAGGACTTTGT  537

seq1  CCAGAATGAAAACGGCCCTTCTCATGAGTACATCAGCTCTTTATCTATTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATGAAAACGGCCCTTCTCATGAGTACATCAGCTCTTTATCTATTG  587

seq1  ACACAAATTAGTCTGTGTTTTCTCCCTTCTCATGGAAGACTATCCATACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATTAGTCTGTGTTTTCTCCCTTCTCATGGAAGACTATCCATACA  637

seq1  TGTACATAAGCCCTAATCTGTCATGAATTCAGCTGAGGTTGGAGCCTTTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATAAGCCCTAATCTGTCATGAATTCAGCTGAGGTTGGAGCCTTTG  687

seq1  GGGAGGAAGGATGCAGGTACACAGTAAGAAATGCCATGTGGAGTACATGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAAGGATGCAGGTACACAGTAAGAAATGCCATGTGGAGTACATGC  737

seq1  CACCCCTTCAGCATGTGTAATTACCATCTTGATCATCTCTGCAGTTAAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCTTCAGCATGTGTAATTACCATCTTGATCATCTCTGCAGTTAAAT  787

seq1  GGACAATTTGCCCCATGATGAAAAGGTGTAAAGAATTCTAATGTTTCTCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAATTTGCCCCATGATGAAAAGGTGTAAAGAATTCTAATGTTTCTCA  837

seq1  GTGGGTCACCTGACTCTAATTGGTATTTCTAAATCCTTTCTTGATAGCAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTCACCTGACTCTAATTGGTATTTCTAAATCCTTTCTTGATAGCAT  887

seq1  ATCTTTCTTAACAAAGTTCTGTGATCCAATTACTCCAGTAATCCAGATAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTTAACAAAGTTCTGTGATCCAATTACTCCAGTAATCCAGATAC  937

seq1  CTCAGAAGGCATATTGGGAATTC  970
      |||||||||||||||||||||||
seq2  CTCAGAAGGCATATTGGGAATTC  960